Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00846 ATGGCTCTGTACCATAGACTTCATTTAGCAGCATGGTCAGGTAAAATAGAGGCTGTAAATTATCTATGCAAGAACAAGGCTGATGTTGGTGCTACTGCCATGGATGATATGGGAGCGATTCATTTTGCTTCTCAAAAGGGTCATTTAGATGTTGTTCGAGCTCTAGTTTCATTTGGGGGATCTGTCAAAGCTTCTACTCGCAAAGGCATGACTCCATTACACTACGCCGTTCAAGGGTCTTATCTTGAGCTCGTGAAGTATTTGGTCAAGAAAGGTGGGAGTCTTACCACCAAGACTAAATCCGGGATGACTCCCCTTGATCTTGCTACCAATGAAGAACTCCGCTCCTTTTTAGAAGAATCGGGGCGTTTGCCCAAGAAAGAAGATCTGAATGAGAAAAATAATGACGAAAAGCCCGATTCAAAACCATCGGTTTCTGATAGAGAAGGAAGTTCTGGTGTTGGAATAACCGATGCTGGAGTTGATGAACAGCCAGATTGCGAAAAGTTGAAGAGAAAGAGCGATGAAGATGGTGTGCAGGAAGCTTCTTCTGGACGAAAAAAAGCCAAAGTTTCCCTCAATCATCTTCTCAGTGCAGATGACACAGAAGCTGAAGAAAACTCCTGA 627 43.54 MALYHRLHLAAWSGKIEAVNYLCKNKADVGATAMDDMGAIHFASQKGHLDVVRALVSFGGSVKASTRKGMTPLHYAVQGSYLELVKYLVKKGGSLTTKTKSGMTPLDLATNEELRSFLEESGRLPKKEDLNEKNNDEKPDSKPSVSDREGSSGVGITDAGVDEQPDCEKLKRKSDEDGVQEASSGRKKAKVSLNHLLSADDTEAEENS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34222685 34223311 - BLOR12027 Blo03g00846 58310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00846 208 MobiDBLite consensus disorder prediction 162 184 - -
Blo03g00846 208 MobiDBLite consensus disorder prediction 119 208 - -
Blo03g00846 208 ProSiteProfiles Ankyrin repeat region circular profile. 35 64 - -
Blo03g00846 208 SUPERFAMILY Ankyrin repeat 5 117 IPR036770 -
Blo03g00846 208 Gene3D - 4 142 IPR036770 -
Blo03g00846 208 SMART ANK_2a 35 64 IPR002110 GO:0005515
Blo03g00846 208 SMART ANK_2a 68 97 IPR002110 GO:0005515
Blo03g00846 208 SMART ANK_2a 2 31 IPR002110 GO:0005515
Blo03g00846 208 MobiDBLite consensus disorder prediction 119 145 - -
Blo03g00846 208 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Blo03g00846 208 Pfam Ankyrin repeats (3 copies) 7 98 IPR002110 GO:0005515
Blo03g00846 208 PANTHER - 6 206 - -
Blo03g00846 208 PANTHER ANKYRIN REPEAT PROTEIN 6 206 - -
Blo03g00846 208 ProSiteProfiles Ankyrin repeat profile. 35 67 IPR002110 GO:0005515
Blo03g00846 208 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00846 - - - palz:118038617 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00846 Blo-Chr3:34222685 Blo12g00407 Blo-Chr12:21042084 8.40E-06 dispersed
Blo03g00846 Blo-Chr3:34222685 Blo13g01092 Blo-Chr13:33048210 1.33E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g894 . . . . . . . Bma14g00116 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0531 . . . . . . . Blo03g00846 . Bda07g00133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013469 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00846 Blo_Chr03 FPKM 4.297297 5.133992 12.394929 11.453692 4.18105 3.846401 3.499609 9.615029 10.924476 11.293929