Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00821 ATGGCAGGAAAGAAGTCCGACGGGCGTTTGGAGCCTGTGGAAGAGAAATTGGAAGTAGTCAGGGCAGAAATGGAGTCTTTGAGAGGAGGCCTTTCAAAAATTCCGTTCCTAGAAAATAGTTTGCAAACTATTTTGGAAAAATTGGAAGGACTTACCCGAATACAGGGCGAAAACCGCGAGGAGCAGCATTTCGGCGTTGATCGGCAGCGAACGTTGCTGGACGAAGACGATGCTGTCCGTTCAGAGACTGGGTTTGGTGGCGTCGGCGAAGAAGTTGAGTTGATTGGTGATGCTGACCATGTCTTTGCTGTCTGTGATGCTGCACGTTCAATTACCAAGGTAGTGGAGGACAGTAGTGCACTAGTTGTACGCTGTGAATCTGAGGATTCAAGTAAAATTTGGCAAAGCCGTTTGCAAGGGGCTATTTATCGTGCATCGGTATCAGCACCCATTACTGGTCTGTCTGAAAGTTCATCAGATGAAGGCTCGGAAACAGATCCTAGCGACATCCATGAATTGCCAAATTTGTCTATCGAGAAAGTTTTTATAATTGGAATTCTTGATGAACTAAAGGTTTGCTTCAGTGGTGGTGATCAGAGTGACCAGAGCTTTACGAAGGTTCTTCTAACTGAAGAGAGACAACTACTGGAATTTCGGGCAATAGGTGGTCAGGTTGAAATTTCAATTAGATCAAATGACATGTTTATTGATGCTATTGTGAAATCAATGGAGATTGAAGATTTATTTTGTTCCATGACTGCTGATGGGTCTTTTTATCTGGCAAGATCAGTTGTTCCGAGTTTGAATGGACATCTATTTTCTGGTGATGCAGTAAATCAAATTTTGGACGGTAATGATCTGATTCCAAGTGAAGGAGATGATAATTTTTACGAGGCACCTGAGACCTTGGACTCTGTTGAATATCAAGTGCAGCAACCAGGAAACAGAGTTGATTATGTTAATTCTCTGAATTTGCTTGAAACTTTATTATCAAAGCCCCCTAGTTTTGGAGATTTAGCTGGTAAACTCCCTCATGATGACTTGAAAAGTAGAAACAGGGGTAATGAGTGTAGTGATACAATCAATACTTTTGTAAAGGCTCAAATAGTAATCTATGATCAGAATTCTCCTCAATACAATGACATAGATAAGCAGATTACTGTTACGCTGTCTACATTGTCATTTTTTTGTCGAAGACCTACCATTCTTGCCATTATGGATTTTGCAAATTCAATTAACATTGACGACAAGAGTAGTAGACTTAATTCGATGTCAGACATCATAGGACCTAGTGTCATCAAGGAAGATGTCGACAATCAACAAGAAATGGCCAATGAGGAAGTTGTGGTAAAAGGTCTGCTTGGAAAGGGTAAATCAAGAGTCATATTCAAATTAGCATTAAATATGTCTCGTGCAGAGGTTTTCCTGATGAAGGAAAATGAGATGAAACTTGCAACGTTATCTCAAGACAACTTGCATGCTGATATTAAGGTGTTTCCTTCTTCCTTCAGTATAGAGGCTGCCCTTGGAAATCTTAGAATAAGTGACGACAGTCTTCCTAGCAGCCATATGTATTATTGGGCATGCGAAATGAGAAATCCTGGTGGTAGTTCATTTGTCGAGTTGCTTTTTACTTCATTCTCTTCTGATGATGAAGATTACAACGGCTATGAGTACAGTCTTTTGGGGAAGCTTTCAGAAATACGTGTCATTTATCTGAATAGATTTATCCAAGAAGTCGCTAGTTACTTTATGGGCCTTGTCCCTAATAGTGCTAAGGGTGTAGTCAAGCTAAAGGATCAAGTAACAAATTCAGAGAAGTGGTTTACTACTTCTGAAATTGAAGGGTCTCCTGCTTTGAAGTTGGATGTTTCTCTTACAAAACCGATAATACTAATGCCTCGTAGAACAGAGAGCCTCGACTTCTTAAAGCTTGATATTGTCCATATAACTGTCCAAAACACCTTTCAGTGGATTTCTGGCAGTAAAACAGACACAAATGCTGTGCATTTGGAAACTTTAAGAGTTCTGGTTGATGATATCAATTTAAATGTAGGCATTGGTAACGAATTAAGTGAGAGCATTATTCAAGATGTTAAGGGAGTTTCTATTGTCATTCAAAGGTCACTTCGAGATTTGTTTCATCAAGTACCTAGCATGGAAGTTGCAGTTCGGATAGAAGAATTGAAAGCAGGTCTTGCAAGTCAGGAATACCAGATTATCTCTGAATGTGCAGTGTCCAATTTTTCTGAGACTCCGCAAATCACGCCTTCATTAAACAACTATTCCATAAAACCTTCTACTGGAATATTAGATTCTAACACTCCGGACCCAGTTGATGTTGAATCTGAAACTGGAAGTATGGACAAGGAATCCTGGATTGCAATGAAAGTCTCTGTCGTTGTTAATCTTATCGAATTATGTTTGCACACAGGAGTAGCAAGAGATGCATCTCTAGCCACAGTGCAGGTTGGTGGCGAAGGATGGGGAGCATTGTTGCAACTGAAGATAAAGAAGGAAGAAGGTTCAGAAAAGTTAGTCATGGTAGTGGGAAATGTTCTTATAGCTAGACGTGGGCTGGGGGATATATTAGAGAAGGCAATGGGAGGAAATATACTATCAGAAACCTTCCTGCTAGAGGGAGTGGAGTTTGTAACAGGGAGCATACCACACATCAAGTCTTTAGTTAGTGATGCATGGCTCCTTTACAAATCAACTGGAGTTGGGGATGGATATCTGTCAGCATCCCTTAAAGGTTTCACTGTCATTGATGATCGTGAGGGAACTGAGCAAGAATTCAGGCTGGCAATTGGAATGCCAGAAAATTTTCGTTCTAGCCCATTGTGTTTACAGGCTTGTGAAAAAAATCAGCATACGTCCCTTACAAGTCCTAAAGATAGTAATGTTCAGGCAATTCCTACAATGCTTATACTTGATGCAAAATTTAGTGAGTTTTCAACATCAGTTTTTTTAGCGGTGCAAAGGCCACAACTGCTTGTCACACTTGATTTTCTGCTAGCTGTTGTTGAGTTCTTTGTTCCAAGTGTCCGAAATATCCTGTCTGATGAAGAAGATAAGAATTCTATACATGCAGTTGATGCGATCATCCTGGATCAGGCAACTTACAGGCAACCAACTGGTGAAATGTCTCTGTCTCCTAAGAGACCATTAGTGGTTGATGATGAAAGGTATGACCATTTCACCTATGAAGGTAATGGGGGCATATTATATTTAAAAGACAGAGAAGGACTCGATTTGTCAGCACCTAGCAATGAGGATATAATATATGTAGGAAATGGGAAATCATTGCGATTCAAAAATGTTGTCATTAAGAATGGGAAGTACCTGGATTCGTGTATATTTATGGGAACCAATAGTAGATATTATGCATCAATGGAGGATCAAGTTTACTTGGATGGTCAAGATGATAACTGTGAACCAAATATTTCAAGAGAGAATGTGGATGACAGTCCATCTCCAAACACCGTGACAGCCGGATCAGGAGAATTTATAATTGAGCTACAGGTTCATAATTTTCTTGGATAA 3546 39.96 MAGKKSDGRLEPVEEKLEVVRAEMESLRGGLSKIPFLENSLQTILEKLEGLTRIQGENREEQHFGVDRQRTLLDEDDAVRSETGFGGVGEEVELIGDADHVFAVCDAARSITKVVEDSSALVVRCESEDSSKIWQSRLQGAIYRASVSAPITGLSESSSDEGSETDPSDIHELPNLSIEKVFIIGILDELKVCFSGGDQSDQSFTKVLLTEERQLLEFRAIGGQVEISIRSNDMFIDAIVKSMEIEDLFCSMTADGSFYLARSVVPSLNGHLFSGDAVNQILDGNDLIPSEGDDNFYEAPETLDSVEYQVQQPGNRVDYVNSLNLLETLLSKPPSFGDLAGKLPHDDLKSRNRGNECSDTINTFVKAQIVIYDQNSPQYNDIDKQITVTLSTLSFFCRRPTILAIMDFANSINIDDKSSRLNSMSDIIGPSVIKEDVDNQQEMANEEVVVKGLLGKGKSRVIFKLALNMSRAEVFLMKENEMKLATLSQDNLHADIKVFPSSFSIEAALGNLRISDDSLPSSHMYYWACEMRNPGGSSFVELLFTSFSSDDEDYNGYEYSLLGKLSEIRVIYLNRFIQEVASYFMGLVPNSAKGVVKLKDQVTNSEKWFTTSEIEGSPALKLDVSLTKPIILMPRRTESLDFLKLDIVHITVQNTFQWISGSKTDTNAVHLETLRVLVDDINLNVGIGNELSESIIQDVKGVSIVIQRSLRDLFHQVPSMEVAVRIEELKAGLASQEYQIISECAVSNFSETPQITPSLNNYSIKPSTGILDSNTPDPVDVESETGSMDKESWIAMKVSVVVNLIELCLHTGVARDASLATVQVGGEGWGALLQLKIKKEEGSEKLVMVVGNVLIARRGLGDILEKAMGGNILSETFLLEGVEFVTGSIPHIKSLVSDAWLLYKSTGVGDGYLSASLKGFTVIDDREGTEQEFRLAIGMPENFRSSPLCLQACEKNQHTSLTSPKDSNVQAIPTMLILDAKFSEFSTSVFLAVQRPQLLVTLDFLLAVVEFFVPSVRNILSDEEDKNSIHAVDAIILDQATYRQPTGEMSLSPKRPLVVDDERYDHFTYEGNGGILYLKDREGLDLSAPSNEDIIYVGNGKSLRFKNVVIKNGKYLDSCIFMGTNSRYYASMEDQVYLDGQDDNCEPNISRENVDDSPSPNTVTAGSGEFIIELQVHNFLG 1181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33691231 33701785 - BLOR12002 Blo03g00821 58285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00821 1181 PANTHER - 896 1176 - -
Blo03g00821 1181 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 896 1176 - -
Blo03g00821 1181 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 93 826 - -
Blo03g00821 1181 PANTHER - 93 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00821 K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C - cit:102618522 1066.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00821 Blo-Chr3:33691231 Blo12g00382 Blo-Chr12:20343403 1.12E-23 dispersed
Blo03g00821 Blo-Chr3:33691231 Blo03g00170 Blo-Chr3:4285098 3.31E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g579 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00040 . Blo03g00821 . Bda07g00127 . . Bpe11g00358 . . . . Cmo19g00390 . . . . . . . . . . . . . Cla09g01192 Cam09g1259 Cec09g1274 Cco09g1310 . . Cre09g1223 . Csa03g04662 . Cme04g00049
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006969 1 2 4 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00821 Blo_Chr03 FPKM 120.578423 133.047852 114.294327 108.07473 48.306763 45.305168 48.908764 62.504368 61.832157 62.793888