Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00677 ATGAAGGTAAGCACTGGATCTGTCATCCGTATGTGCGATTGCAATAGTATAACGATAATATTTGGTATGCATCTTTCCTTCTCGACTTCTTTTTCTCGCTCCTTTAATGGATGGGAGGAAAAAGTCGGGCTGGGTACATCCGATACTGACTCCGGAAAAGGAAAGAGCAAGAAGTCAAAGAACATAACGCATGGATTTCACTTGGTCAAGGGAAAGTCACATCATGCCATGGAAGATTATGTCGTTGCAGAGTTCAAGCAAGTTGGTGATAAGGAACTCGGTTTATTCGCAATTTTTGACGGCCATTTGAGTCACAACATTCCTAACTATTTACAGACACATTTATTCGAGAATATCCTAAATGAGCCTGATTTTTGGACCAAACCAGCCAATGCAGTCAAGAAAGCATATAGCGAAACAGATGCAGTCATTCTGGACGAGGCAGTGGACTTAGGCAAAGGAGGATCTACTGCCGTTACGGCAATTCTGATCAATTGTCGTAAGCTGGTCGTAGCCAATATCGGAGATTCTCGTGCAGTTATCTGTACAAATGGGGTGGCCACTCAATTATCCATCGATCACGAGCCAAGCGTGGAAAAAGATAAGATCGAGAGTAGAGGGGGTTTCGTGTCGAACTTTCCAGGAGACGTAGCTCGAGTTGATGGGCAGCTTGCAGTGGCCAGAGCGTTTGGTGATAAAAGCTTGAAGAAACATCTGAGTTCTGACCCTGATGTGGTAGAGATAATGGTCGAGGACTGGACCGAGTTCATTATATTGGCAAGTGATGGATTATGGAAGGTGATGTCGAACCAGGAGGCAGCAGACTCGATCAAGCACATCAAGGATGCTCGAGCGGCAGCCAAGCAACTGACGGACGAGGCTCTGAAAAGGAAGAGCACGGATGACATTTCATTTGAATGGTTGTATTATCAAGAAGGGAAGGCTTCTCTCTTCCTCTTTGGAAAATTTCTAGCTCTCCTGTTTCAATTTCTTCAAAGTCTTATGGAGTTCAAGAGGTCTTTCTCTCTACTCTTCCTGCTTTTCATTTCCACTTTCTTTTCGTCTTCTAGAGCTTACAGATTCGACGTCGGTGGAAAGAGTGGGTGGACTGTCAACCCTCCTGAGAATTATGATCACTGGGCTGAAAGAAACAGATTCCAAATCAACGATGTTCTTTTTTTTAAGTATGAACGAGGGACAGATTCTGTTCTGGTAGTGAGTGAGGAGGATTATGAGAGTTGTAGTACGAAGAATCCGATTCTGAAACTTGATGATGGAAATTCTGAGTTTAAGTTTGAGAGGTCTGGCCCGTTTTACTTCATTAGTGGAAAAGAGGGGAACTGTGAAAAAGGTCAGAAATTGATCGTCGTTGTTTTAGCTTGGAGCAGTCCTTCTCCTCCATCCACGCCACCGTCCTCTTCATCTCCAAAAGTTCCAAAGCCTTCAATGTCAGCTCCGCCAAGTGCTCCTCCGAGTTCGCCCTTTCCAACGCCTCATGCTCCTCCTTCTGGTTCCCGAGGTTCACCGTCCTCGCCATCTCCTGTAGCTGGGGGATCCCCACCACCGTCCCCGAAGTTTCAAACTCCAACTTCGAAGCCACCATCTCCTGCTGCTAAAGGCCCAAGTTCATCTCCGAAGTCTCCTTCTACGGCTTCTGGAGGCCCGAGATCATCTCCAACGTCTCCATCTCCGACTTCTGGAGGCCCAAATTCATCTCCAATGTCTCCATCTCCGGCTTCTGGAGGCCCAAGTTCATCTTCGACGTCTCCATCACCAACAGTTGGAAGCCCAAGCACATCCCCAGTGACTTCATCTCCAACTATCGGAGGTCCAAAATCATCTCCAATAATTCCATCTCCAACTACTGGAGGCCCAAGTTCATCTCCGACAACTCCATCTCCAACTTCAGGTGGCCCAAGATCATCTCCGACGTCTCCATCTCCTGCTTATGGAGGCCCAAATGCATCTCCAAAGTCTTCATCTCCGACATCTGGAGGCCCAACTAGAAGCCCAAGCACATCTCCAACGACTTCATCTCCCACTACCGGAGGCCCAAAATCATCTCCAACGACTCCATCTCCAGCTACTAGAGGCCCAAGTTCTTCTCCTACGACTCCATCTCCAACTTCAGGAGGCCTAAAATCATCTCCTACGACTCCATCTCCAACTTCAGGAGGCCCAAGATCATCTCCAACGTCTCCATCTCCTGCTTATGGAGGCGCAAATGCATCTCCAAAGTCTTCATCTCCGACATTTGGAGGCCCAAGTTCATCTTCAATGTCTCCATCACCAATTGCTGGAAGCCCAAGGACATCTCCAACGACTTCATCTCCCACTACCGGAGGCCCAAAATCATCTCCAACGATTCCATCTCCATCTACTAGAGGCCCGAGTTCTTCTCCTACGACTCCATCTCCAACTTCAGGAGGCCCAAAATCATCTCCGACGACTCCATCTCCAACTACAGGAGGCCCAAGATCATCTACGACGTCTCCATCTCCGGCTTATGGAGGCCCAAATTCATCTCCAAAGTCTTCATCTCCGACATCTGGAGGCCCAAGTTCATCTTCGACGTCTCCATCACCAATTGCTGGAAGCCCAAGGACATCTCCAACGACTTCATCTCCCACTACCGGAGGCCCAAAATCATCTCCAACAATTCCATCTCCAGCTACTAGAGGCCCGAGTTCTTCTCCTACGACTCCATCTCCAACTTCAGGAGGCCCAAAATCATCTCCGACGACTCCATCTCCGACGACTCTATCTCCAACTATAGGAGGCCCAAGATCATCTTCGACGTCTCCATCTCCGGCTTATGGAGGCCCAAATGCATCTCCAAAGTCTTCATCTCCAACTTCTGGAGGCCCAAGTTCACCTTCGACATCTCCATCACCAATTGTTGGAAGCCCAAGCACATCTCCAACAAAGTCATCTCCCACTACCAGAGGCCCAAAATCATCTCCATTGACTCCATCTCCAACTCCTATAAGCCCAAGTTCATCTTCGACGACTCCATCTCCAACTTCAGGAGGCCCAAGATCTTCTCCAACGTCTCCATCTCCCACTTATGGAGGCTCAAATTCATCTCCAACATTTGCATCTCCAGCTTCTGGAAGCCCAAGTTCATCTTCGACATCTCCATCTCCATCTCTAGCTATCGGAGGCCCAAAATCATCTCCAATGACTCCATCTCCAGCTACTAGAGGCCCGAGTTCTTCTCCGACGACTCCATCTCCAACTTCAGGAGGCCCAAAATCATCTCTGACGTCTCCATCTCCTACTTATGGAGGCCCAAATTCATCTCCAACGTCTCCATCTCCGGCTTTTGGAGGCCCAAGTTCATCTTCGACGACTCCATCTCCAACTATCGGAGGCCCAAGCTCATCTCCAATGACCCCATCTCCAGCTACAGGAGGCCCAAAATCATCTCCAACAACTCCATCTCCAGCTACTAGAGGCCCAAGATCATCTCTGACGTCTCCATCTCCCTCTTCAGAAGGCCCAAATTCATCTCCAATGTCTCCATCTCCAACTTCTGGTGCCCCAAGTTCTTCTCCGATATCTTCATCACAAGATACTGAAGGCCCAAGTTCATCTCAAACGTCTCCCTCTCCAACTGTTGGAGGCCCAAGCTCATCTTCATATGCTGGAGGCCCAAGTTTGTCCGTTACGTCTCCATCTCCATCTTTTGGAGGCCCAAGCTCATTTTTGGCACATTCACCGTCGCCATCGTTTTCAGCTACATCACCATCATCAACGAATGAGACAAGTTCATCTCCATTGGAATCAAGACAATCTCCTCCTAGATCTAGCGACTTGCCCAGTGGTCACCGTCGGGTGCTTTACTGTACGGTTTGCTTTGCGACCTCGCCCATGGGGAAGAAGGAGAAGAGGGGTAAAGTGATTGTCATATCTGGTCCCACTGGTGCTGGAAAGAGCAGGCTTGCTCTGGAGCTTGCCAAGCTTCTCGGCGGCGAAATTATTAGTGCCGACTCCGTTCAGGTATATAAGGGGCTTGATGTTGGATCTGCAAAGCCTCCTTTAAGCCACCAACGGGAGGTTCCACATCATCTAATTGACATATTGCATCCTTCTGAAGACTATTCTGTTGGACAATATTTTGAGGATGCGAGACAGGCAACTGATTCTATTCTGCAGAATGGTCATGTGCCAATAGTTACTGGTGGGACTGGATTATACTTGAGATGGTTCATGTATGGCAAGCCAAATGTTCCAAAGGCATCTCCTGAGATCGCATCACAAGTTTGTTCAGAATTAGCTGACTTACAGAGAGACGAAGACTGGGATGGAGCTGTGCAGTTGGTTGTCAAAGCGGGGGATCCAAACGCTCAATTTATTGCTATGAATGATTGGTATAGACTACAACGCAGCCTTGAAATTATCAAGTCTAGTGGATCACCTCCATCTGCGTTTCAAGTGCCATATGAGTCTTTCAAGGGGCAATGTGATTTGAGCACGACAGGTAGCAGCAATGATGCCGTCTCTTCGATTGATGAACTGGATAAATTGAAATCAAAGGAGTTGGACTATGACTTCATTTGCTTTTTCCTCTCTAGCCGAAGACTTGACTTGTATAAACTAATTGACGATCGCTGTGAAGATATGCTTTCAGGAAGTGATGGGATTTTATCCGAGGCCAAATGGCTTTTAGATTCAGGTCTTCTTCCAAATTCAAATTCTGCAACCCGAGCTATTGGTTATAGACATGCTATGGAATACTTGCTAAGATGTAGGCAGAACGGTGGAAGTTCTCCAGGAGAGTTTTTTGCTTTTTTATCAGAATTTCAGAAAGCATCTAGAAACTTTGCTAAGAGGCAGTTGACATGGTTCCGCAATGAGCAAATATATCATTGGCTTGATGCATCTAAACCCATGGAAACAGTCCTTCAGTTCATCTGCGAGGCATACAATGATCAAAGTGGGAATTTGACCATCCCCGAATACCTTAGAATGAAGAAAAATGTTTCAAACCGCCGCGAAGTTTCAGACCTGAAGGCTTATCGTACAAGAAATAGGCATTTTGTGCAACGCCAAGATTGCTTCGACATTTTAGATTGGATCAATCAAGTTCAAAGTGATCAATCTCTCGAACTAAGCTCGATGTCAACATTTCAGAAATGA 5142 47.16 MKVSTGSVIRMCDCNSITIIFGMHLSFSTSFSRSFNGWEEKVGLGTSDTDSGKGKSKKSKNITHGFHLVKGKSHHAMEDYVVAEFKQVGDKELGLFAIFDGHLSHNIPNYLQTHLFENILNEPDFWTKPANAVKKAYSETDAVILDEAVDLGKGGSTAVTAILINCRKLVVANIGDSRAVICTNGVATQLSIDHEPSVEKDKIESRGGFVSNFPGDVARVDGQLAVARAFGDKSLKKHLSSDPDVVEIMVEDWTEFIILASDGLWKVMSNQEAADSIKHIKDARAAAKQLTDEALKRKSTDDISFEWLYYQEGKASLFLFGKFLALLFQFLQSLMEFKRSFSLLFLLFISTFFSSSRAYRFDVGGKSGWTVNPPENYDHWAERNRFQINDVLFFKYERGTDSVLVVSEEDYESCSTKNPILKLDDGNSEFKFERSGPFYFISGKEGNCEKGQKLIVVVLAWSSPSPPSTPPSSSSPKVPKPSMSAPPSAPPSSPFPTPHAPPSGSRGSPSSPSPVAGGSPPPSPKFQTPTSKPPSPAAKGPSSSPKSPSTASGGPRSSPTSPSPTSGGPNSSPMSPSPASGGPSSSSTSPSPTVGSPSTSPVTSSPTIGGPKSSPIIPSPTTGGPSSSPTTPSPTSGGPRSSPTSPSPAYGGPNASPKSSSPTSGGPTRSPSTSPTTSSPTTGGPKSSPTTPSPATRGPSSSPTTPSPTSGGLKSSPTTPSPTSGGPRSSPTSPSPAYGGANASPKSSSPTFGGPSSSSMSPSPIAGSPRTSPTTSSPTTGGPKSSPTIPSPSTRGPSSSPTTPSPTSGGPKSSPTTPSPTTGGPRSSTTSPSPAYGGPNSSPKSSSPTSGGPSSSSTSPSPIAGSPRTSPTTSSPTTGGPKSSPTIPSPATRGPSSSPTTPSPTSGGPKSSPTTPSPTTLSPTIGGPRSSSTSPSPAYGGPNASPKSSSPTSGGPSSPSTSPSPIVGSPSTSPTKSSPTTRGPKSSPLTPSPTPISPSSSSTTPSPTSGGPRSSPTSPSPTYGGSNSSPTFASPASGSPSSSSTSPSPSLAIGGPKSSPMTPSPATRGPSSSPTTPSPTSGGPKSSLTSPSPTYGGPNSSPTSPSPAFGGPSSSSTTPSPTIGGPSSSPMTPSPATGGPKSSPTTPSPATRGPRSSLTSPSPSSEGPNSSPMSPSPTSGAPSSSPISSSQDTEGPSSSQTSPSPTVGGPSSSSYAGGPSLSVTSPSPSFGGPSSFLAHSPSPSFSATSPSSTNETSSSPLESRQSPPRSSDLPSGHRRVLYCTVCFATSPMGKKEKRGKVIVISGPTGAGKSRLALELAKLLGGEIISADSVQVYKGLDVGSAKPPLSHQREVPHHLIDILHPSEDYSVGQYFEDARQATDSILQNGHVPIVTGGTGLYLRWFMYGKPNVPKASPEIASQVCSELADLQRDEDWDGAVQLVVKAGDPNAQFIAMNDWYRLQRSLEIIKSSGSPPSAFQVPYESFKGQCDLSTTGSSNDAVSSIDELDKLKSKELDYDFICFFLSSRRLDLYKLIDDRCEDMLSGSDGILSEAKWLLDSGLLPNSNSATRAIGYRHAMEYLLRCRQNGGSSPGEFFAFLSEFQKASRNFAKRQLTWFRNEQIYHWLDASKPMETVLQFICEAYNDQSGNLTIPEYLRMKKNVSNRREVSDLKAYRTRNRHFVQRQDCFDILDWINQVQSDQSLELSSMSTFQK 1713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28471536 28485510 + BLOR11858 Blo03g00677 58141

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00677 1713 Gene3D - 1410 1480 - -
Blo03g00677 1713 SUPERFAMILY Cupredoxins 358 459 IPR008972 -
Blo03g00677 1713 MobiDBLite consensus disorder prediction 463 1275 - -
Blo03g00677 1713 MobiDBLite consensus disorder prediction 542 985 - -
Blo03g00677 1713 Pfam Plastocyanin-like domain 369 452 IPR003245 GO:0009055
Blo03g00677 1713 MobiDBLite consensus disorder prediction 464 541 - -
Blo03g00677 1713 SMART PP2C_4 53 1303 IPR001932 -
Blo03g00677 1713 Hamap tRNA dimethylallyltransferase [miaA]. 1301 1637 IPR018022 GO:0008033
Blo03g00677 1713 MobiDBLite consensus disorder prediction 1001 1272 - -
Blo03g00677 1713 TIGRFAM miaA: tRNA dimethylallyltransferase 1301 1479 IPR018022 GO:0008033
Blo03g00677 1713 PRINTS Proline rich extensin signature 479 491 - -
Blo03g00677 1713 PRINTS Proline rich extensin signature 518 534 - -
Blo03g00677 1713 PRINTS Proline rich extensin signature 548 573 - -
Blo03g00677 1713 PRINTS Proline rich extensin signature 459 475 - -
Blo03g00677 1713 PRINTS Proline rich extensin signature 491 512 - -
Blo03g00677 1713 MobiDBLite consensus disorder prediction 986 1000 - -
Blo03g00677 1713 Gene3D - 1299 1680 IPR027417 -
Blo03g00677 1713 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 1291 1697 - -
Blo03g00677 1713 CDD OsENODL1_like 359 459 IPR041846 -
Blo03g00677 1713 Pfam Protein phosphatase 2C 74 303 IPR001932 -
Blo03g00677 1713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1301 1431 IPR027417 -
Blo03g00677 1713 ProSiteProfiles Phytocyanin domain profile. 359 460 IPR003245 GO:0009055
Blo03g00677 1713 SUPERFAMILY PP2C-like 60 304 IPR036457 -
Blo03g00677 1713 ProSiteProfiles PPM-type phosphatase domain profile. 63 310 IPR001932 -
Blo03g00677 1713 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1291 1697 IPR039657 -
Blo03g00677 1713 CDD PP2Cc 70 304 IPR001932 -
Blo03g00677 1713 Gene3D - 45 312 IPR036457 -
Blo03g00677 1713 Gene3D - 357 463 IPR008972 -
Blo03g00677 1713 Pfam IPP transferase 1334 1620 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00677 K00791 miaA, TRIT1; tRNA dimethylallyltransferase [EC:2.5.1.75] - jre:109012517 647.891
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00069 Blo-Chr2:468399 Blo03g00677 Blo-Chr3:28471536 4.58E-42 dispersed
Blo03g00677 Blo-Chr3:28471536 Blo14g00764 Blo-Chr14:22841536 3.08E-94 dispersed
Blo05g00377 Blo-Chr5:4527118 Blo03g00677 Blo-Chr3:28471536 6.19E-16 dispersed
Blo07g00204 Blo-Chr7:2583703 Blo03g00677 Blo-Chr3:28471536 2.70E-21 dispersed
Blo16g01068 Blo-Chr16:39238493 Blo03g00677 Blo-Chr3:28471536 9.16E-15 dispersed
Blo17g00316 Blo-Chr17:3319782 Blo03g00677 Blo-Chr3:28471536 5.24E-27 dispersed
Blo19g00144 Blo-Chr19:5015876 Blo03g00677 Blo-Chr3:28471536 4.89E-20 dispersed
Blo03g00677 Blo-Chr3:28471536 Blo11g00033 Blo-Chr11:266677 1.04E-88 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008288 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00677 Blo_Chr03 FPKM 42.656616 43.500526 40.589432 41.193268 30.783386 30.647524 26.532335 33.322254 35.728622 34.021313