Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00764 ATGAAGGTTGCAAATACGTTGATTTTCGGTTTCATCGCAGTTTCTGTCTTCTTCACTTTGATCTCCCCTGCTTTTCGAAATTACAGGCTATGGGAAACTATCACCCACTCTGGTTCTGGCTTAGAAGATGACATTCCTCGAGACAAGCTCCTCGCCGGACTTTTGGCTCCCGATTTCGACGATCAATCTTGCTTGAGCCGATACAGAGCGAGCTTATATCGAAAATCCTCTCCTTACAAACCCTCTTCTCATCTCATCTCGAGACTCCGAAAGTACGAAGATCGCCACCGACTTTGCGGGCCACACTCCGAGATCTTCAACGAGACTCTAAAATTGCTCCAAGGCGACAACAATTTCACTTCTTCCCCGTGCAAGTACGTAATTTTGATGACCCGAGACGGGCTGGGAAACAGAATGCTTGCGATCACGTCGGCGTTTCTCTACGCGTTGATCACGGATCGAGTGGTGCTGATTAACCCAGTGGACGTGTTGGACGATCTTTTCTGCGAGCCGTTCGGGGAGAGGTCGTGGCTGTTGCCGGAGAATTTTCCAATGAGGGATCAATTCAGGTTCTTCAAGAACTCATTGGGCAACATTTTGAGGGATAACATTCATGTCAAACCAAGTGCATTGCCATCATATTTATCTCTCTATCTGTCTCATAATGCCAACAATTATGACAAGCTATTTTACTGTGAGAAACACCAAGCTCTTGTCCAAAACGTTCCATGGCTGATAATGGAGACCAACAACTACATAGTTCCAGGACTTTTCCTCATACCCTCTTTTGAAAAACAGTTTTCTAAATTGTTTCCCAGAAAGGATACTGTTTTTCATCAATTGGGTAGATACCTTTTCCACCCCACAAATGATGTATGGGGACTAATCAGTAGATACAACGATGCCTACCTGTCGAAAGCGAAGGAAAAACTCGGCATCCAAATCCGAGTTTTTAAATCCGAATCCGGGTCGTTCCAACACCATATGGATCAGATCCTGGCCTGCACTCGATTGGGTAAGCTCCTCCCGGAGCTAAACACGACGAGGAGAGCAGCGATTCTCGGGCCGAAGACTCGAAAAACGAAGGCGGTTTTGATAACTTCGTTGAGCTCAATGTACCTGGAGAATGCGAAGAAGCTGTATTGGGAATACCCAACTGAAAATGGCGATGTAATTGGGGTTTACCAGCCTAGCCATGAGGATTTTCAGAAGACTGGAGACAGACTTCACAACAAAAAGGCGTTGACCGAGATTTATCTGCTGAGCCAGAGTGATGTGCTGCTGACGAGCGCTTGGTCTACTTTTGGGTATGTGGCTCAAGGGCTGGCTGGGTTGAAGCCATGGATTCTGTACAAACCGGAGGAGAAGGTTTTCGGAGGTCTCGATGTTGGGTTGAAGTATAAGAATGAGAATGAAACGGAGCATAGTCTGCCGTGTGGGTTGGCGCTGTCGATGGAGCCTTGCTTTCACGCGCCACCTGTTTGTGATTGTGAGAATTTCGGTAGGCTTGATGGCGGCGCTGTTCTTCCTTTTTTGAAACACTGCGAGGATTTGAGCTGGGGTCTTAAGGTTGTCGATAGGAATTGA 1587 46.88 MKVANTLIFGFIAVSVFFTLISPAFRNYRLWETITHSGSGLEDDIPRDKLLAGLLAPDFDDQSCLSRYRASLYRKSSPYKPSSHLISRLRKYEDRHRLCGPHSEIFNETLKLLQGDNNFTSSPCKYVILMTRDGLGNRMLAITSAFLYALITDRVVLINPVDVLDDLFCEPFGERSWLLPENFPMRDQFRFFKNSLGNILRDNIHVKPSALPSYLSLYLSHNANNYDKLFYCEKHQALVQNVPWLIMETNNYIVPGLFLIPSFEKQFSKLFPRKDTVFHQLGRYLFHPTNDVWGLISRYNDAYLSKAKEKLGIQIRVFKSESGSFQHHMDQILACTRLGKLLPELNTTRRAAILGPKTRKTKAVLITSLSSMYLENAKKLYWEYPTENGDVIGVYQPSHEDFQKTGDRLHNKKALTEIYLLSQSDVLLTSAWSTFGYVAQGLAGLKPWILYKPEEKVFGGLDVGLKYKNENETEHSLPCGLALSMEPCFHAPPVCDCENFGRLDGGAVLPFLKHCEDLSWGLKVVDRN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 32067089 32068773 + BLOR11945 Blo03g00764 58228

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00764 528 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 458 527 - -
Blo03g00764 528 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 42 456 - -
Blo03g00764 528 PANTHER FUCOSYLTRANSFERASE 2-RELATED 458 527 IPR004938 GO:0008107|GO:0016020|GO:0042546
Blo03g00764 528 PANTHER FUCOSYLTRANSFERASE 2-RELATED 42 456 IPR004938 GO:0008107|GO:0016020|GO:0042546
Blo03g00764 528 Pfam Xyloglucan fucosyltransferase 46 497 IPR004938 GO:0008107|GO:0016020|GO:0042546
Blo03g00764 528 Gene3D - 295 455 - -
Blo03g00764 528 Gene3D - 121 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00764 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101222105 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00764 Blo-Chr3:32067089 Blo11g00785 Blo-Chr11:11756658 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00785 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 8.5e-159 557.4
Blo11g00785 . 84 567 Xyloglucan Fucosyltransferase1 AT1G14100 55.8 7.4e-160 560.8
Blo11g00785 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.5 4.9e-142 501.5
Blo02g00831 BCT 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.3 9.5e-192 666.8
Blo15g00748 BCT 1 538 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 4.9e-180 627.9
Blo17g00157 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 7.8e-165 577.0
Blo11g00785 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 1.4e-180 629.8
Blo11g00785 . 2 564 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 1.7e-202 702.6
Blo03g00764 . 44 525 Xyloglucan Fucosyltransferase1 AT2G03220 52.9 4.9e-149 525.0
Blo11g00785 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15350 52.4 7.2e-147 517.7
Blo11g00785 . 94 566 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 5.9e-144 508.1
Blo11g00785 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15390 54.1 2.9e-151 532.3
Blo02g00831 BCT 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 9.6e-189 656.8
Blo15g00748 BCT 1 538 Xyloglucan Fucosyltransferase1 AT3G19280 59.2 7.6e-178 620.5
Blo11g00785 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 1.4e-180 629.8
Blo11g00785 . 2 564 Xyloglucan Fucosyltransferase1 AT2G03220 61.1 1.7e-202 702.6
Blo03g00764 . 44 525 Xyloglucan Fucosyltransferase1 AT2G03220 52.9 4.9e-149 525.0
Blo11g00785 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 1.4e-180 629.8
Blo11g00785 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15390 54.1 2.9e-151 532.3
Blo11g00785 . 94 566 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 5.9e-144 508.1
Blo11g00785 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 8.5e-159 557.4
Blo11g00785 . 84 567 Xyloglucan Fucosyltransferase1 AT1G14100 55.8 7.4e-160 560.8
Blo11g00785 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.5 4.9e-142 501.5
Blo11g00785 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15350 52.4 7.2e-147 517.7
Blo02g00831 BCT 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 63.7 9.6e-189 656.8
Blo15g00748 BCT 1 538 Xyloglucan Fucosyltransferase1 AT3G19280 59.2 7.6e-178 620.5
Blo02g00831 BCT 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.3 9.5e-192 666.8
Blo15g00748 BCT 1 538 Xyloglucan Fucosyltransferase1 AT1G49710 58.8 4.9e-180 627.9
Blo17g00157 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 7.8e-165 577.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007613 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 2 2 2 1 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00764 Blo_Chr03 FPKM 7.129108 9.83928 8.911192 10.884793 4.01238 2.538221 5.606641 22.59623 21.632378 19.589224