Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00822 ATGTTGGAGGATCAAGTCGCTTACCTGTTGCAGAGGTACCTGGGCAATTACGTTCAGGGCCTCAATAAAGAAGCCCTCAAGATCAGTGTCTGGCAAGGTGATGTGGAGCTAACGAATATGCAATTGAAGCCTGAGGCACTCAATGCATTAAAGTTACCAGTGAAAGTTAAGGCTGGATTTCTTGGATCTGTCAAACTTAAGAGAGAGGAGAGAGAGAGAGGTCACTTATATTTAGTGGGTGACACGTGTAAAATTATACTTGGCTGGACCGTAACATGCGGCTCCTCAATTTTAACAATTATTTTTATGAAGGTAGCTTTTTGCAGAATTCATTTTTTCAAATTCTCTAGGGGATTTGCTTGGGATGTGCTGATAGTTCCATGGAGCAGACTTGGTCAAGATCCTGTTTTGGTTTACTTGGATCGCATTTTCTTATTGGCTGAGCCAGCAACTGAAGTTGAGAGTCATTCTGAGGATGCTGTCCAGGAAGCCAAAAAAAGCAGAGTGCGGGAAATGGAAATCAAACTGGTGGAGAAACGGATAAAGATGGAAATGAACAAATCATGGCTGGGGTCCTTTATAAGCACAATAATTGGAAATTTAAAGCTCTCAATATCAAATGTTCACATCAGATACGAGGATATTGAGAGCAATCCTGGTCATCCATTTGCAGCTGGTGTGACTCTAGAAAAACTCTCAGCAGTGACCGTTGATGATAGTGGGAAGGAAACATTTGTCTCTGGAGGTTCTCTAGATCGTATTCAGAAGTTTGTTGAGCTTGATCGGCTAGCATTTTATCTTGATTCTGATATATCTCCATGGTATGTTAGCAGGCCTTGGGCGGATTTGCAGCCTAGAGAATGGGTTAATGTGTTCCGCTTTGGCACTAAGAATGGCAGACCTGCTGATGGCCATGTACAAAGGCATAGTTATATTCTACAACCAGTGAGTGGGAATGCAAAGTATGTGAAGCTGCGGCCAAATGAAGCCATTAATGTCAGTCAACCTCTACAGAAGGCATCTGTGAATCTTGATGATGTGACACTATGTTTATCAAAGAATGGATACATGGATATGTTAAAATTAGCTGACAATTTTGCTGCTTTCAATCAACGCTTGAAATATGCTCATTATCGTCCACCTTTTTCGGTGAAATCTCATCCTAAATCTTGGTGGAAATACGCTTATAAGGTGGTATGTGACCAGATGCAAAAGGCAAGTGGAAAAATGTCATGGAAAGAAGTTCTCAAGTTTGCGAGCTTGCGGAAGAGATACATTTCTCTGTATGCTTCACTGCTCAAATCTGATCTCACTCGGACAGTTGTTGATGATGACAAAGACATTGAAGATCTTGATCGTCAGCTTGATATTGAACTTATTCTTCAGTGGAGGATGCTTGCTCATAAATTCGTGGAGCAGTCAATAGAATCAGACCAGCACTTGCAGAAGCAAAAAACGAAAAAATCCTGGTGGTCATTTGGATGGAATAATCAATCAAATAAAGAAGAAGGGGACCAATTTTTCAGTGAAGAAGACTGGGAGCGGCTGAATAGAATTATTGGATACAAGGAAGAGGACGATGCGCAGACTATCATAAAGACTGATAAAGTGGATGCTCTTCAAACTTCCTTGGAGATTCACATGAACCATAATGCTACAAAGCTTATTGATGATGCCCAGGATTTGGCGGAATTGTCGTGTGAACACCTTGATTGCTCGATAAAATTTTATCCAGAAACAAAAGTGTTTGACCTTATGTTGGGCTCATATCGGTTATCTTCTCCAAATGGTCTTCTTGCTGTGAGTGCGCCTTCACATCATTCATTAGTTGGTGTCTTCCGCTACAAACCTTATGATGCCAAAGTGGACTGGAGCATGACTATCAAAGCGTCTCCATGTTATATGACTTATCTGAAGGATTCTATTGATCAAATTATCAAATTCTTTGAGAGCAACACTGCTGTTAGTCAGGCTGTTGCGTTGGAAACTGCAGCTGCTGTGCAGATGACAATTGATGAAGTCAAACGCACTGCCCAGCAACAAGTTAATAGAGCCTTGAAAGAACAGTCCAGATTTTTCTTGGATTTGGACATTGCCGCTCCCAAGATTACAATTCCTACTGACTTTTGCCCTGACAACACCAATTCAACGAAACTTCTGCTTGACTTGGGAAATTTACTAATTCGTACTCAGGATGATGTTGAGCATAAATTAACCCCTGAGCCGGACAAGTATATGCATTTTGATTTAATTTTAAGTGATGTGTCTGCTTTTCTGGTCGATGGTGACTATAATTGGAGCCAAAGTCATCTAAGTGAGGCTTCTGGTTCAGCCAGCTCAGTGGGTGTCAATTTCTTGCCGGTTGTTGATAATTGTGGGTTAATTATAAAACTTCAACAGATTCGACTACAGAGCCCATCTTATCCTTCAACGAAGCTTGCAGTGCGATTGCCATCACTGGGGTTTCACTTTTCTCCAGCAAGGTATCATCGACTGCTTAAAATTGCAAAAATCTTTCAGGTAGAGGATAGTACAAATTCAGAGGTTCGTCGACCTTGGGATCCATCTGATTTCGAGGGATGGCTATCTTTACTTATTCGGAAGGGTGTTGGAAATAGAGAAGCTGTGTGGCAACGACGGTATTTCTGTTTAGCTGGGCCGTTTCTTTATATACTTGAAAGTCCTAGTTCTAATTCATACAAGCAGTATATAAGGTCAGAGCTGATTATCTGA 2733 41.16 MLEDQVAYLLQRYLGNYVQGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKLKREERERGHLYLVGDTCKIILGWTVTCGSSILTIIFMKVAFCRIHFFKFSRGFAWDVLIVPWSRLGQDPVLVYLDRIFLLAEPATEVESHSEDAVQEAKKSRVREMEIKLVEKRIKMEMNKSWLGSFISTIIGNLKLSISNVHIRYEDIESNPGHPFAAGVTLEKLSAVTVDDSGKETFVSGGSLDRIQKFVELDRLAFYLDSDISPWYVSRPWADLQPREWVNVFRFGTKNGRPADGHVQRHSYILQPVSGNAKYVKLRPNEAINVSQPLQKASVNLDDVTLCLSKNGYMDMLKLADNFAAFNQRLKYAHYRPPFSVKSHPKSWWKYAYKVVCDQMQKASGKMSWKEVLKFASLRKRYISLYASLLKSDLTRTVVDDDKDIEDLDRQLDIELILQWRMLAHKFVEQSIESDQHLQKQKTKKSWWSFGWNNQSNKEEGDQFFSEEDWERLNRIIGYKEEDDAQTIIKTDKVDALQTSLEIHMNHNATKLIDDAQDLAELSCEHLDCSIKFYPETKVFDLMLGSYRLSSPNGLLAVSAPSHHSLVGVFRYKPYDAKVDWSMTIKASPCYMTYLKDSIDQIIKFFESNTAVSQAVALETAAAVQMTIDEVKRTAQQQVNRALKEQSRFFLDLDIAAPKITIPTDFCPDNTNSTKLLLDLGNLLIRTQDDVEHKLTPEPDKYMHFDLILSDVSAFLVDGDYNWSQSHLSEASGSASSVGVNFLPVVDNCGLIIKLQQIRLQSPSYPSTKLAVRLPSLGFHFSPARYHRLLKIAKIFQVEDSTNSEVRRPWDPSDFEGWLSLLIRKGVGNREAVWQRRYFCLAGPFLYILESPSSNSYKQYIRSELII 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33713497 33725408 - BLOR12003 Blo03g00822 58286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00822 910 PANTHER - 124 889 - -
Blo03g00822 910 Pfam Repeating coiled region of VPS13 614 836 IPR031642 -
Blo03g00822 910 Pfam N-terminal region of Chorein or VPS13 2 166 IPR026854 -
Blo03g00822 910 Pfam Vacuolar sorting-associated protein 13, N-terminal 189 430 IPR031646 -
Blo03g00822 910 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 124 889 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00822 K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C - cit:102618522 1197.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00822 Blo-Chr3:33713497 Blo12g00381 Blo-Chr12:20312352 1.22E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g580 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00822 . . . . . . . . . Cmo19g00389 . . . . . . . . . . . . . Cla09g01190 Cam09g1256 Cec09g1271 . . . Cre09g1218 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006969 1 2 4 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00822 Blo_Chr03 FPKM 18.329588 19.72448 102.552856 100.19516 13.302086 10.549067 11.336185 136.812256 136.654846 125.025291