Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00704 ATGGTCTTCCTCTCCCTCCTCCATCTTCTTCTTTCTCCGCTTTTTCCTCTCTCTGGAACTTCCGCCATGCCAAACGATGACGTCGCCTCCACTTCCACCTCTTCTTCCGATTTCGCAAACGACGCTGTTATTTCTCACTCGTCTTCTTCGTCTTCATCTTCGTCGTCTTCTTCTTCGATCATCAATTACCTCTGGATTCCTCTCTTGATGTCTCTCTCCAAAGAGCTCAGCCTCGCTAGGGCGGCTCAGCCGTCCAGCATCCTCATGCCGACTCAGCTGCAGCTCGATTCCACTAATTTCGGTCCGAATTGTCCGGCTTTGAATCCGAAGCTGAATTTCCAGCCGGTGATCGGAATTCTTAGCCATCCGGGAGACGGTGCCTCCGGAAGGCTCAGTAATGCAACGAATGCTTCTTATATTGCTGCTTCTTATGTTAAGTTCGTTGAATCGGCTGGGGCTCGTTGGTTGACTAGTTTCCCACCACATACGTATGCCCATCCACTGGGAACTTGTGATGTTGATGCTAAGTTGCAGAAGCTCAATCTGGTCAATGGAGTGCTCTTCACTGGGGGCTGGGCAAAGCGTGGTTTGTACTATTCTGTTGCAGAGAAAATCTTTCAGGAAATTCTTAAGAGGAACGATGCTGGAGACCACTTCCCTTTATATGCTATCTGCTTAGGTTTTGAAATTTTGTCAATGATCATCAGCAAGGATAGGGACATTCTTGAGTCCTTCAATTCATCAGATATGGCTTCTACTCTCCAATTTGTGGAGAACATCAACGTTAAAGGAACCGTCTTCAATAGATTTCCACCGGATTTGCTAAGAAAGCTGGAGACAGACTGCCTCGTCATGCAAAATCATCGTTATGGTATTTCACCTAAAAGGTTTCAAGGAAATCAGGTGTTATCCAGTTTTTTTAAGATCTTGACAACATGTGTTGATGGAGATGATAAGGTTTATGTCTCCACAGTGCAAGGACATACATATCCCGTGACTGCATTTCAATGGCACCCTGAGAAAAATGCCTTTGAATGGGGTTTTTCAGCAATTCCTCACTCGGAAGACGCCATTGAAGTAACGCAACATGTCGCAAACTATTTGGTCAGAACTAGGCTGCTGGCTGCTGGCTGCTGGCTGCTGGCTGCTGGCTGCTTGAGTGTTCATGGAAGTTGCATTCCTCAGAAATTTATGAACACGTCAAATGAGGCTAGGAAGTCGCTTAATAGACCGTCTGCTCGGAAAGTCCTTGATAACTTGATCTATAACTACAGTCCAACTTATTGCGGGAAGGCAGGGAAAGGATATGATGAAGTTTACATCTTCGAATCGCCCTCGACCAAGCTTTGA 1350 46.07 MVFLSLLHLLLSPLFPLSGTSAMPNDDVASTSTSSSDFANDAVISHSSSSSSSSSSSSSIINYLWIPLLMSLSKELSLARAAQPSSILMPTQLQLDSTNFGPNCPALNPKLNFQPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESAGARWLTSFPPHTYAHPLGTCDVDAKLQKLNLVNGVLFTGGWAKRGLYYSVAEKIFQEILKRNDAGDHFPLYAICLGFEILSMIISKDRDILESFNSSDMASTLQFVENINVKGTVFNRFPPDLLRKLETDCLVMQNHRYGISPKRFQGNQVLSSFFKILTTCVDGDDKVYVSTVQGHTYPVTAFQWHPEKNAFEWGFSAIPHSEDAIEVTQHVANYLVRTRLLAAGCWLLAAGCLSVHGSCIPQKFMNTSNEARKSLNRPSARKVLDNLIYNYSPTYCGKAGKGYDEVYIFESPSTKL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29825808 29833108 - BLOR11885 Blo03g00704 58168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00704 449 Gene3D - 110 443 IPR029062 -
Blo03g00704 449 Pfam Glutamine amidotransferase class-I 179 342 IPR017926 -
Blo03g00704 449 PANTHER GAMMA-GLUTAMYL HYDROLASE 1 75 370 - -
Blo03g00704 449 PANTHER GAMMA-GLUTAMYL HYDROLASE 1 402 447 - -
Blo03g00704 449 SUPERFAMILY Class I glutamine amidotransferase-like 136 351 IPR029062 -
Blo03g00704 449 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 75 370 IPR015527 GO:0008242
Blo03g00704 449 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 402 447 IPR015527 GO:0008242
Blo03g00704 449 ProSiteProfiles Gamma-glutamyl hydrolase domain profile. 106 443 IPR015527 GO:0008242
Blo03g00704 449 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 130 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00704 K01307 GGH; gamma-glutamyl hydrolase [EC:3.4.19.9] - mnt:21386200 507.679
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g89 Blo03g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0202 Cone9ag0233 . . . . . . . . . . Bpe11g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004965 1 2 1 0 1 0 1 1 0 1 0 1 1 1 2 1 1 2 1 1 3 2 1 2 2 2 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00704 Blo_Chr03 FPKM 19.60339 23.730274 18.702316 21.185932 47.415455 32.304546 46.548965 6.737386 6.099354 6.406054