Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00728 ATGGATTTCATGGAGGTTACTATGCTGCATCACGCTGGAATTGTGCTGCTGCTTTTATGGCTCCTTTCTACTTACAACTGCTGTCACCCTATCGCCTATCTCTTCTGTCTCATATATTTATACCTGGTTCATGAGCGGTTTATCATGCGATTACGAAGGAAACTACAGTATGAGGAAAGGAGGCAGGGTAATCAGAGAAGGTCTAACAGGTTACTCTTGTTAACGCACTTTTTTTTCTTAAATGTACTCACTGATTCGGAAACTGTAAGGTGGTTGAATCATGCAGTTCAAAAGATATGGCCAATTTGTATGGAGAATATAGCTTCGCAGAGCATTCTTCTTCCCATCATACCTTGGTTCTTGGAGAAGTACAAACCATGGACTGCCAAGAAAGCTTTGGTTCAGCATCTTTACTTGGGAAGAAATCCTCCTATGTTCACAGAGATGAGAGTTCTAAGCGAATCATCTGAAGATGATCACTTGATTCTAGAGCTGGGAATGAATTTTCTCACGGCTGATGACATGAGTGCCATACTGGCTGTAAAGCTACGAAAAAGACTTGGATTTGGGATGTGGGCTAAGCTGCATTTAACAGGCATGCATGTAGAAGGGAAGGTGTTGGTTGGGGTGAAATTCCTTCAAACATGGCCGTTTGTGAGTCGTCTAAGGTTATGTTTTGCTGAGCCTCCGTACTTTCAAGTGACTGTGAGGCCTATCTCTACACATGGACTTGATGTAACAGTTCTTCCGGGGATTGCAGGGTGGCTAGATAAGCTTCTGTCCATTGCATTTGAACAGACTCTCGTTGAGCCCAATATGCTAGTTGTTGACATGGTGAAATTTGTTTCCCCGCATCCAGCCGAAAGTTGGTTCTCTGTGGACGTGAAGGAACCAGTTGCTTATGCTAAATTAGAAGTAATTGAAGCAAGTGATATGATACCATCGGATCTAAATGGATTGGCAGATCCATACGTGAAAGGTCAATTAGGACTCTACAGATTCAAGACTAAGATTCAAAAGAAAACGCTATTTCCAAAATGGCAAGAGGAATTCAATATTCCTATTGTTTCATGGGAATCAGAAAATGTGCTGGCTATTGAAGTTCTTGACAAGGACCATTTTTCAGATGATCTGCTTGGAGTCTGTTCCATTAACATTACTGATAAGCGGGATGGCCAGCGACACGACATGTGGTTGCCTCTTCAAAAGGTTAAGACTGGGAGATTGCATATTGTAGTCACGATATTCGAAGAAAATGGAGAGGTCGATAATCAACGTAACAACAAACCAGAAGTTGATATGTTTGAGCCTCAAAAGGGCGGTGGTCCGGTACTGGCTGTTTCTTCTAAAAAAGCTCAGATAGTTGCCGATAATTTGAAACCCATCAACATCGAAGGGCAAAAAGAGACTGGAATATGGGTCCATCAACCGGGAAGTGAAATCTCGAAGACTTGGGAACCGAGAAAAGGGAAGAACCAACAACTTGACACTGAGGTTGAAGGGAAGGCTAATGATTCCATTACAATTACTGCTCAATCGGGAACGCTCAAAGATAGCAACAGCAGTGGAGATGAAAATCCAGAGGAAAAACATAGAATGAAACCCATTCGGAGGGGATTGAGGAAGATAAGTTCTATTTTCCACAGGAGTCCGAAAAAAGATGAACATGTTATGAGTTTAGTCCAGTCCGTTCAATCCCCATATTCAAATGTCAGAGCAGTTAATGCAAAAGGAGGAGGAGGAGTTAAGCTTATTGTCGAAGAAAAGGTGGTTATAGAAGAGAAAATTACTGTTTCTGGTCTGGATAAGGTAGCAAAAGTAGGAAAGACAAGTAGTGAAGAAAGTGATCCAGATAATCCAAATAAGGGTGATGCAAAAGCCAAGTCTAGGAACATTTTCCGACACGTGTTTTCGCAGAAAAAGTGTAGAAGCTTACCGGGCCATTCTTCCAGAACGAAGGGAAGAGATGTATTAGTGGATTCTGACTTGTCTGAAGAAGATGAAAATGTGTCATCCTCCCCTCGCCCGCATCCTCCTAAAGTTGAAGAGATTACAAATGTTTCTGAATCTCCAGCCAATGACTCGTCGGATGCGAAAGAGCAAGTGATCGAACCGAATTCAAACCGAACAAGCGGGGGGAGTAGTGATGGATTTGAAAAGATTGATTACAAAGACAAAACACAGCCCTGA 2190 42.24 MDFMEVTMLHHAGIVLLLLWLLSTYNCCHPIAYLFCLIYLYLVHERFIMRLRRKLQYEERRQGNQRRSNRLLLLTHFFFLNVLTDSETVRWLNHAVQKIWPICMENIASQSILLPIIPWFLEKYKPWTAKKALVQHLYLGRNPPMFTEMRVLSESSEDDHLILELGMNFLTADDMSAILAVKLRKRLGFGMWAKLHLTGMHVEGKVLVGVKFLQTWPFVSRLRLCFAEPPYFQVTVRPISTHGLDVTVLPGIAGWLDKLLSIAFEQTLVEPNMLVVDMVKFVSPHPAESWFSVDVKEPVAYAKLEVIEASDMIPSDLNGLADPYVKGQLGLYRFKTKIQKKTLFPKWQEEFNIPIVSWESENVLAIEVLDKDHFSDDLLGVCSINITDKRDGQRHDMWLPLQKVKTGRLHIVVTIFEENGEVDNQRNNKPEVDMFEPQKGGGPVLAVSSKKAQIVADNLKPINIEGQKETGIWVHQPGSEISKTWEPRKGKNQQLDTEVEGKANDSITITAQSGTLKDSNSSGDENPEEKHRMKPIRRGLRKISSIFHRSPKKDEHVMSLVQSVQSPYSNVRAVNAKGGGGVKLIVEEKVVIEEKITVSGLDKVAKVGKTSSEESDPDNPNKGDAKAKSRNIFRHVFSQKKCRSLPGHSSRTKGRDVLVDSDLSEEDENVSSSPRPHPPKVEEITNVSESPANDSSDAKEQVIEPNSNRTSGGSSDGFEKIDYKDKTQP 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30579878 30586787 + BLOR11909 Blo03g00728 58192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00728 729 MobiDBLite consensus disorder prediction 607 729 - -
Blo03g00728 729 PANTHER C2 DOMAIN-CONTAINING PROTEIN-LIKE 4 671 - -
Blo03g00728 729 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 85 279 IPR031468 GO:0008289
Blo03g00728 729 MobiDBLite consensus disorder prediction 482 498 - -
Blo03g00728 729 MobiDBLite consensus disorder prediction 499 521 - -
Blo03g00728 729 CDD C2 303 401 - -
Blo03g00728 729 ProSiteProfiles C2 domain profile. 285 399 IPR000008 -
Blo03g00728 729 Gene3D C2 domain 285 417 IPR035892 -
Blo03g00728 729 MobiDBLite consensus disorder prediction 686 715 - -
Blo03g00728 729 MobiDBLite consensus disorder prediction 607 631 - -
Blo03g00728 729 SMART C2_3c 301 398 IPR000008 -
Blo03g00728 729 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 4 671 - -
Blo03g00728 729 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 418 IPR035892 -
Blo03g00728 729 MobiDBLite consensus disorder prediction 482 537 - -
Blo03g00728 729 Pfam C2 domain 303 401 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00728 - - - mnt:21403674 858.211
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00728 Blo10g00713 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00728 Blo-Chr3:30579878 Blo10g00706 Blo-Chr10:22568544 5.07E-16 dispersed
Blo03g00728 Blo-Chr3:30579878 Blo03g00730 Blo-Chr3:30821762 0 proximal
Blo10g00713 Blo-Chr10:22726028 Blo03g00728 Blo-Chr3:30579878 0 wgd
Blo19g00065 Blo-Chr19:1613476 Blo03g00728 Blo-Chr3:30579878 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g874 Blo03g00728 . . . . . . . . . . . . . . . . Bhi09g03594 . . . Hepe01g1487 . . . . . . . . . Cone6ag0227 Cone9ag0260 . . Lsi04g01952 . . . . Blo10g00713 . Bda12g00801 . . Bma07g01119 . . . Cmo09g00683 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004301 1 2 4 3 2 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00728 Blo_Chr03 FPKM 3.559322 3.976706 0.0 0.134423 0.169078 0.0 0.13445 0.0 0.0 0.0