Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00681 ATGATGGCTTCTCCTTTACTCCTGAGCTTCTTGATTTTCTTCTGGTTGATTCTCAGTGGAAAGAAAGTTAGTGGAGGTGATGCGATTGGAGGTGGCAAGAATGGCGGAGGCATCATAGGCGCAGTTTTGGACGAAAGCAGCCGAGTGGGAAAAGAACAGAGAGTAGCCATGGACGCCGCCATTAAAGATATCTATGAGAAAACAAATAAAAGCTTTGGGCTTTCCATTAAAGACACGCAAGGAGTTCCTTCCAGAGCAGCTCTCGCAGCCGCTGAACTTGTCGATTCACATGGATTGAAAGCTATACTTGGACCGCAGACATGGGAAGAGACCTCTCTAGTTGCAGAGATCGGCAGTGAAGCTCAAATTCCGGTCCTTTCTTTTTCCGAATCGATCCCTCGATGGGCGAGAGAGAATTGGCCTTTCCTGATTCAAGATTTGCCGAACCAAGATGCCCAAATGGATGCCATAGCAGCCATTGTCGGGTCTTACGCATGGCATCAAGTGACCGTGATTTATGAAGACTCGGAATCTTCAGCAAGTGATGTTTTTCCTCATCTCTCTGATTCTCTGCAAAAAAATGGCTCAGAAATAGTTGAGTTTCTAGCCTTTCAACCTTCTCCTTCAGTTTCGATTTCGGAAGAGCTTCAGAGACTCAAAAATGGGCACTGCAGAGTTTTCGTGGTTCATCTGTCGTTTTCTTCGGCCGTTCGACTATTCGAGACTGCAAAAACGATTAATATGATGGAAGAAGATTACGTATGGATCACTACAGCTTCATTTACGAGCTTTGTCCATTCCGTAAATGCGTCTGTAATGGCGTCCATGCGAGGAATTGTCGGAGTTACTCCGTACGTCCCCGAAGACCAATCTCGAGAATTCAAAGATCGATTTCGTGAAACATATCCGGCCGAAAACAACGACGAGACCGGAGTATTTGCTTTCCAGGCTTATAATATTGCTTATATTGTCTGTCTTGCAATGCTTGAATCAAATGACAGTCAATCTTTAGCCAAAACTTTGCTGCATAAGTTCAAAGATCAGGCTTTAGCACCTGTACGTACATATCAGATCATCAATATTGCAGAAAGCAGATCTATAAAGCTCGGTTTTTGGTCGAAAGGGAAAGGCTTCTCCAAAACGATCGGCGAAACGGCATCATATAACGATTCCATGAAAATCCTGGATCAGCCGGTCTGGCCGGGAGGATCCTCGGCCGTACCGAAAGGGTGGAGTCTTCCGCCATTGGTTAGAGTGGGAGTTCCCATTAAATCGAGCTTCCAAAAGTTAGTTAACGTGAGCAAAGGCTCAGAAAAGTATTCGTTCAGCGGATTTACAATTACCGTCTTCCATGCAACCATCCGAACACTTCCCTATTCCGTTCTATATGAATTCATTCCTTTCCAAGGAACAAATGATGAACTGGTGGAGCAAGTGTATTTGAAGAATTTCGATGCCGCCGTCGGGGAGTTAGCTATCGTGGCCGAAAGATATCAATACGTAGAGTTCACACACCCCTACACTGAATCGGCGTTGTATATGATCGTTCCGATCCAACGGCCGACTTCTAATCGAGCATTGCTGTTCTTGAAGCCATTTACAATTACCTTATGGGTTATCATAGCTGGCATAACTGTATACAATGGCTTCGTGATATGGCTGATAGAGAGAAATCACTGCCCAGAATTGACAGGCTCCACTGCAACCCAGATAGGAACTCTGTTGGCTCAAGCTTTCACTACCCTTTTCTCTTTACATGGGGAAAGACTGCATAGCAATTTGTCTCGGATGTCAATGGTGGCGTGGCTGTTTGTGGCACTAATCATCACGCAGACGTATACGGCTAATTTGGCGAGCATACTCACTGCAGATCTTCTCGAACCTTCCATAGCCGATATCGACCTGCTTCGAACGAAGAATTCGCAAGTCGGGTTCTACAGAGATTCTTTTGTGAAACGCTTCTTGATCGAAGTTCATCATTTCCGCGACGAATTCATCACCAGTTACAACTCACCAGAAGAATATGCGCAAGCTCTCAAAAACAAATCTATAAAAGCAGTTTTCATGGAAGCTCCTTACGCAAAACTGTTTCTCGCAGAACATTGCCAGATTTTCACTAAAGCTGGGCCAACATTCAGAATTGGTGGCTTCGGATTTGTTCTTCCACGGCAATCGCCGTTTCTTCACGACCTGAACAGAGCGTTGTTAAACATTTCGGAAGGAGGAACTCTAGACGATATAGAGAAACAAATGATAGGATCTGATAACTGTGAGGGTCTCAACTCGGAGGGAGAAGAAATAGCCAGTCTCAGTCCAAGTAGTTTTTGGGTGCTTTTTGCTTTAACAGGAAGCACATCGACGATAGCTTTGATCGTATATATTTTTCGGTGCGAGTGGAACCTTCTTGGGTCTGCATTGGGCCGGAGAACCGTGTCAAAACTTATTTTTGTCACGTTGAAGAGGTGGGGGTGCAGAAGGATAAGGGTGTTTAGGAGAATGAAGGATTCGCAGAGGGATGGAAATTACAATGGAATGAATAGAAGGGATCGAGTTTAG 2556 44.84 MMASPLLLSFLIFFWLILSGKKVSGGDAIGGGKNGGGIIGAVLDESSRVGKEQRVAMDAAIKDIYEKTNKSFGLSIKDTQGVPSRAALAAAELVDSHGLKAILGPQTWEETSLVAEIGSEAQIPVLSFSESIPRWARENWPFLIQDLPNQDAQMDAIAAIVGSYAWHQVTVIYEDSESSASDVFPHLSDSLQKNGSEIVEFLAFQPSPSVSISEELQRLKNGHCRVFVVHLSFSSAVRLFETAKTINMMEEDYVWITTASFTSFVHSVNASVMASMRGIVGVTPYVPEDQSREFKDRFRETYPAENNDETGVFAFQAYNIAYIVCLAMLESNDSQSLAKTLLHKFKDQALAPVRTYQIINIAESRSIKLGFWSKGKGFSKTIGETASYNDSMKILDQPVWPGGSSAVPKGWSLPPLVRVGVPIKSSFQKLVNVSKGSEKYSFSGFTITVFHATIRTLPYSVLYEFIPFQGTNDELVEQVYLKNFDAAVGELAIVAERYQYVEFTHPYTESALYMIVPIQRPTSNRALLFLKPFTITLWVIIAGITVYNGFVIWLIERNHCPELTGSTATQIGTLLAQAFTTLFSLHGERLHSNLSRMSMVAWLFVALIITQTYTANLASILTADLLEPSIADIDLLRTKNSQVGFYRDSFVKRFLIEVHHFRDEFITSYNSPEEYAQALKNKSIKAVFMEAPYAKLFLAEHCQIFTKAGPTFRIGGFGFVLPRQSPFLHDLNRALLNISEGGTLDDIEKQMIGSDNCEGLNSEGEEIASLSPSSFWVLFALTGSTSTIALIVYIFRCEWNLLGSALGRRTVSKLIFVTLKRWGCRRIRVFRRMKDSQRDGNYNGMNRRDRV 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28581945 28585218 + BLOR11862 Blo03g00681 58145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00681 851 Gene3D - 419 527 - -
Blo03g00681 851 Pfam Ligand-gated ion channel 751 783 IPR001320 GO:0015276|GO:0016020
Blo03g00681 851 CDD GluR_Plant 418 752 - -
Blo03g00681 851 PANTHER GLUTAMATE RECEPTOR 32 844 - -
Blo03g00681 851 Gene3D - 528 660 - -
Blo03g00681 851 SUPERFAMILY Periplasmic binding protein-like I 39 411 IPR028082 -
Blo03g00681 851 PIRSF IGluLR_plant 1 343 IPR017103 -
Blo03g00681 851 PIRSF IGluLR_plant 340 813 IPR017103 -
Blo03g00681 851 Pfam Bacterial extracellular solute-binding proteins, family 3 441 750 IPR001638 -
Blo03g00681 851 CDD PBP1_GABAb_receptor_plant 41 382 IPR044440 -
Blo03g00681 851 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 844 - -
Blo03g00681 851 SMART GluR_14 416 754 IPR001320 GO:0015276|GO:0016020
Blo03g00681 851 Pfam Receptor family ligand binding region 55 335 IPR001828 -
Blo03g00681 851 Gene3D - 151 418 - -
Blo03g00681 851 SUPERFAMILY Periplasmic binding protein-like II 400 753 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00681 - - - jre:108992176 854.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00681 Blo-Chr3:28581945 Blo18g00248 Blo-Chr18:2559804 6.35E-130 dispersed
Blo17g00859 Blo-Chr17:27993819 Blo03g00681 Blo-Chr3:28581945 1.03E-90 dispersed
Blo03g00681 Blo-Chr3:28581945 Blo03g00683 Blo-Chr3:28657341 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g146 Blo03g00681 . . . . . . . . . . . . . . . . Bhi09g03482 Tan01g4350 . . Hepe01g1420 Mch11g1030 . Cla11g01726 Cam11g1796 Cec11g1817 Cco11g1823 Clacu11g1955 Cmu11g1765 Cre11g2173 . . . . Lsi04g02034 Csa04g02306 Chy07g00042 Cme07g00554 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00681 Blo_Chr03 FPKM 8.211061 9.461699 5.998864 6.464555 17.876871 18.647587 16.359102 5.835888 5.538043 4.989573