Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00725 ATGGGCGCCGAAGAAGACAACGTCAGAGGGACGGTTTCCGGTCACCAGCACCATCCTCAACCGCTTGATCAGCCTCAGTACGGAACGTTTCAAGGCGTTGCCAATTATCCTCCTCCCCCACCTGTCGTGGGCTTTCCTCAGCCCGTTCCTCCCCCTGGCTTAGCCGATCCTCCGCCTCCTTCTCCGGCTTATGCTTTCGGCTACCAGACCGTCCCTGGTTATGAGGTTGCTGAAGGTAGACCTGTAAGACAACGTCGTCTTCCCTGTTGTGGTATTGGTTGTGGCTGGTTTCTGTTTATCACCGGTTTCTTCCTCATTGGCTTTCCTTGGTTAGTAGCAGCAATAGTTTTACTTTGCAACCGGCATAGGATGGACTACAGAGAGAAACCTGGATATATTGCGTGTGTAATTGCTGGTATTGTCGTCATAATTGCAATAGTTCTGGGCGTCACGAAGGGAACTCATACTTGGTGA 474 51.48 MGAEEDNVRGTVSGHQHHPQPLDQPQYGTFQGVANYPPPPPVVGFPQPVPPPGLADPPPPSPAYAFGYQTVPGYEVAEGRPVRQRRLPCCGIGCGWFLFITGFFLIGFPWLVAAIVLLCNRHRMDYREKPGYIACVIAGIVVIIAIVLGVTKGTHTW 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30544314 30546530 - BLOR11906 Blo03g00725 58189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00725 157 PANTHER 60S RIBOSOMAL PROTEIN L18A-LIKE 12 157 IPR044804 -
Blo03g00725 157 MobiDBLite consensus disorder prediction 1 30 - -
Blo03g00725 157 MobiDBLite consensus disorder prediction 13 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00725 - - - mnt:21407376 144.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00725 Blo-Chr3:30544314 Blo07g00973 Blo-Chr7:29213515 1.29E-21 dispersed
Blo01g00901 Blo-Chr1:18487222 Blo03g00725 Blo-Chr3:30544314 4.84E-27 wgd
Blo10g00714 Blo-Chr10:22734181 Blo03g00725 Blo-Chr3:30544314 6.12E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g877 Blo03g00725 . . . Bpe09g00276 . . . . . . . . . Sed05g2485 . . Bhi09g03590 Tan01g4232 Cmetu07g0229 . Hepe01g1484 Mch11g0963 . . . . . . . . Cone6ag0230 Cone9ag0263 . . Lsi04g01956 . . . . . . Bda12g00800 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002437 3 2 3 3 4 1 2 2 0 2 1 1 2 2 2 1 1 4 0 1 2 2 2 2 2 2 1 4 3 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00725 Blo_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0