Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00729 ATGATCTCGAACATACTTAGAATTGGTTTATCCCGGGCTGGTAGGATGCAGGCGTTGAAAGCCTCGCTGAGATGGGATGGAGGAGAAGGCATGTTTGGCCCAGCAGAGCCATATGAGAGTGAGAGATTGCCGGCCTCGTTGTCTTCTGAAATTCAAAAATTCCTTCGCGTTGCGAACGTGATCGACAAAGAGGAGCCTCGCATTGCATATCTCTGTCGCTTTCATCCATTTGAAATATCTCATAACAAGGACAAAAATTCGACTGGGAGAGGTGTTCGACAATTCAAAACCTCCCTTCTTAATCGGCTACGACAGGATGAAGAATTTGCCTTGGCAATTTCTGATAAAGATGACGTGTTTGTGCCGTACAATATTCTTCCTCTCGATCAAGGAGGTATTCAACAAGCAATTATGCAACAACCTGAGATTAAGGCTGCAGTTGCACTTATTGATGGTAATGTAGCCAACCAGAAGGAGCATCTAATTCTTCTTCTTGCCAACTTACAAGTTCGTCTAACTAAAAAGCAGAAATCTATGTCTAAGTTTGGAGATGGTCCAGTGGATGAGCTAATGAGAAAGTTCTTCAAGAACTACACAACTTGGACCCAATTTTTGGGAATAAAAAGCAACATACGATTGCCCTACGTGAAACAGGAAGCACAGCTATACAAACTCTTATATATTGCACTTTACCTTCTTATGTGGGGAGAGGCCGCCAATTTGAGATTCATGCCAGGGTGTCTATGTTATATTTTTCACCATATGGTATATGAGTTACATAGTATGTTGACTGATGCGGCGGTTAGCTTAACAACATTGGAAAGAATCATGCCATCATATGAACGTGGACCAGAGTCTTTTCTTAACAAAGTAGTTTCACCCATCTACAGGGTTATAAAAGAGGTATTGTTAAGTCTGCAGTTCTGCTCCACATTTGAAGTTTTTACTTTTTTGTTTAAAAATCTAAAGGAACAGTGGTTGGGAAAAACTAATTTTGTAGAGATTCGTTCATTTTGGCAGATTTTTAGGAGTTTTGATAGGATGTGGAGCTTTTTTATTTTATCCCTTCAGGCACTGATTATTATTGCATGCCATGAATTGGGATCTCCACTTCAACTTTTTGACACAGTCATATTTGAGGACATAATGAGCATTTTTATTACATCTTCAGTTCTTAACTTATTACGAGCAATTCTTGACATTGCCTTCACATGGAAAGCGAGGCAAATTATGGTTTCTTCTCAGAAAAAGAAATATGCTATAAAGCTTCTTTTGGCAATGATATGGACTATTGTTCTTCCAGTTTGTTATGCAAATGACATGCGAAAGTATAAATGTTTCTCCACACGCTCTAGAAGCTGGACTGCACAGTGGTGCTTTTCGCCTTATATGGTTGCTGTTATGATTTACTTAAGCAACAACGGAGTTGAGCTGGTTCTGTTTTTGGTTCCCGCAGTTGGCAAGTATATTGAGATTTCAAATGACAGAATATGCACTCTGTTGTCTTGGTGGACAGAGATTAAACCACTCATCGAACTAACAAAGAGGATAATGAAAATTGGTGTAAGGAGCTACGACGTGCATGAGCTTTTTCCAAAGGTCAAAAGTAATGCTGGCGCAATATTGGCTGTATGGGCTCCTATAATTGTTGTGATTTTTCTGTGTCATATTTATTTCAGGTGTATTTTATGGACACAGATATGGTACTCAGTGTTCTGCACAGTATGTGGTGGTATTTATGGAATTTTTAACCATCTTGGGGAGTTTACTGTAGATTCAATGCTGAGAAGTAAATTTCACTCCTTGCCTTCTGCATTCAACACTTCCTTTTTCCCTCGGCCTATGAAGCATAATCGAAAGAAAAGAAGAGGTCTATTTCGCAGTAGATTACAGAAGCGCTTAGAAAACCAAGGAAATGACCTCGCAAAGTTTGTTCTTGTATGGAATCAAATTATGCGTAGCTTTCGCTCAGAGGATTTAATAAGCAACAGGGAGTTGGATTTGATGGTTATACCAATATCATCAGAGTTACTTTCTGGTGTGATTCATTGGCCTGTTTTTCTATTAGCAAATAAGATTTCAACAGCGATGAGCATTGCTAGAGATTTTCCAAGGAAGGATGAGTCTCTTTTGAGAAAGTTAAAAAAGGACAAGTATATGTACTGGGCCGTAAAAGAGTGCTACGAATTGTTGAAATACACTCTCGAAATTCTCATTGTCGGTGATCTGGAGAAGAGGATAATATCTGCTCTAATAAATGAAATTGGAGTAAGTATTCAAAGATCGACTCTTCTTCTGGACTTCAAGATGACTGTACTTCTAGCTCTCCTGGCTAAAATTATTGAGTTCATTGAACTTTTGGTTGCGGGGAATAAGGAGCACCATGAAAAAGTTGTTAGAGTTCTTCAAGATATTTTGGAGCTTGTAATTGACGATATGATTGCTGATTGTTCAAGAATTCCGGATTTGGATAACTTCTCCCAACAGATAGAGAATGAATATATTGATTTTTCTAGAAATATCGACCCACAATTATTTGAATCGTCTGCTGAACGGAATTCAATCCATTTTCCTTTGCCTGATAGTGGCTCACTCCATGAGGAGGTGAAGCGCTTTCTGATGCTGCTTACTGTGAAAGATACAGCCATGGATGTACCTGAAAATTTAGAAGCTAGGAGGTGCCTTTCGTTCCTTGCAACCTCCATGTTTATGAATGTACCCAGTGCTCCTCTCGTACGCAATATGATGTCATTCGGGTATCCATGTCTCTGTGTTGCTTATGTTGAGGAGAGAGAAGACGAAACAGGAGTAAAACCTCCTGTTTACTCATCAAAGCTGGTGAAAGTTTTAAGTGGATTTGATCAGCTTCCAGGTCCACCTAACGTTGGAGAGGGAAAACCTGAAAACCAAAATCATGCTATAATTTTCACTCGCGGGGAAGCCCTCCAGACAATTGATATGAACCAAGAATGTTATTTGAAAGAAGCATTCAAAATGAGAAATCTTCTGGAAGAATTTCTTCAGCAAAATAGGCACCAGCCTCCTACTATAATTGGTTTGAGAGAACACATCTTCACAGGAAGTGTTTCTTCACTAGGATGGTTTATGTCATATCAAGAGACTAGCTTTGTCACCATTGGTCAACGGCTTCTCGCCAATCCTCTCCGGGTGAGATTCCATTATGGACATCCTGATGTATTTGACCGAGTATTTCACATAACAAGAGGTGGTGTGAGCAAGGCTTCAAAAACAATTAACTTAAGTGAGGATGTTTATGCTGGTTTATCAGTTCTTGGAATATATGTATTCCTTTATGGTCAGCTGTACCTTGTTCTAAGTGGGTTGGAAAAAGCTCTTCTACTTGAAGCTAGAATGCATAACATCAAATCTTTGGAAACTGCTCTTGCCTCTCAATCATTCATTCAACTGGGGCTTCTTACAGGCCTACCTATGGTGATGGAAATAGGCCTTGAAAAAGGATTTCTCACTGCTCTCAAAAACTTTGTCCTCATGCAGCTGCAACTAGCTGCTGTGTTTTTCACCTTTTCCCTTGGAACAAAAATTCATTATTACGGCCGAACAATTCTCCATGGAGGAGCTAAGTATCGACCAACTGGGCGTAAACAAGGTGGTATAGGAATTCAACAGGATAAAAGTTGGCATTCTTGGTGGGATGATGAACAAGCTCATCTTCGAAATTCCAGACTAAGCTCTCGGTTGATTGAAATACTTCTTTCCCTTCGGTTTTTCATATACCAATATGGTCTGGTGTATCATCTAGACATCTCCCGGCAAAGCAAAAACTTTCTGGTTTATGTTCTTTCATGGGCAGTCATTGTTGCAATTTTCTTATTAGTCAAGGCAGTAAACATGGGAAGGCAACAATTTAGTGCAAATTATCACTTTGCATTCAGAATATTCAAGGCCTTCCTCTTCCTCGGAGTTGTTTCGGTTATTATCACTCTATCTATCATCTGTGAATTCTCTTTCATGGACATGGTGGTTTGCTGTCTTGCTTTCTTACCAACTGGATGGGGCTTGATTTTGATTTCACAAGCCATGCAGCCGAAATTGGAGAAAGCCAGACTGTGGGGATTTGCTCAGGTGCTGGCCAAGTCGTATGATTATGGAATGGGAATCGTCCTATTTGTGCCTTCCAGACTCGTTTCCTCTTCAATGAAGCATTTAACAGGCACCTGCAAATCCAACCCGTTCTCCCTGGGAAGAAGAAGAAGATTTAAGAATTTCCAACAAATTGTTTTCCTGATCGACAGAGCTGCTGGCGGACCTTCTGAATCGAAAAAGAGAATGATTTTGCGATCAATCTGCAGAGGAAAAGTTCAGAGGTTCAATTCAATCGTTGCTCTGTCTACGTCAATTTTTCCTCTTTCTTTATCTTCTTCTTCTTCTTCTTTGGCTGCCATTTCTACATCTGCGTTGCCGAACCAAGCCGGTTCTACTACCGACAGGCTCAACCACAAAGACTGGTTGACCCCAAAAGAAGTTCTTAAAACCGTTGAACAAATCAGAGACCCCGACTCGCTGATCGCATACTTGGATCACTACTCCAAGCGCAAGGACTACTGCCCAAATGAAGCTATCTACACTTCGATCATATCCAAACTCGCACAAGCACGCCGATTTGATGAAATTGAAAATGTGATGCAGAGAATCAAAGCCGAAAGGAATTGCCGATTGTCCGATGAGTTTTTCTACCACGTTATCAAGACTTACGGCAATGTCGCTGGTCGGATAACCAGAGCGATGGAGACGCTTTACGATATGCCGGATTATAATTGCTGGCCCACGGTGAAAATTTTCAACTATGTTCTCAATTTGCTAGTTTCGGCGAAACTATTCGAAGTTGTTCATGAGGTTTATCTTTCTGCTCCGAAATTAGGGATTGAGATCGATGCTTGTTGCCTAAATATACTGATCAAAGGGTTGTGCGAAAGGGGGAATTTGGAAGCTGCATTCTATGTGCTCGACGAATTTCCAAAACAAAAGTGCAGGCCCAATGTGAGAACTTTTTCGACTCTAATGCATGGGTTATGCGTGAAAGGGAAGGTGGATGAAGCATTTGAGCTTTTAGAGAGAATGGAGAAAGAAAGAGTTTCTGCAGATACTATAACGTTCAACATACTGATTTCAGGGCTGAGAAAACATGGGAAAGTTGAAGAAGCGATTGGTCTTTTGGAGAAGATGAAATTCAAAGGCTGTCATCCAAATGACGGTTCATATAACGAGATTCTGTATGGGCTGCTTGATGAAAAGAGCTTCATCAAGGCAAAAAGGTTGGTGGGTATGATGATTTTAGAGAGATTTGATCCAAGTTTTGTTTCTTACAAAAAGTTGATATCTGGGTTGTGTGGAGAAAATCGAATTGAAGATTTGGATTGGGCGCTGAAAAAGATGGTGAAGCAAGGTTTTCTACCGAAAATGGGGATGTGGAGGCAGATTATAAAGTGTGTTTTTTCAGCAAATGGGTTTTGTATTAGATTTCCTTACAAAGAAATAGTCGAGAACTAG 5529 40.24 MISNILRIGLSRAGRMQALKASLRWDGGEGMFGPAEPYESERLPASLSSEIQKFLRVANVIDKEEPRIAYLCRFHPFEISHNKDKNSTGRGVRQFKTSLLNRLRQDEEFALAISDKDDVFVPYNILPLDQGGIQQAIMQQPEIKAAVALIDGNVANQKEHLILLLANLQVRLTKKQKSMSKFGDGPVDELMRKFFKNYTTWTQFLGIKSNIRLPYVKQEAQLYKLLYIALYLLMWGEAANLRFMPGCLCYIFHHMVYELHSMLTDAAVSLTTLERIMPSYERGPESFLNKVVSPIYRVIKEVLLSLQFCSTFEVFTFLFKNLKEQWLGKTNFVEIRSFWQIFRSFDRMWSFFILSLQALIIIACHELGSPLQLFDTVIFEDIMSIFITSSVLNLLRAILDIAFTWKARQIMVSSQKKKYAIKLLLAMIWTIVLPVCYANDMRKYKCFSTRSRSWTAQWCFSPYMVAVMIYLSNNGVELVLFLVPAVGKYIEISNDRICTLLSWWTEIKPLIELTKRIMKIGVRSYDVHELFPKVKSNAGAILAVWAPIIVVIFLCHIYFRCILWTQIWYSVFCTVCGGIYGIFNHLGEFTVDSMLRSKFHSLPSAFNTSFFPRPMKHNRKKRRGLFRSRLQKRLENQGNDLAKFVLVWNQIMRSFRSEDLISNRELDLMVIPISSELLSGVIHWPVFLLANKISTAMSIARDFPRKDESLLRKLKKDKYMYWAVKECYELLKYTLEILIVGDLEKRIISALINEIGVSIQRSTLLLDFKMTVLLALLAKIIEFIELLVAGNKEHHEKVVRVLQDILELVIDDMIADCSRIPDLDNFSQQIENEYIDFSRNIDPQLFESSAERNSIHFPLPDSGSLHEEVKRFLMLLTVKDTAMDVPENLEARRCLSFLATSMFMNVPSAPLVRNMMSFGYPCLCVAYVEEREDETGVKPPVYSSKLVKVLSGFDQLPGPPNVGEGKPENQNHAIIFTRGEALQTIDMNQECYLKEAFKMRNLLEEFLQQNRHQPPTIIGLREHIFTGSVSSLGWFMSYQETSFVTIGQRLLANPLRVRFHYGHPDVFDRVFHITRGGVSKASKTINLSEDVYAGLSVLGIYVFLYGQLYLVLSGLEKALLLEARMHNIKSLETALASQSFIQLGLLTGLPMVMEIGLEKGFLTALKNFVLMQLQLAAVFFTFSLGTKIHYYGRTILHGGAKYRPTGRKQGGIGIQQDKSWHSWWDDEQAHLRNSRLSSRLIEILLSLRFFIYQYGLVYHLDISRQSKNFLVYVLSWAVIVAIFLLVKAVNMGRQQFSANYHFAFRIFKAFLFLGVVSVIITLSIICEFSFMDMVVCCLAFLPTGWGLILISQAMQPKLEKARLWGFAQVLAKSYDYGMGIVLFVPSRLVSSSMKHLTGTCKSNPFSLGRRRRFKNFQQIVFLIDRAAGGPSESKKRMILRSICRGKVQRFNSIVALSTSIFPLSLSSSSSSLAAISTSALPNQAGSTTDRLNHKDWLTPKEVLKTVEQIRDPDSLIAYLDHYSKRKDYCPNEAIYTSIISKLAQARRFDEIENVMQRIKAERNCRLSDEFFYHVIKTYGNVAGRITRAMETLYDMPDYNCWPTVKIFNYVLNLLVSAKLFEVVHEVYLSAPKLGIEIDACCLNILIKGLCERGNLEAAFYVLDEFPKQKCRPNVRTFSTLMHGLCVKGKVDEAFELLERMEKERVSADTITFNILISGLRKHGKVEEAIGLLEKMKFKGCHPNDGSYNEILYGLLDEKSFIKAKRLVGMMILERFDPSFVSYKKLISGLCGENRIEDLDWALKKMVKQGFLPKMGMWRQIIKCVFSANGFCIRFPYKEIVEN 1842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30587469 30606558 - BLOR11910 Blo03g00729 58193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00729 1842 Gene3D Tetratricopeptide repeat domain 1465 1623 IPR011990 GO:0005515
Blo03g00729 1842 Gene3D - 36 136 IPR023175 -
Blo03g00729 1842 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 35 112 - -
Blo03g00729 1842 PANTHER CALLOSE SYNTHASE 8-RELATED 1207 1386 - -
Blo03g00729 1842 Pfam PPR repeat 1780 1810 IPR002885 -
Blo03g00729 1842 Pfam PPR repeat family 1708 1754 IPR002885 -
Blo03g00729 1842 PANTHER CALLOSE SYNTHASE 8-RELATED 506 918 - -
Blo03g00729 1842 PANTHER CALLOSE SYNTHASE 8-RELATED 321 505 - -
Blo03g00729 1842 PANTHER CALLOSE SYNTHASE 8-RELATED 920 1095 - -
Blo03g00729 1842 PANTHER CALLOSE SYNTHASE 8-RELATED 115 301 - -
Blo03g00729 1842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1638 1672 IPR002885 -
Blo03g00729 1842 Pfam Vta1 like 50 105 IPR039431 -
Blo03g00729 1842 Pfam PPR repeat 1634 1664 IPR002885 -
Blo03g00729 1842 Pfam PPR repeat 1670 1701 IPR002885 -
Blo03g00729 1842 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 115 301 - -
Blo03g00729 1842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1708 1742 IPR002885 -
Blo03g00729 1842 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 506 918 - -
Blo03g00729 1842 PANTHER CALLOSE SYNTHASE 8-RELATED 35 112 - -
Blo03g00729 1842 PANTHER CALLOSE SYNTHASE 8-RELATED 1095 1208 - -
Blo03g00729 1842 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 920 1095 - -
Blo03g00729 1842 Pfam 1,3-beta-glucan synthase component 920 1097 IPR003440 GO:0000148|GO:0003843|GO:0006075|GO:0016020
Blo03g00729 1842 TIGRFAM PPR: pentatricopeptide repeat domain 1641 1674 IPR002885 -
Blo03g00729 1842 TIGRFAM PPR: pentatricopeptide repeat domain 1676 1708 IPR002885 -
Blo03g00729 1842 TIGRFAM PPR: pentatricopeptide repeat domain 1710 1743 IPR002885 -
Blo03g00729 1842 Gene3D Tetratricopeptide repeat domain 1737 1810 IPR011990 GO:0005515
Blo03g00729 1842 Pfam 1,3-beta-glucan synthase subunit FKS1, domain-1 224 302 IPR026899 -
Blo03g00729 1842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1778 1812 IPR002885 -
Blo03g00729 1842 Gene3D Tetratricopeptide repeat domain 1624 1736 IPR011990 GO:0005515
Blo03g00729 1842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1673 1707 IPR002885 -
Blo03g00729 1842 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 1207 1386 - -
Blo03g00729 1842 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 1095 1208 - -
Blo03g00729 1842 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 321 505 - -
Blo03g00729 1842 SMART FKS1_dom1_2 222 320 IPR026899 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00729 K11000 CALS; callose synthase [EC:2.4.1.-] - pda:103703020 868.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00729 Blo-Chr3:30587469 Blo03g01006 Blo-Chr3:36344348 5.75E-16 dispersed
Blo03g00729 Blo-Chr3:30587469 Blo03g00731 Blo-Chr3:30830285 3.51E-36 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g873 Blo03g00729 . . . . . . . . . . . . . . . . Bhi09g03596 . . . . . . . . . . . . . . . . . Lsi04g01950 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000155 5 14 7 5 6 6 7 7 6 6 6 7 7 6 6 7 7 6 7 7 7 6 5 6 7 7 5 12 7 5 202