Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00824 ATGCTCGTCGCGGCGCGACGAACAGTGGGCGCGAAACGTGCGAGGCTAGGGCACGGGTTGTTCGGACCGAACGAAATCACGAATTGGAGCTCCGGCGTTGCTGCGAAATGTCGATCGAGGGTTGATGATGCTGGATTAGGCGGATTGTGCTGGATGGGGGGAAGTTATTGCGAGAGGATTGTCAGACCATTTTACGCAAATTTGGAACTGTCCACCCATCCATTAGAGCTGCGAACGTATATCTTTGGACGGGAGTTGAGGTTGACTCCCAATGAGCTGAATATAATGCTTGGATGTGATTTGGAGGGGCCAAGCGATCAATATTCACATGTGTCATGGGATCCACTGTTTATCAGCCGAGGAGAAGGGCTAGCGGTGCTTAGATTTTTGCACCGGGATCCCGAGATTGTCGAGTGTAAGAAGCCAAAGGGCAGGGAGTTGAATGTCATCGCCCGAGTGATCCACCTCATGATGACGTACACAATTTTGCCTCGAGATGGATATCGAGACCATGTTAGCTGCATGGATCTTTATTTGCTGGAGAAGGTGTTCACCAGGAAAAAAATGGACATTGGATATGTCATCCTGACCGAGAGTCGAAGAGACGGCCATAGACGTGTACAACAAATCAAAAGTGGACCGAATGGGGTCAGCAAAGTTGGAGGGAAATGGATACGCAAGGCCCCGAAGCAGCCACCTTTAGTGTCCCAGCTGCCAGCACCTCCACCCCCCTCAGTGGCTCAGCCTTCAGCCCCCTCGGCAGAACAGACTCTAGCATCGCCTTTGCAGCACATGGAAGAGGATGCTTCGCAGCTGATGCATTCTCCCCCTTCTCAAACATCGTATTTTACTTTGATGCCTGAGGAGACATCCAGCTGGATGAGCAGGATGGAGGAGCTCCATCATATGGCGCTTACTAGAATACGAATGATGGAGGAGCACTTTCCAATGGCGCATATCCAAATAAAGAAAGTGGAGGAGCGAGCAGAAGAGAGGCATCACACCATTGCCATAAGATGCCAACTTGCTCCTCCAGCTGTGCTTGCCGAGTCTCGAGATTTGATGGACGTCTTCAAGAAGTATGTTGCGCTCAATACTCGGAAGAATGTGGAGACGTGCGTAATTCTTGGGGGAAAGCTGCTCGACGGTGATTACATAATCACTAATATCATCTTCCTGGATCAAGTCGGGACACCAAACACGGTGAGAAGCCTTCTTTGTATCTTAGTACTCATCCAAACTTATATGCAGTGCTATGCGGTCAATGAGAAAGACATATTTGTGTTTCAACAGGAACGAGGTCTACTCACATTATGGTGGATTCATACATACTCAAAGCAAAATTGTTTTATGTCCTCCATTGACCTCCACACTCAATATGCTTACCAGCAATTGATGCCGCAAGCAATCTCCATCATTGTAGCTCCCATTGACAAAGAGCAGGTGGACAAAGTGGGAGTACATTGCCATGTATGTCTCTCAGTGATAGCACACATGTACAAATTCCTCAAGAGATCTCCTCGTGAAGTGAATGCACGGGACTGCATGGACACACGGGATGCCAATCAACTCCCACCGGTAACAGGTGAGAAGGGAAGTGATGATTATGATAGAGAAAATTGGATGCACGAAACATTGGCACCATTAAGTGATCGCTCTCTGATGATTTCTTCGTCCTATTATGATACATCTACTTTGTCCTTCCCAAGAAATTATTTAGTTTCTTGTGAGGACCTAAAGGGTGTTGGTTCTTTTGATACCACCTGCCTACTAAAATCACATTTGCACATGAATTCTGATCTTTACATATATGGTACGGGAAATGTAGAGATACTTCCTAATGTTTTGATGGAATGTCCTTTGGAGGGCTGTAGTATTATTTTTAATATGTCTGGAAACGTTAGAGTTGGTCAGTCTGCAGCAGTTGTTGCTAGTTCTGTGTTTATTTCTGCTGCAAATCTAACAATAGAATATTATTCTTCAATCAACACAACATCTCTTGGTGGATCACCTCCATCCCAAACGAGTGGTACACCCATTGGCTATGATGGAGCTGGTGGCGGGCATGGTGGCCGTGGTGCTTCATGTTTTAAACATAATCAGACAAGTTTTTGGGGAGGGGATGTTTATGCATGGTCTACACTATCTGAACCATGGAGTTATGGGAGCAGGGGTGGTGGTATATCTCCAGAACTTCCATTAGGAGGGAGTGGTGGAGGACGTGTAAAACTTCTGATAAAGGAAGTTCTAATTGTAGATGGGTCTGTTACTGCTGAAGGTGGATATGGGGGGTCAACAGGGGGAGGTGGATCTGGCGGAAGTATTTTTGTACATGCCATAAAGTTGAAGGGATGTGGTGCAATAAGTGCTGCAGGAGGGAATGGATGGGGTGGAGGCGGAGGCGGAAGAATATCCTTGGATTGTTACAGCATACAAGAAGATGTAAAAGTTACTGTTCATGGTGGTTTTAGTATTGGTTGTCCTGGCAACGCTGGAGCAGCTGGAACATACTTCAATGCTGATTTACTAAGTTTAAGAGTTAGCAATGGCAATATCACCACAGAAACTGAAACCCCTCTGCTAGACTTTTCAACTACTCCTTTATGGTCAAATGTCTTTGTGGAGAATTGTGCAAAAGTTTTGGTCCCACTTCTTTGGACTAGAGTCCAGGTGAGAGGCCAAATTAGTATATATTCTGGAGGAAGCATTGTTTTTGGACTCTCTAAGTTCCCAGTTTCTGAGTTTGAATTGGTTGCGGAAGAACTTTTGATGAGTGATTCTATCATAAAGGTGTTTGGTGCTCTGAGAGTAGCTGTCAAGATGTTGTTAATGTGGAACTCCACAATTCAAATAGATGGAGTTGGAAACACTGTTGTTACTTCTTCAGTTCTTGAAGTCAGAAACCTGGTTGTTCTGAGGCAAAACTCAGTCATTAGTTCCAATACAAACTTGGTTATGTACGGTCAAGGCCTACTGAAACTGACTGGTCATGGTGATGCAATCATAGGCCACCGACTTTCTTTGTCTCTCTTCTATAACATAACTGTTGGCCCTGGTTCACTACTTCAGGCTCCATTAGATTACGACACAAGTAGGAGTGCGGTAACAACGTCACTATGTGAGAGTCAGTTATGTCCAATCGATCTGATAACACCCCCAGATGATTGCCATTTTAATAGTTCCCTTTCTTTTTCACTTCAAATCTGTCGTGTTGAGGACCTTCTTGTGAATGGTTTTATCAAGGGAAGTGTTATTCACATCCACAGGGCAAGGACAGTCATTGTGGGATCAGATGGCCTGATTACATCATCAGAATTTGGTTGCAGCGAGGGCATTGGTAAGGGAAGCTTTTCAAATGGAGCTGGCAGTGGAGCAGGACATGGTGGAAGAGGGGGTTCTGGCTATTTTAATGGCTGGGTGAGCTATGGAGGTGATGAATATGGCGATGCTGATCTTCCTTGTGAAATGGGAAGTGGGACTGTGGGACCTGATCACATTTTTGGGAATGCATTTGGAGGGGGGGTTACAGTGATTGGATCCATGCAGTGGCCTCTGCAACTGCTAGATATTTATGGATCTTTGAAGGCTGATGGCCAAAGCGGTGACAGATCTTCAAGAAATCATAATGGGTCAGTTGTTGGTGGAATTGGAGGTGGTTCTGGTGGAACAATCCTCCTTTTCCTTCAAGAACTTAGGCTTCATCAGAGCTCATCTTTAACTGTTACTGGTGGCAATGGTAGACCTCCTGGTGGAGGTGGTGGCGGGGGCGGGAGAATTCATTTACACTGGTCGAATATCAATATTGGGGAGGAATACATTCCCGTTGCAAGTATAAGTGGTTCCATCAACAGCAGTGGAGGTGCTGGTAACAATGGTGGTCTCCATGGTGGAAAAGGCACAGTTACAGGAAGAGAATGCCCCAAAGGTCTCTTTGGCACTTTCTGCGAAGAATGCCCAATTGGCACTTACAAAGACGTTGATGGTTCTGATGCAAGTCTTTGCACTCAGTGTTCGCTTGATCTTCTTCCCAAGCGTGCAAATTTCATTTATGTAAGAGGTGGAGTTAGTCAATCATATTGCCCCTATAGGTGCATCTCAGATAAATATAGGATGCCAAACTGTTATACGCCTCTTGAGGACCTGGTAATGAAATGGGTTGGATACAGTTCAAATTCCTATAGCAGTGCCAATTCAATTGAACGCCACCCTCACTGCCATTTTCCATACCTTCTTTCCTTATCTGAGGTGCGAGGAACAAGAGCTGAAGAAACCCAGAATCATGTTCACAGAATGTACTTTATGGGTCCCAACACATTTGGAGAACCATGGCATCTTCCTTACTCTCCTCCGAATGCAATCATTGAAATTGTGTACGAAGATGCTTTTAACAGATTCATCGATGAGATAAATTCCGTTGCTGCATATCAGTGGTGGGAAGGGTCAGTGAACAGCATTCTCTCCATTCTTGCTTATCCTTGTGCATGGTCCTGGAAACAGTGGCGGCGCAAACATAAAGTTCATCGCCTTCAGGAATATGTAAAGTCTGAGTATGACCATTCATGTCTTCGCTCTTGTAGATCCCGCGCTTTATACAAAGGGATGAAGGTTGGAGCAACATCAGATCTAATGGTAGCATACATAGATTTTTTTCTTGGGGGTGATGAAAAGCGTTTAGACATGGTTTCAATGATTGAGAAGAGATACCCGATGTGTGTAATTTTTGGTGGGGATGGAAGCTATATGTCACCTTATAATCTTCATAGTGATGCATTGTTGACCAATCTCATTGGGCAGCATGTACCAGAAAGTGTTTGGAATAGATTGGTGGATGGCTTTAATGCGCAGTTGAGAACAGTGAGGCATGGATCTATCCGTTCTGGCCTAATTCCTGTTATTGATTGGGTAAATAGTCACACAAATCCGCAACTTGAGTTCCATGGTGTGAAAATTGAGCTTGGATGGTTCCAAGCAACAGCATCCGGATACTATCAACTTGGTATCTTAGTAGCCCTTGGTGATTATTATCTTCATGATAGAGGCCGTGAATTGGATATTTGCGATGAATCTTTCAGGTAA 5076 44.94 MLVAARRTVGAKRARLGHGLFGPNEITNWSSGVAAKCRSRVDDAGLGGLCWMGGSYCERIVRPFYANLELSTHPLELRTYIFGRELRLTPNELNIMLGCDLEGPSDQYSHVSWDPLFISRGEGLAVLRFLHRDPEIVECKKPKGRELNVIARVIHLMMTYTILPRDGYRDHVSCMDLYLLEKVFTRKKMDIGYVILTESRRDGHRRVQQIKSGPNGVSKVGGKWIRKAPKQPPLVSQLPAPPPPSVAQPSAPSAEQTLASPLQHMEEDASQLMHSPPSQTSYFTLMPEETSSWMSRMEELHHMALTRIRMMEEHFPMAHIQIKKVEERAEERHHTIAIRCQLAPPAVLAESRDLMDVFKKYVALNTRKNVETCVILGGKLLDGDYIITNIIFLDQVGTPNTVRSLLCILVLIQTYMQCYAVNEKDIFVFQQERGLLTLWWIHTYSKQNCFMSSIDLHTQYAYQQLMPQAISIIVAPIDKEQVDKVGVHCHVCLSVIAHMYKFLKRSPREVNARDCMDTRDANQLPPVTGEKGSDDYDRENWMHETLAPLSDRSLMISSSYYDTSTLSFPRNYLVSCEDLKGVGSFDTTCLLKSHLHMNSDLYIYGTGNVEILPNVLMECPLEGCSIIFNMSGNVRVGQSAAVVASSVFISAANLTIEYYSSINTTSLGGSPPSQTSGTPIGYDGAGGGHGGRGASCFKHNQTSFWGGDVYAWSTLSEPWSYGSRGGGISPELPLGGSGGGRVKLLIKEVLIVDGSVTAEGGYGGSTGGGGSGGSIFVHAIKLKGCGAISAAGGNGWGGGGGGRISLDCYSIQEDVKVTVHGGFSIGCPGNAGAAGTYFNADLLSLRVSNGNITTETETPLLDFSTTPLWSNVFVENCAKVLVPLLWTRVQVRGQISIYSGGSIVFGLSKFPVSEFELVAEELLMSDSIIKVFGALRVAVKMLLMWNSTIQIDGVGNTVVTSSVLEVRNLVVLRQNSVISSNTNLVMYGQGLLKLTGHGDAIIGHRLSLSLFYNITVGPGSLLQAPLDYDTSRSAVTTSLCESQLCPIDLITPPDDCHFNSSLSFSLQICRVEDLLVNGFIKGSVIHIHRARTVIVGSDGLITSSEFGCSEGIGKGSFSNGAGSGAGHGGRGGSGYFNGWVSYGGDEYGDADLPCEMGSGTVGPDHIFGNAFGGGVTVIGSMQWPLQLLDIYGSLKADGQSGDRSSRNHNGSVVGGIGGGSGGTILLFLQELRLHQSSSLTVTGGNGRPPGGGGGGGGRIHLHWSNINIGEEYIPVASISGSINSSGGAGNNGGLHGGKGTVTGRECPKGLFGTFCEECPIGTYKDVDGSDASLCTQCSLDLLPKRANFIYVRGGVSQSYCPYRCISDKYRMPNCYTPLEDLVMKWVGYSSNSYSSANSIERHPHCHFPYLLSLSEVRGTRAEETQNHVHRMYFMGPNTFGEPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYQWWEGSVNSILSILAYPCAWSWKQWRRKHKVHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATSDLMVAYIDFFLGGDEKRLDMVSMIEKRYPMCVIFGGDGSYMSPYNLHSDALLTNLIGQHVPESVWNRLVDGFNAQLRTVRHGSIRSGLIPVIDWVNSHTNPQLEFHGVKIELGWFQATASGYYQLGILVALGDYYLHDRGRELDICDESFR 1691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 33795824 33831987 - BLOR12005 Blo03g00824 58288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00824 1691 SMART GCC2_GCC3_2 1312 1360 - -
Blo03g00824 1691 PANTHER MRAZ 570 1679 - -
Blo03g00824 1691 SUPERFAMILY JAB1/MPN domain 352 480 - -
Blo03g00824 1691 Gene3D Cytidine Deaminase, domain 2 331 518 - -
Blo03g00824 1691 MobiDBLite consensus disorder prediction 234 249 - -
Blo03g00824 1691 PANTHER EPHRIN TYPE-B RECEPTOR 570 1679 - -
Blo03g00824 1691 MobiDBLite consensus disorder prediction 232 258 - -
Blo03g00824 1691 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 365 467 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo03g00824 1691 ProSiteProfiles MPN domain profile. 347 496 IPR037518 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00824 - - - qsu:112034708 1678.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00824 Blo-Chr3:33795824 Blo17g00059 Blo-Chr17:421766 0 dispersed
Blo04g00829 Blo-Chr4:8745972 Blo03g00824 Blo-Chr3:33795824 8.87E-42 dispersed
Blo05g00352 Blo-Chr5:4133037 Blo03g00824 Blo-Chr3:33795824 7.00E-19 dispersed
Blo05g00530 Blo-Chr5:10027744 Blo03g00824 Blo-Chr3:33795824 3.17E-27 dispersed
Blo05g00653 Blo-Chr5:21252744 Blo03g00824 Blo-Chr3:33795824 1.09E-20 dispersed
Blo11g00815 Blo-Chr11:13394170 Blo03g00824 Blo-Chr3:33795824 8.56E-33 dispersed
Blo16g00395 Blo-Chr16:14158705 Blo03g00824 Blo-Chr3:33795824 6.21E-30 dispersed
Blo18g00514 Blo-Chr18:6515799 Blo03g00824 Blo-Chr3:33795824 5.42E-20 dispersed
Blo18g00644 Blo-Chr18:11326874 Blo03g00824 Blo-Chr3:33795824 9.63E-41 dispersed
Blo03g00824 Blo-Chr3:33795824 Blo06g00589 Blo-Chr6:28629030 7.39E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g597 . . . . . . . Bma14g00129 . . Cma02g01584 . Car02g01347 . . . Cpe05g00207 . . . . . . . . . . . . . . . . Cone6ag0621 . . . Chy04g00045 . Blo03g00824 . Bda07g00116 . . Bpe11g00355 . . . Cmo02g01626 . . . . . . . . . . . . . . Cla09g01183 Cam09g1247 Cec09g1264 . . . Cre09g1211 . Csa03g04655 . Cme04g00056
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005833 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00824 Blo_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0