Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00667 ATGTCTTCTTCCCAAGCCTCTGCTCCTGTGTCATCCTCTAAACAGGTTATTCGCCGAATCTCGAATTTTGCCGGAGACTTTTGGAGTGACCAATTCCTCAACTATGAGCCTGAGAATTTGGAGCAACAACTTCTTCAGGAGAATGAGGTTGGAAAGTTGAAGGAGGATGTGAGAAAGATGTTGCTATGGAGTGCAAATGATTCATTTCATCAGTTGAAACTAATCGATGACATCCAACGTCTGGGCGTGGCTTACCATTTTGAAAGAGAAATCAAGGAAACATTAGAGAATATATATGTTGCGTATCTTGACCATCGTTTGGACAACTTCACTGATTTAAAATATGTCTCTCTTTGTTTTCGTCTTCTTCGACAACAGGGGATTAGTATATCATCAAACATGTTTAACAGTTTCAAAGACGAAAGGGGCATGTTCAGGGAAAGCATAACAACTGATGTGGAGGGGTTGCTTAGCTTGTATGAAGCTACATATCTAGGAGTAAAAGGAGAAACTGTAGTAGATGAGGCTCTTCTCTTCTCCACTACCCACCTTGAAGCTTCTTTGAAACATGAAAGCTCCCCTCTTTCAAACATGGTTGCTAAAGCGCTCCATAGACCTTTACGAAAGAGCTTGGCGAGAGTAAATGCTATTGATTTCATCGTAGTCTACAAAGACCGCCCTTCCTATAGCGAAACTCTTCTAAAATTCACAATATTAGATTTTAATCTTCTTCAATCTATGCACAAGAAGGAGCTCTATGATCTTAGAAAGTGGTGGAGAGATTTGGAGTTAGGAAAGAGACTTCCATTTGCAAGAGACAGGATTGTTGAGTGTTTCTTTTGCATGACAGGAATTAGCTTTGAACCTGAGTTCTGTCTTGCAAGAAGAATATTAACTAAAATCTCTTACCTTATCACTATAATTGATGACATCTATGATTCCTATGGCTCTTTTGAAGAGATTTCGCTTTTCACTCAAGCAATGAAAAGTTGGAGTCTCAAATCCGCGAATAATCTTCCCGAGTACATGAAAATATGTCTCCAAGCAGTCTTGGATTGCTTTGAAGAAATGGAAGAATCCATGATCAAACAAAGAACATCATATCGAATGTTGTACGCAAAAGAAGCGATGAATAAGTATATTCAATCCATCTTCGACGAGGCAAAATGGTGTAATGACAATTATATTCCAACAATTGAGGAATATCTTTATGTGTCTATGACATCATGTGGCTATGCTCTCCTTTCCACTATGTGTTTTGTGGGCATGCCTGCCGATGCTGTTACAGTGGAAGACTTTCAATGGTTGTTCAATCAACCTAAGATTCTTAAAGCAATTGAAGTAATTTTTAGGCTCATGGACGACACAGTTTCCAGCAAGCGGGAGAAAGAAATGGGGTCGGTGGCAAAAGCCATAGAATGTTACACAACACAACATGGAACAACGGATGAGAGGGCTGTTCATGTTCTTCAAAGTTGGGTGTCGGAGGCATGGAATGACCTAAACCAAGAGCTCTTGAAACCAACTTCCACGAGAAGGAATATCCTTTCACATTTCCTTTACATGGCCCAAGTTATAGATGAAGTGTACAAAGACGAAGATAATTATACTGTCTTCGGAAATTCCATGAAAGAACGAATTTCCGCCATGTTTATCAATCCGCTCTCTCTCTAA 1674 39.67 MSSSQASAPVSSSKQVIRRISNFAGDFWSDQFLNYEPENLEQQLLQENEVGKLKEDVRKMLLWSANDSFHQLKLIDDIQRLGVAYHFEREIKETLENIYVAYLDHRLDNFTDLKYVSLCFRLLRQQGISISSNMFNSFKDERGMFRESITTDVEGLLSLYEATYLGVKGETVVDEALLFSTTHLEASLKHESSPLSNMVAKALHRPLRKSLARVNAIDFIVVYKDRPSYSETLLKFTILDFNLLQSMHKKELYDLRKWWRDLELGKRLPFARDRIVECFFCMTGISFEPEFCLARRILTKISYLITIIDDIYDSYGSFEEISLFTQAMKSWSLKSANNLPEYMKICLQAVLDCFEEMEESMIKQRTSYRMLYAKEAMNKYIQSIFDEAKWCNDNYIPTIEEYLYVSMTSCGYALLSTMCFVGMPADAVTVEDFQWLFNQPKILKAIEVIFRLMDDTVSSKREKEMGSVAKAIECYTTQHGTTDERAVHVLQSWVSEAWNDLNQELLKPTSTRRNILSHFLYMAQVIDEVYKDEDNYTVFGNSMKERISAMFINPLSL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28208869 28211208 + BLOR11848 Blo03g00667 58131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00667 557 CDD Terpene_cyclase_plant_C1 18 554 IPR044814 GO:0010333|GO:0016102
Blo03g00667 557 PANTHER TERPENE SYNTHASE 2-RELATED 13 549 - -
Blo03g00667 557 Pfam Terpene synthase family, metal binding domain 234 500 IPR005630 GO:0000287|GO:0010333|GO:0016829
Blo03g00667 557 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 26 228 IPR008930 -
Blo03g00667 557 Gene3D Farnesyl Diphosphate Synthase 27 545 IPR008949 -
Blo03g00667 557 Pfam Terpene synthase, N-terminal domain 28 203 IPR001906 GO:0010333|GO:0016829
Blo03g00667 557 SUPERFAMILY Terpenoid synthases 230 555 IPR008949 -
Blo03g00667 557 SFLD Isoprenoid Synthase Type I 231 555 - -
Blo03g00667 557 PANTHER OS04G0344100 PROTEIN-RELATED 13 549 - -
Blo03g00667 557 SFLD Terpene Cyclase Like 1 C Terminal Domain 231 555 IPR034741 -
Blo03g00667 557 Gene3D - 66 229 IPR036965 GO:0010333|GO:0016829
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00667 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 ag:AIO10965 525.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00667 Blo-Chr3:28208869 Blo15g00204 Blo-Chr15:2107125 0 dispersed
Blo04g00458 Blo-Chr4:3816190 Blo03g00667 Blo-Chr3:28208869 5.77E-24 dispersed
Blo03g00667 Blo-Chr3:28208869 Blo03g00668 Blo-Chr3:28238364 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g208 Blo03g00667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013164 2 0 21 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00667 Blo_Chr03 FPKM 6.073239 5.220307 6.815893 9.809883 5.519252 8.081549 5.367513 17.808784 14.59095 15.955403