Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00671 ATGGCGCCGAGAGACAGATCCACCGCGCCGGACCCGAACTCTGGTTCGGGCTGTAAGGAAATTAGATATCGAGGTGTGAGGAAGCGGCCATGGGGAAGGTACGCGGCGGAGATTCGCGACCCTGGAAAGAAGACGCGGGTTTGGCTGGGGACCTTCGATACTGCGGAAGAGGCGGCGCGTGCTTATGATAATGCAGCGCGTGAGTTTCGTGGGTTGAAAGCTAAGACTAATTTCCCTACTCCGTCGGATCTCGCTGGCGTGGATGGAAATCATAACTTCACACGCAGCAGTCCCAGTCAGACCAGCACCGTCGAGTCGTCTTCTCCTCCGCCGCCGTTGGACCTCACTCTCACTCCCGTATCCATCACCGCTGGTCGTTTCGCCGGGAGTTGCTATCCTCCCGGAGGTTTCTATGCGGTTCCGATGGCCCGTCCGCTCTACTTCGATGCTTTCGCCCGTTCAGAAAAGACGAGAGTAACACACCGGGAAATGCAAAAGTTTTATACTGCGATGGTTTCTGATTTCAGGCCGGTCATGGCAGGCGGGGCACAGAGCGACTCCGGTTCGTCGTCGGTCGTCGATTTCAATCAAACCCAAAACATCGGACGATTAGATCTCGATCTTAACCAGCCTCCCCCTCCCGAGGTCGCTTAA 654 56.42 MAPRDRSTAPDPNSGSGCKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDNAAREFRGLKAKTNFPTPSDLAGVDGNHNFTRSSPSQTSTVESSSPPPPLDLTLTPVSITAGRFAGSCYPPGGFYAVPMARPLYFDAFARSEKTRVTHREMQKFYTAMVSDFRPVMAGGAQSDSGSSSVVDFNQTQNIGRLDLDLNQPPPPEVA 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28315123 28315776 + BLOR11852 Blo03g00671 58135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00671 217 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Blo03g00671 217 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Blo03g00671 217 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Blo03g00671 217 Coils Coil 55 75 - -
Blo03g00671 217 MobiDBLite consensus disorder prediction 87 111 - -
Blo03g00671 217 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Blo03g00671 217 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Blo03g00671 217 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Blo03g00671 217 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Blo03g00671 217 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Blo03g00671 217 MobiDBLite consensus disorder prediction 1 22 - -
Blo03g00671 217 MobiDBLite consensus disorder prediction 74 115 - -
Blo03g00671 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 205 - -
Blo03g00671 217 PANTHER ERF FAMILY PROTEIN 1 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00671 Blo-Chr3:28315123 Blo13g00356 Blo-Chr13:20956256 1.54E-32 dispersed
Blo14g00403 Blo-Chr14:4414952 Blo03g00671 Blo-Chr3:28315123 1.70E-42 dispersed
Blo04g01217 Blo-Chr4:23070283 Blo03g00671 Blo-Chr3:28315123 2.49E-34 transposed
Blo07g00887 Blo-Chr7:27634893 Blo03g00671 Blo-Chr3:28315123 9.39E-30 transposed
Blo01g00848 Blo-Chr1:15066358 Blo03g00671 Blo-Chr3:28315123 9.79E-31 wgd
Blo03g00671 Blo-Chr3:28315123 Blo03g01556 Blo-Chr3:43268014 2.92E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12122 PF00847 AP2 2.30E-15 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00671 K09286 - zju:107432496 224.557