Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00727 ATGGGTTCTCACACTACTATTTGTTCATTATCTTCTTCTTCTTCTTCTTCGTCGTCTTCTAAGCTCTTTTTTCGCCAGCTCTATGAGAAGGAATCGTCCACCTACACCTACCTCCTGGCGGATATTTCCCATCCTGATAAGCCTGCACTGTTGATCGATCCAGTGGACAAGACAGTAGATAGGGATCTGAATTTAATTCAAGAATTGGGGCTGAAACTGATCTACGCCATCAACACCCATGTCCACGCTGATCATGTCACTGGCACTGGCTTGATTAAGAGTAAAGTTCCCGGCGTGAAATCCGTCATTTCCAAAGCCAGTGGTTCAAAGGCCGATGTTGTTATTGAGCCAGGAGACAAAATCTGCTTCGGTGATCTATCGCTCGAGGTTCGTGCTACTCCAGGTCACACATTAGGTTGCGTTACATATGTCACCGGGGATGGACCTGATCAGCCACAACCTAGAATGGCATTTACAGGGGACGTTTTGTTGATCAGAGGGTGCGGGAGGACAGATTTTCAGAAACAACTCAAGTTTTGTGCTAACCTTTTGCAGGGTGGAAGTTCGAAGTTGCTCTATGAATCGATCTTTACGCTGCCGAAAGACACCTTAATCTATCCTGCTCATGACTACAAAGGATTTACAGTCAGCTCTGTGGGAGAGGAGATGCTCTATAATCCTCGTCTTACAAAGGATCAGGAAAAATTCAAAAGCATCATGGAAATTGTTCGTTCTTACCTTAGTGAACTGGAAAATACCCTCTTTAACACTCAATTTGCCTTTTTTTTTTTGGTCACAGATTTGAACCTTCCTTACCCAAAGATGATGGATGTAGCAGTTCCAGCAAATATGGCTTGTGGGTTGCAGAATCCGATTTCCGATCCCTAA 888 44.26 MGSHTTICSLSSSSSSSSSSKLFFRQLYEKESSTYTYLLADISHPDKPALLIDPVDKTVDRDLNLIQELGLKLIYAINTHVHADHVTGTGLIKSKVPGVKSVISKASGSKADVVIEPGDKICFGDLSLEVRATPGHTLGCVTYVTGDGPDQPQPRMAFTGDVLLIRGCGRTDFQKQLKFCANLLQGGSSKLLYESIFTLPKDTLIYPAHDYKGFTVSSVGEEMLYNPRLTKDQEKFKSIMEIVRSYLSELENTLFNTQFAFFFLVTDLNLPYPKMMDVAVPANMACGLQNPISDP 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30551441 30555112 - BLOR11908 Blo03g00727 58191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00727 295 CDD POD-like_MBL-fold 23 211 IPR044528 GO:0006749|GO:0050313
Blo03g00727 295 Gene3D - 23 253 IPR036866 -
Blo03g00727 295 SMART Lactamase_B_5a 33 209 IPR001279 -
Blo03g00727 295 PANTHER PERSULFIDE DIOXYGENASE ETHE1 260 290 - -
Blo03g00727 295 Pfam Metallo-beta-lactamase superfamily 33 209 IPR001279 -
Blo03g00727 295 SUPERFAMILY Metallo-hydrolase/oxidoreductase 33 240 IPR036866 -
Blo03g00727 295 PANTHER BNAC03G69760D PROTEIN 260 290 - -
Blo03g00727 295 PANTHER BNAC03G69760D PROTEIN 6 241 - -
Blo03g00727 295 PANTHER PERSULFIDE DIOXYGENASE ETHE1 6 241 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00727 K17725 ETHE1; sulfur dioxygenase [EC:1.13.11.18] - tcc:18594477 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00727 Blo-Chr3:30551441 Blo13g00822 Blo-Chr13:30947804 1.07E-16 dispersed
Blo03g00727 Blo-Chr3:30551441 Blo02g00447 Blo-Chr2:6124000 1.33E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g876 Blo03g00727 . . . . . . . . . . . . . Sed05g2484 . . Bhi09g03592 Tan01g4230 Cmetu07g1493 . Hepe01g1486 Mch11g0961 . . . . . . . . Cone6ag0228 Cone9ag0261 . . Lsi04g01953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008021 0 1 1 1 0 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00727 Blo_Chr03 FPKM 1.418057 1.770002 1.111678 1.59774 1.709239 1.109035 1.32218 2.312503 2.426344 3.398199