Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00879 ATGGAACTTTTTCCTGCTCAACCAGATTTGTCTCTGCAAATCAGCCCTCCAAACTCCAATCACTCGTCAGGTTGGAGAAGAAGAAGAGAAGAAGAGGTGGATTTGGGTTTCTGGAAAATAGCTTTAGATTCAAGAACCTCCATCTCATCAATGGCGAAAAGTGACAATTATTTTGATCTTTCTCTCTCTAATCCACGTCTCACTGAACCTAACCCAAACAATTTTCATCACCTTCAAAGTGTTAACGGCAATCTCTTGCAGACCTTCCAACCAAACCAGTTGCCTCACCTCCATAATCTCCATCAACAGAAGATTTTACATCATCATCAACCACTTCTCAATAACCACCAGCATCAGCGTGAGCTTGGTCCTGAGCTTGGATTCTTGAGACCCATTAGAGGGATTCCAGTTTATCAGAATCCTCCTCCTTTTTCATTTGCTCAACACCGTAATTTAGACTCCACTTCTTTGTCTTCCTCCATTGTTAACAGTAGTTCAACTTCTTCAAGCTCGTATCAGGCACAAGGTCTTATGCGATCGAGATTCTTATCAAGATTTCCAGCCAAACGTTCAATGAGAGCGCCGAGGATGCGGTGGACTACCACTCTACATGCTCATTTTGTTCATGCTGTTGAGCTCTTAGGCGGCCATGAAAGGGCTACACCAAAGTCAGTTCTTGAGCTTATGGATGTGAAAGATCTCACCTTGGCCCATGTTAAATCCCATTTACAGATGTATAGAACCGTGAAGACCACTGACAGAGCTGCAGGTTCTTCAGATTTGTACGAGAACGGGTCTTCTGGGGATAATACGGAAGAGTTAATGGTTGATGTTCATAATCCAAGAAGAGGGCCTGAGCTTTCTATTCAGAAGGGAAGGCAAAATGCTCATCAAGACAAGGATTACGGCGGACTTTGGTGCAATTCTTCAAGCAGGGAAGCTTGGTTGCATGGAAAACCAAATGATTCCTGCCGAAACTTATCATCCATGGAGAAAGAATTGGATCCAAAGAGCTTAAGCTATGAGAGAATATCCGATATAAGCTCATCAACAAATCTTTCGGGGACTGAAGAGGGTTTTAGAGGGAGAATCTGGTGCTACCCAGATGAGAAAACTGGAGGAAAAAGAAAGGGAAAAGAAAAGAAAGGGAAAAGAAAAGAAAAGAAAGGAAAGGAAAAAGAAAAGAAAGGAAAAGGAAAAAGAAAAAGGAAAGAGCCAAAGAAGAAGACAAGAAAGACAGAGGGGAAACAAAAGAAGAAGAGCTGTGGGGGTATAAAACTAAAGCATGTCCTTTTCCCTATCAAGTTGTGA 1311 42.18 MELFPAQPDLSLQISPPNSNHSSGWRRRREEEVDLGFWKIALDSRTSISSMAKSDNYFDLSLSNPRLTEPNPNNFHHLQSVNGNLLQTFQPNQLPHLHNLHQQKILHHHQPLLNNHQHQRELGPELGFLRPIRGIPVYQNPPPFSFAQHRNLDSTSLSSSIVNSSSTSSSSYQAQGLMRSRFLSRFPAKRSMRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAGSSDLYENGSSGDNTEELMVDVHNPRRGPELSIQKGRQNAHQDKDYGGLWCNSSSREAWLHGKPNDSCRNLSSMEKELDPKSLSYERISDISSSTNLSGTEEGFRGRIWCYPDEKTGGKRKGKEKKGKRKEKKGKEKEKKGKGKRKRKEPKKKTRKTEGKQKKKSCGGIKLKHVLFPIKL 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34644808 34649160 + BLOR12060 Blo03g00879 58343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00879 436 MobiDBLite consensus disorder prediction 377 416 - -
Blo03g00879 436 SUPERFAMILY Homeodomain-like 192 248 IPR009057 -
Blo03g00879 436 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 351 IPR044847 GO:0000976|GO:0006355|GO:0010158
Blo03g00879 436 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 195 248 IPR006447 GO:0003677
Blo03g00879 436 MobiDBLite consensus disorder prediction 1 27 - -
Blo03g00879 436 Gene3D - 194 251 - -
Blo03g00879 436 MobiDBLite consensus disorder prediction 371 424 - -
Blo03g00879 436 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 351 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00879 - - - qsu:112010545 474.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00879 Blo-Chr3:34644808 Blo19g00245 Blo-Chr19:12987645 0 dispersed
Blo03g00879 Blo-Chr3:34644808 Blo18g00480 Blo-Chr18:5818249 1.81E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo03g00879 . 101 260 G2-like Transcription Factor Family AT5G16560 51.5 2.3e-39 160.2
Blo18g00828 CCT 2 187 G2-like Transcription Factor Family AT5G42630 58.7 2.1e-42 169.5
Blo16g00798 . 1 444 G2-like Transcription Factor Family AT2G03500 51.4 3.2e-92 335.9
Blo01g00489 BCT,CCT 3 257 G2-like Transcription Factor Family AT1G25550 53.2 2.7e-60 229.2
Blo16g01054 BCT,CCT 3 255 G2-like Transcription Factor Family AT1G25550 52.5 8.0e-60 227.6
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.3 1.1e-53 207.2
Blo16g01054 BCT,CCT 3 287 G2-like Transcription Factor Family AT1G68670 51.9 3.2e-69 259.2
Blo11g00832 CCT 13 245 G2-like Transcription Factor Family AT3G25790 52.8 5.7e-44 174.9
Blo01g00489 BCT,CCT 20 300 G2-like Transcription Factor Family AT1G13300 50.3 1.1e-58 224.2
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT5G05090 52.8 1.5e-71 266.5
Blo02g00231 . 204 490 G2-like Transcription Factor Family AT4G13640 57.6 2.4e-62 236.1
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT4G13640 57.4 1.2e-61 233.8
Blo02g00231 . 204 502 G2-like Transcription Factor Family AT3G24120 55.9 4.2e-75 278.5
Blo16g00685 . 12 312 G2-like Transcription Factor Family AT3G24120 52.2 2.0e-69 259.6
Blo13g00605 BCT,CCT 34 197 G2-like Transcription Factor Family AT3G24120 58.2 2.1e-42 169.9
Blo04g00455 BCT,CCT 5 156 G2-like Transcription Factor Family AT3G24120 60.4 1.1e-41 167.5
Blo07g01419 . 22 216 G2-like Transcription Factor Family AT1G69580 54.0 1.0e-37 154.5
Blo04g00455 BCT,CCT 1 284 G2-like Transcription Factor Family AT1G79430 51.6 1.6e-65 246.9
Blo13g00605 BCT,CCT 19 255 G2-like Transcription Factor Family AT1G79430 54.0 1.8e-59 226.9
Blo02g00231 . 228 397 G2-like Transcription Factor Family AT1G79430 60.0 6.5e-38 155.2
Blo13g01012 . 56 306 G2-like Transcription Factor Family AT2G01060 51.2 8.1e-53 204.1
Blo12g00624 . 1 310 G2-like Transcription Factor Family AT3G10760 62.5 4.3e-92 335.1
Blo12g00624 . 1 208 G2-like Transcription Factor Family AT2G40970 63.0 6.3e-64 241.1
Blo10g00280 BCT,CCT 82 331 G2-like Transcription Factor Family AT4G28610 51.5 2.8e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12137 None None None None Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00879 Blo_Chr03 FPKM 28.675348 31.657063 29.13114 30.181629 18.458 15.826746 17.333582 75.09024 74.955009 74.868675