Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00803 ATGTCTCCTTCTTCCTCGTCTTTGGCGTCTGTTTGCCATGAACCATCGCTTACAATTCAGCAACGCCTTCAAATCTTCGCCGAATACAGACCAGAATGGTGGGTTTACTGCATCTTCTGGCAAGCTTCAAACCACAGCAATGGCAACATCGTCTTATCTTGGGCGGACGGCCATTTTCGTGGGCAGCGAACTTGTTCGGAAATGGACGTGGACAGGCTGATGCATGGCAATCCCACGGAGTGGTTTTACTCTGCCTCCTTGTCCAGATCGTTTCTGGGTTCCGGCGACCTGGTCAGTCAGGCGTTCGTTTACGGCTCTTTCTTCTGGCTGACGAGTGAAAACCAGGACCAGTTCTCTGAATATGAAAGATTTAGAGAGGCGCGGTTGTGTGGAATTCAGACTCTTGTTTGTATTTCTACTTCTGTTGGAGTTTTGGAAATGGGTTCTGCAGATCTGATAGATGAAGATTGGGAGATAATCCAGCTCGGAAAATCTCTCTTTGGATCTGACATTTCGAATTTCATAAGCTCAGTTGATGTAGGGAATTTCGCTCCGGCCTACGTTTCCAATAATCAAACCAAGAGACGAGGGAGAAAGCTTGAGACAGAAACGGAGGCAGCAGTTAACCACGTCCAAGCTGAGAGACAGAGAAGAGAGAGACTGAACCGGAGATTTTACGCTCTCAGATCAGCCGTTCCAAATGTCTCAAAAATGGACAAAGCGTCTCTCCTCGCCGATGCGGTGGTTTACATAAACAAGCTAAAAGCAGAGGTCGAAGAAATGGAACTGAAACTCCGATCACACTCCACGATAAACACAAAAATGTCACTCCCTGCGGCTTCCACTTCATCCAAATCCATTTTTCGGGACGGCGAGAAAACCTCTAAAAAAGTCTTCGACGACTTTTACAAAATTCGACCACCGTCCATGACCAACTGCTCGGAAGCCATTGATGTGGACGTGAAGATTGTGGGAACAGAAGCCTTGATTCGAGCTCGCGGGCGAGATCAGGGCCATCCATCGGCGAGACTGATGAACGTTCTCAAAGAACTCAATCTGCAAATCCACCATGCGAGCATCTCAAAGGTGAAGGAGCTGATTCTTCAAGACGTCGTGGTTAGACTTCCAGACGGACAGAACAACGAGAAAGCCGTTAAAATTGCTATTCATCAAAAACTGAACAACTAA 1188 47.22 MSPSSSSLASVCHEPSLTIQQRLQIFAEYRPEWWVYCIFWQASNHSNGNIVLSWADGHFRGQRTCSEMDVDRLMHGNPTEWFYSASLSRSFLGSGDLVSQAFVYGSFFWLTSENQDQFSEYERFREARLCGIQTLVCISTSVGVLEMGSADLIDEDWEIIQLGKSLFGSDISNFISSVDVGNFAPAYVSNNQTKRRGRKLETETEAAVNHVQAERQRRERLNRRFYALRSAVPNVSKMDKASLLADAVVYINKLKAEVEEMELKLRSHSTINTKMSLPAASTSSKSIFRDGEKTSKKVFDDFYKIRPPSMTNCSEAIDVDVKIVGTEALIRARGRDQGHPSARLMNVLKELNLQIHHASISKVKELILQDVVVRLPDGQNNEKAVKIAIHQKLNN 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33254700 33256019 - BLOR11984 Blo03g00803 58267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00803 395 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 167 IPR025610 -
Blo03g00803 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Blo03g00803 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 269 IPR036638 GO:0046983
Blo03g00803 395 SMART finulus 211 260 IPR011598 GO:0046983
Blo03g00803 395 PANTHER MYC 9 393 IPR045084 GO:0003700|GO:0006355
Blo03g00803 395 CDD ACT_UUR-ACR-like 329 393 - -
Blo03g00803 395 Gene3D - 196 269 IPR036638 GO:0046983
Blo03g00803 395 Coils Coil 244 271 - -
Blo03g00803 395 Pfam Helix-loop-helix DNA-binding domain 209 254 IPR011598 GO:0046983
Blo03g00803 395 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 9 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00803 - - K13422 pop:7477819 337.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00251 Blo-Chr1:3210230 Blo03g00803 Blo-Chr3:33254700 3.94E-71 dispersed
Blo03g00803 Blo-Chr3:33254700 Blo03g00861 Blo-Chr3:34437532 3.74E-19 dispersed
Blo19g00139 Blo-Chr19:4398262 Blo03g00803 Blo-Chr3:33254700 2.36E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g242 . . . . . Bpe07g00211 Bma07g01022 . Cmo06g00587 Cmo16g01278 . . . . . Cpe14g01018 . . . . . . . . Cla10g00083 Cam10g0080 Cec10g0083 Cco10g0087 Clacu10g0081 Cmu10g0928 Cre10g0343 . . . . Lsi07g01109 . . Cme06g02389 Blo03g00803 . . . Bpe08g00900 . . . . . . Cma06g00583 Cma16g01232 Car06g00517 Car16g01160 Cpe08g00916 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003373 2 1 2 2 2 2 0 2 3 1 1 2 1 1 1 0 2 4 1 2 1 4 0 2 1 1 0 5 0 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12130 PF14215 bHLH-MYC_N 2.80E-33 CL0161 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00803 Blo_Chr03 FPKM 24.461714 28.072432 17.227345 16.235741 76.134918 71.908264 79.001953 19.062923 18.534416 17.82383