Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00683 ATGGCTTTGGCTGTTTCTTTACCTTCTTTACTGGTTTTCTCTCTGATAATTGCATCACAGACAGAAGCGCATACGAAGGATGAACGTTTTTCGATCGGAGTTGTCTTGAACAATAATTCCCGCGTCGGAAAAGAAGAGATCGTAGCCATAAAAATGGCGATGGAGGATTTTTCTATTGACGTCAATCAAAGTTTCATTCTGCACTTGAAAAACTCCGAAAGCGTACCTCTCCGGGCATTTCTTGCAGCTCGAGATCTTCTGAATACGCGGCTAGTCGAAGCGATTATAGGACTTGGATCTTGGGAAGAAGCATCCTTGGTTGCAGAAATTGGAAATGAGAAACAAATCCCAATCATATCATTATCTGGTGTAACACCAAAATGGTCGACAGAAAAGTTTCCATTTTTAGTCGAAGCTTCAAAAAACCAGATTTACCAGATGAAAGCCATCGCCTCGATAATCCGATCGTGGGGGTGGTATCAGATCAGTATAATTTACGAGGATAGAGAATACTCGGCCACTGCAGTTTTACCTCATCTCTCTTCGGCCATCAAAGAAGTCGGAGCTAGAATCAGTCAGTTCGTACCGATTCCGCCGATGAATTCTTCTTCTCTGTCGGAAAAGCTGAAGATTCTTAAACGACAGCAGTGTCGAGTTTTTGTCGTTCATATGGGTTTCGAATCGGCTGTGAGTTTTTTTCAGCATGCGAAACAGATGAACATGATGGAAAAAGATTACGTTTGGATCACTACTGATTCTTTCACTAATCTCTTTCATTCTCTGAATGCGTCGACCTTCTCAACGATGCAAGGAGTTATCGGAGTCAAGAGTTATTTCCCGGAAAATTTAAATTTTTTGAATTTTCGCAGCGGATTTCGGCCACGGTTTAGCTTGGAATACCCGGAAGAAGATAATAACGAGCCTGGATTTCACGCTCTCCAAGCTTACGACGCTGCGAAAATGGTGGCTTTGGCGATGAGAAAGAGAGAGGAAGAAGGAAGTCGGCTGTTGAACGACATCCAGCTCACTCATTTCCATGGGTTGACCGGGGAAATTCTGTTGAACAACAGAAAATTAGCGCCGTCTCCGATCTTTCAGATCGTTAATGTGATGGGAAGAAGCTATAAAAATCTTGGATTTTGGTCGGAAAAATTAGGATTCTCGGAAACATTGAAAGAAACAGAAAATTCAACTTATGAATCTTCAATGAAGATTTTAGGCCAAGTTATTTGGCCGGGATCACCCTGGTATACTCCGAAAGGATGGATGGATGTTCCGACCACCGTTCCGTTAAGAATCGCCGTTCCGACCGGAGCTATGTTCAAAGAATATGTGAAAGTGGAGGAAGAAAAGGACAAGGAGGATAACGTATCTGTTACCGGTTTGGCGGTTGATGTCTTCAAAGCAACCGTAGAAAACTTGCCATTCGATCTCCGATACGATCTCTATCCATTCAACGAGAGCTACGACAATTTGGTCAAACAAATTCTGTTGAAGAAATATGATGCAGTAATAGGGGACGTAAAAATGGTGGCGGGGCGATACGAATATGCAGACTACTCTCACCCTTATAGCGAGCCAGGATTGGTCATGGTGGTTCCAGTCCAGTCCAAAACGCGAAACAAAGGTCTTCTTTTTATGAAGCCATTTACGGGATTGATGTGGATTCTTATAGCCGTCATAACGATCTACAACGGCTTCGTCGTTTGGCTCATCGAACGCTGCCATAATCACGACCTCCAAGGCTCAAGGCTGAACCAGACAGGAACTTGGCTTTCGTTGTCGTTCACGACCTTAGTGTCATTGCAAGCTCATGGGCTCCATAGCAATTTATCAAGGATGGTAATGGTGATATGGCTGTTTGTGGCGCTGGTAATCACGCAAATCTACACTGCGAATCTGGCCAGTCTCCTCATGGCCCAGCGGCTTGAACCGACTGTTTCGGATATCCAAAGCCTGAAAGAGAGCGGGGCGACGGTTGGATACTGCACTGGAACTTTCATCCAAAGGTATTTGGTCGACCGTTTGGGATTTGAGGAGAAACATCTGAGGAACTACACGTCCCCTTTTGGCTACGCGCAGGGACTTAAGAGCAAAGAAATTGCAGCTGCTTTTCTAGAGAGCTCTGTTGCCAAGCTTTTCCTTGCTCAGTACTGCGATGGCTTCACCATTGCTGGAGACACATACAAAGTTGGAGGATTTGGATTTGCGTTTCCGATAGGGTCTCCACTAGTACCGGAAGTGACAGAAGCGATACTCAAACTTTCTGAGTCCGGGAAGCTCAACCAATTAGAAAATGACATGATTGCAGCCGAGACTTGTCACGAGCTCGAATCGAAAAACGAGGATCGAAGCCTCAGTCAGAACAGCTTTTGGGTGCTCTTCGTGTTAACGGGAGGCATGTCAACTCTTGCACTATTAGCATATGTTATTAGAGCTTGGACTAAGATTAGTGTTGATTACAAGAGTATTAGAATTCTAATCCTAAGGCTTGTGAAATATTGGGGGCAAAATAGTAGAAGATTCTCGAGAAAAATAAGTGATTTACCTCAAAATGTTCATCCAAATCATCAAAATGAAATCCAATTGACTTAG 2595 43.85 MALAVSLPSLLVFSLIIASQTEAHTKDERFSIGVVLNNNSRVGKEEIVAIKMAMEDFSIDVNQSFILHLKNSESVPLRAFLAARDLLNTRLVEAIIGLGSWEEASLVAEIGNEKQIPIISLSGVTPKWSTEKFPFLVEASKNQIYQMKAIASIIRSWGWYQISIIYEDREYSATAVLPHLSSAIKEVGARISQFVPIPPMNSSSLSEKLKILKRQQCRVFVVHMGFESAVSFFQHAKQMNMMEKDYVWITTDSFTNLFHSLNASTFSTMQGVIGVKSYFPENLNFLNFRSGFRPRFSLEYPEEDNNEPGFHALQAYDAAKMVALAMRKREEEGSRLLNDIQLTHFHGLTGEILLNNRKLAPSPIFQIVNVMGRSYKNLGFWSEKLGFSETLKETENSTYESSMKILGQVIWPGSPWYTPKGWMDVPTTVPLRIAVPTGAMFKEYVKVEEEKDKEDNVSVTGLAVDVFKATVENLPFDLRYDLYPFNESYDNLVKQILLKKYDAVIGDVKMVAGRYEYADYSHPYSEPGLVMVVPVQSKTRNKGLLFMKPFTGLMWILIAVITIYNGFVVWLIERCHNHDLQGSRLNQTGTWLSLSFTTLVSLQAHGLHSNLSRMVMVIWLFVALVITQIYTANLASLLMAQRLEPTVSDIQSLKESGATVGYCTGTFIQRYLVDRLGFEEKHLRNYTSPFGYAQGLKSKEIAAAFLESSVAKLFLAQYCDGFTIAGDTYKVGGFGFAFPIGSPLVPEVTEAILKLSESGKLNQLENDMIAAETCHELESKNEDRSLSQNSFWVLFVLTGGMSTLALLAYVIRAWTKISVDYKSIRILILRLVKYWGQNSRRFSRKISDLPQNVHPNHQNEIQLT 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28657341 28660725 + BLOR11864 Blo03g00683 58147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00683 864 CDD PBP1_GABAb_receptor_plant 31 391 IPR044440 -
Blo03g00683 864 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 861 - -
Blo03g00683 864 Gene3D - 37 362 - -
Blo03g00683 864 SMART GluR_14 432 768 IPR001320 GO:0015276|GO:0016020
Blo03g00683 864 CDD GluR_Plant 430 769 - -
Blo03g00683 864 PIRSF IGluLR_plant 1 860 IPR017103 -
Blo03g00683 864 SUPERFAMILY Periplasmic binding protein-like I 27 422 IPR028082 -
Blo03g00683 864 Pfam Bacterial extracellular solute-binding proteins, family 3 455 766 IPR001638 -
Blo03g00683 864 PANTHER GLUTAMATE RECEPTOR 23 861 - -
Blo03g00683 864 SUPERFAMILY Periplasmic binding protein-like II 405 766 - -
Blo03g00683 864 Gene3D - 696 734 - -
Blo03g00683 864 Gene3D - 735 766 - -
Blo03g00683 864 Gene3D - 427 544 - -
Blo03g00683 864 Pfam Receptor family ligand binding region 49 370 IPR001828 -
Blo03g00683 864 Pfam Ligand-gated ion channel 767 799 IPR001320 GO:0015276|GO:0016020
Blo03g00683 864 Gene3D - 545 674 - -
Blo03g00683 864 Gene3D - 142 383 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00683 - - - qsu:112005564 904.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00683 Blo-Chr3:28657341 Blo07g00766 Blo-Chr7:24794939 2.16E-136 dispersed
Blo03g00681 Blo-Chr3:28581945 Blo03g00683 Blo-Chr3:28657341 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g145 Blo03g00683 . . . . . . . . . Cma01g01234 Cma09g00831 . . . Cpe06g00662 Cpe02g00682 Bhi09g03484 . . . Hepe01g1422 Mch11g1029 . Cla11g01725 Cam11g1795 Cec11g1816 Cco11g1822 Clacu11g1954 Cmu11g1764 Cre11g2172 . . . . Lsi04g02033 Csa04g02305 Chy07g00041 Cme07g00553 . . . . . . . . . Cmo01g01287 Cmo09g00824 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001228 1 5 2 2 1 0 0 2 0 3 2 3 2 3 3 2 2 1 2 2 3 3 4 2 2 3 2 4 3 4 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00683 Blo_Chr03 FPKM 3.28853 4.278109 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0