Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00870 ATGGGGAAACGAGGGGGAGAGACGGTGAATGAGTTTTCATTCAAATTCTGGGATTTAGCCATTGTTGTTGCTGTTGCATTGGGGTTTGGTCTGTCTCTCTTCTGCATCTACCTCACCATGCCACCTTCAGATTATAGCTTTCTTAAGCTTCCTCGCAATCTCGAAGATCTTAAAATCCTCAGAGATCATCTGGAGGACTATACGAGTGACTACACTACGCAGGTCTTGGCATGGTACTGCATGGTTTACATCTTTATGCAGACCTTCATGATTCCGGGGACTGTGTTCATGTCTTTGTTGGCCGGAGCCCTTTTCGGAGTCTTCAAAGGGGTAGCCTTAGTAGTATTCACCGCCACAGCCGGTGCTTCTTCTTGCTATTATCTATCGAAGATGATCGGCCGGCCACTCGTATTCTCTCTGTGGCCTGGCAAGGTGAAGTTTTTCCAGGATCAGGTATCAAAAAGAAGAAAAGGGCTGTTGAATTATATGCTTTTTTTGAGATTGACTCCGACTTTGCCAAACACTTTTATCAATTTTGCATCTCCGATCGTTGATGTGCCTTATAGTGTTTTCTTCTTCGCCACCTTCGTCGGTCTCATACCTGCAGCATATGTCACTGTCCGGGCCGGATTGGCGCTGGGAGATCTGAAATCAGTAGGGGATCTCTACGACTTTAGCTCGATTGCCACTCTGTTTCTGATAGGAGTGGTGTCAATTGCACCAACTCTAGTGTTTGTGAAAATGCGTGCGAGGGATACTGCGTCTTCGAAGACTGTGTGTGTAATGGACGCCTCTGGAACACTGGGCTCGAGCATTGTCGAGCGGCTTCTCCAGAGCGGCTACAGTGTTCATGCTGCTGTTCAAAGCCATGGGGAATTGATGCTTAAAGGGTGTGATGAGAAGAGGCTGAAGATTTTCCATTCGGATCCCTTTGATTACCAGAGTATAATTGATGCCTTGAGAGGCTGTTCTGGCTTGTTTTATGTGTTTGAGCCTCCCCTAGACCATCCCACCTATGATGAATTCATGGCAGAAGTGGAGGTGAGAGCAGCACACAATGTAATAGAAGCATGCGCTCAAACAGAAACCATAGACAAAGTCGTCTTCACATCTTCTGTCACTGCTGTCATTTGGAGAGACGATCGCAATTCCATTGCATCGAACTTGGACGAACGTGTTTGGAGCGATCTCAATTTTTGCCGTAAATTCAAGCTATGGCATGGCCTATCCAAGACATTAGCAGAGAGGAGTGCATGGGCATTAGCCATGGACAGAGGAGTAAATCTCGTGTCCATAAACGGAGGATTACTCATAACCTCCGATCTCACTATAGAAAACCCGTATTTAAAAGGGGCGGCCGAGATGTACGAAGACGGCTTATTAGTCACGGCCGATCTAAATTTCTTGGTCGATGCACACAGCCGTGTTTTTCAAGACACCTCGTCGTATGGACGCTATCTCTGCTTCAATCACGTCATCAACCGAAACAAAGACGCCATCGAGCTCGCTCGAAAATTGACGCCTCTAGCCTTGGCACCTCCGAGGTTAGTAGATGGAATATATACGAGGATCATTCAACAAAGAATGAGCAATAAGAAACTTAACAAGTTAATGGTGGATCTTGAGGCTGGACCTCAACTGGACTGA 1647 46.51 MGKRGGETVNEFSFKFWDLAIVVAVALGFGLSLFCIYLTMPPSDYSFLKLPRNLEDLKILRDHLEDYTSDYTTQVLAWYCMVYIFMQTFMIPGTVFMSLLAGALFGVFKGVALVVFTATAGASSCYYLSKMIGRPLVFSLWPGKVKFFQDQVSKRRKGLLNYMLFLRLTPTLPNTFINFASPIVDVPYSVFFFATFVGLIPAAYVTVRAGLALGDLKSVGDLYDFSSIATLFLIGVVSIAPTLVFVKMRARDTASSKTVCVMDASGTLGSSIVERLLQSGYSVHAAVQSHGELMLKGCDEKRLKIFHSDPFDYQSIIDALRGCSGLFYVFEPPLDHPTYDEFMAEVEVRAAHNVIEACAQTETIDKVVFTSSVTAVIWRDDRNSIASNLDERVWSDLNFCRKFKLWHGLSKTLAERSAWALAMDRGVNLVSINGGLLITSDLTIENPYLKGAAEMYEDGLLVTADLNFLVDAHSRVFQDTSSYGRYLCFNHVINRNKDAIELARKLTPLALAPPRLVDGIYTRIIQQRMSNKKLNKLMVDLEAGPQLD 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34521836 34526632 - BLOR12051 Blo03g00870 58334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00870 548 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 252 544 - -
Blo03g00870 548 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 261 398 IPR002225 GO:0003854|GO:0006694|GO:0016616
Blo03g00870 548 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 252 544 - -
Blo03g00870 548 Pfam SNARE associated Golgi protein 91 210 IPR032816 -
Blo03g00870 548 Gene3D - 249 546 - -
Blo03g00870 548 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 255 532 IPR036291 -
Blo03g00870 548 CDD FR_SDR_e 259 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00870 - - - mnt:21385456 430.639
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00870 Blo19g00196 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00870 Blo-Chr3:34521836 Blo07g01087 Blo-Chr7:30695826 7.26E-129 dispersed
Blo18g00240 Blo-Chr18:2364995 Blo03g00870 Blo-Chr3:34521836 1.06E-08 dispersed
Blo16g00691 Blo-Chr16:26617404 Blo03g00870 Blo-Chr3:34521836 2.32E-06 transposed
Blo19g00199 Blo-Chr19:8917179 Blo03g00870 Blo-Chr3:34521836 2.56E-155 transposed
Blo19g00196 Blo-Chr19:8823078 Blo03g00870 Blo-Chr3:34521836 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g685 . . . . . . Bma07g00925 Bma14g00160 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0472 . . . . . . Blo03g00870 Blo19g00196 . Bda09g00737 Bpe08g00826 Bpe11g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00870 Blo_Chr03 FPKM 0.41374 0.587445 29.492725 29.406605 69.879524 75.50309 68.721916 33.586666 27.928841 30.464624