Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00875 ATGAGTTCGTCGGAGATGGAGTCCGACTTGCCTGATCTAGTTTGCCACCTCGACAACGTCCAAGGGATGGTCGATGCCCTCACCGCCATCCGATGGAAACGCCATCAGGATGCTGTCATCGAATTGTCGGAGCACGGCATAGTTTTGATTGTTGAGGAATCATGTTGCGTTCAAGCTAAAGTCTATCTTCAGCGTGAGCTTTTCATACGCTATGAGTACAGTGCACAAGGGAGGCCAAGATTAGGAGTGAGCCTGGGCATATTTGTGGATTGCTTGAACACATTTTCTGTTCCTGGACGTTCAAGCATGATTGAAATTCGATATCCAGGGCCTGACATGCAGCTTCTTATAAAATCCATCGATTCGCTTCATGCTTGTATTTATGCGGAGATTAGAACAAGAATCCCTGATACAATTTCTTGGGATTACAATTTTGAAGCAGCCGGAAGTGCTCCACTTTGTTTTACTGTTAAGTCTGCAGCACTGAAGGAAGCCATTGATGATCTTGAGTGGCCAGGATCAAGCATCCAGATCATTCTACAACCCGATCCTCCTTCTGTAACTTTTAAAGGCGAAGGCCATGGAGACTTGCAGATAGGCTTTTATTTTCGTAACTTTCAATTATTGCAGATAGATTTCATGTATTACACGAACACTGATCTCTTGATTTCATTTCAATGCGATCATCAAGTTTCTTACAAGTACAAATACAAATTTCTCAGAGTTACAACGTCAAATTTACCTGGCAGTGTAATTAAAGATAACAGAGGTAGCAAATTGACGATTGGAAGAGGGGGAATGTTAAAAGTACAGCACCTTGTCTCAGTGGCAAGATCATCTACATCAAATCAACATGTTGACGCCGCTGGAAATTACCACCCGAGTAGAATTGCATTTATTGAGTTCTTTGTGAAACCAGAAGAAGAGGAAGACTAA 936 42.41 MSSSEMESDLPDLVCHLDNVQGMVDALTAIRWKRHQDAVIELSEHGIVLIVEESCCVQAKVYLQRELFIRYEYSAQGRPRLGVSLGIFVDCLNTFSVPGRSSMIEIRYPGPDMQLLIKSIDSLHACIYAEIRTRIPDTISWDYNFEAAGSAPLCFTVKSAALKEAIDDLEWPGSSIQIILQPDPPSVTFKGEGHGDLQIGFYFRNFQLLQIDFMYYTNTDLLISFQCDHQVSYKYKYKFLRVTTSNLPGSVIKDNRGSKLTIGRGGMLKVQHLVSVARSSTSNQHVDAAGNYHPSRIAFIEFFVKPEEEED 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34594901 34597808 - BLOR12056 Blo03g00875 58339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00875 311 PRINTS Repair protein Rad1/Rec1 family signature 59 75 IPR003021 GO:0000077
Blo03g00875 311 PRINTS Repair protein Rad1/Rec1 family signature 257 274 IPR003021 GO:0000077
Blo03g00875 311 PRINTS Repair protein Rad1/Rec1 family signature 15 32 IPR003021 GO:0000077
Blo03g00875 311 PRINTS Repair protein Rad1/Rec1 family signature 294 309 IPR003021 GO:0000077
Blo03g00875 311 CDD PCNA 14 274 - -
Blo03g00875 311 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD1 7 310 IPR003021 GO:0000077
Blo03g00875 311 Pfam Repair protein Rad1/Rec1/Rad17 14 247 IPR003021 GO:0000077
Blo03g00875 311 Gene3D - 11 308 - -
Blo03g00875 311 SUPERFAMILY DNA clamp 154 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00875 K02830 HRAD1, RAD17; cell cycle checkpoint protein [EC:3.1.11.2] - jre:109020226 514.998
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0481 Cone12ag0476 . . . . . . Blo03g00875 . Bda07g00084 . . Bpe11g00321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010333 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00875 Blo_Chr03 FPKM 19.630184 19.720959 6.242907 6.422556 11.578566 13.618802 12.341816 1.688916 1.88396 1.992288