Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00818 ATGAAGTGCTTATTTAATTTCAAGGGCAAATCTAAGCAGAAACGCGGATCCGAATCCGCACCGGAAATTAGCCGGGAAAACGAATCCGATGGTCCGGGACTAAAACGCGCGTCGAAATCATCAAATTCCTTACCTTCTCCAAAAACGATACCTGAATTGTACAAAGAGAAGGAGAATAATCTGAGGGTCTTCTCTTTCCAAGAGCTGAAAGATGCGACTAATGGGTTTAGCAGGATGCTTAAGATTGGGGAAGGAGGTTTTGGCAATGTGTACAAGGGAACAATTAGAGATGCTAACGGAAAAGGTGATCCAATTGTAGTTGCCATTAAAAAGCTGAACCAGCATAGCCTGCAGGGCCATAAACAATGGCTTGCAGAAGTTCAGTTTCTCTGCGTTGTTAGTCACCCAAACTTGGTAAAGCTTCTGGGCTACTGTTCGGATGACGGGGAAAGAGGGATTCAGCGGCTCTTAGTTTATGAGTTCATGCCTAACAGAGGCCTGGATGATCATCTCTTCAGCAGGGCTTCGCCTACTATGCCTTGGAAAACAAGACTACAGATAATTCTGGGTGCAGCTCAAGGATTGGCTTATTTACATGGTGGATTAGAAGTCCAGGTGATATATCGTGATTTTAAATCATCCAATGTGCTCTTGGATGCGGATTTCAAACCGAAGCTCTCGGACTTTGGCCTTGCTCGAGAAGGTCCAAAAGGCGATCAGACTCACGTGTCAACTGCCGCGGTTGGAACGCTAGGTTATGCAGCTCCAGAATATGTAGAAACCGGGCGTCTCAAAAGCCATAGTGACGTGTGGAGTTTTGGAGTAGTGCTTTACGAGATTCTAACGGGAAGGAGAGCATTGGACATAAATCGCCCGGCAGGGGAGCAGAAGCTAATAGAATGGGCCAAACAATTCCCGGTTGATAGTAAAAGGTTCAATGTGATAATGGACCCTCGGCTAAGAGGCCAATATTCCTTAGCCTCGACCAGAATGGTAGCCAAACTAGCCGACCGGTGCCTGAACAAGAAGACAGCAGAGAGGCCGACCATGTCTGAGGTTGTAGAGAGCTTGAGTCAAGCTCTGCAAGAAACTGAGAGAAGGGCATTATGA 1110 46.58 MKCLFNFKGKSKQKRGSESAPEISRENESDGPGLKRASKSSNSLPSPKTIPELYKEKENNLRVFSFQELKDATNGFSRMLKIGEGGFGNVYKGTIRDANGKGDPIVVAIKKLNQHSLQGHKQWLAEVQFLCVVSHPNLVKLLGYCSDDGERGIQRLLVYEFMPNRGLDDHLFSRASPTMPWKTRLQIILGAAQGLAYLHGGLEVQVIYRDFKSSNVLLDADFKPKLSDFGLAREGPKGDQTHVSTAAVGTLGYAAPEYVETGRLKSHSDVWSFGVVLYEILTGRRALDINRPAGEQKLIEWAKQFPVDSKRFNVIMDPRLRGQYSLASTRMVAKLADRCLNKKTAERPTMSEVVESLSQALQETERRAL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33622228 33623881 + BLOR11999 Blo03g00818 58282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00818 369 PANTHER OS01G0588500 PROTEIN-RELATED 24 364 - -
Blo03g00818 369 Gene3D Phosphorylase Kinase; domain 1 55 161 - -
Blo03g00818 369 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 24 364 - -
Blo03g00818 369 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo03g00818 369 CDD STKc_IRAK 82 359 - -
Blo03g00818 369 Gene3D Transferase(Phosphotransferase) domain 1 162 368 - -
Blo03g00818 369 SUPERFAMILY Protein kinase-like (PK-like) 58 357 IPR011009 -
Blo03g00818 369 MobiDBLite consensus disorder prediction 1 50 - -
Blo03g00818 369 ProSitePatterns Protein kinases ATP-binding region signature. 82 111 IPR017441 GO:0005524
Blo03g00818 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Blo03g00818 369 MobiDBLite consensus disorder prediction 34 48 - -
Blo03g00818 369 MobiDBLite consensus disorder prediction 11 33 - -
Blo03g00818 369 Pfam Protein tyrosine and serine/threonine kinase 81 357 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00818 - - K00924 qsu:112032229 554.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00247 Blo-Chr2:2365632 Blo03g00818 Blo-Chr3:33622228 1.89E-153 dispersed
Blo03g00818 Blo-Chr3:33622228 Blo14g00116 Blo-Chr14:830718 3.25E-123 dispersed
Blo03g00818 Blo-Chr3:33622228 Blo16g00655 Blo-Chr16:25982351 1.57E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0867 Cone9ag0873 . . . . Blo03g00818 . . Bda09g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00681 Chy07g01132 .
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001810 3 2 1 0 2 0 4 0 0 2 2 0 4 2 0 4 0 0 4 0 2 0 0 0 0 2 0 0 0 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84191 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00818 Blo_Chr03 FPKM 17.413879 19.603148 13.709831 13.351346 10.598889 11.532657 10.741117 19.190023 17.516922 19.547474