Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00880 ATGACTTGTGGCCGGTGTGGGGGTGTGTGGCACAATTCCCACACGTGCGAAGATGGAGGCGAGTCCAGTGGATGTGGCGGCAGAGGCGACAGAGGCAAAGGAAGGTCGGAGGCCACATTTATGGGTTTTAGAGTCCCCGAGACAGTGTCTGACATAGTCCCCGAGACAGTCACCGAGAGAGTTGCCGAGACAGTTCCCGACATAGTTCCTGAGACCCAGTTAAGTTCAGGCTCACCAAAATCGCATGAAAAAGCGGCTAATCTGGATTTTAAGAACTCTTTGAAAACTCCCAAATCTCCGTGGATGCCTTTTCCCATGTTGTTTGATGCTATTGGCAACAACGTTCCTCCTAACAAAATGGCACTAGTTGAGAAGCACTATGATCTATTCAAGGAAAAGAAAATTAGTCGTGATGAATTTATCAAGAAGCTGAGACTGATTGTTGGAGATGGATTATTGAGGTCTACATTAACAGATCTTCAATGCAAGGTATGA 495 46.67 MTCGRCGGVWHNSHTCEDGGESSGCGGRGDRGKGRSEATFMGFRVPETVSDIVPETVTERVAETVPDIVPETQLSSGSPKSHEKAANLDFKNSLKTPKSPWMPFPMLFDAIGNNVPPNKMALVEKHYDLFKEKKISRDEFIKKLRLIVGDGLLRSTLTDLQCKV 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34663264 34670992 - BLOR12061 Blo03g00880 58344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00880 164 Pfam RCD1-SRO-TAF4 (RST) plant domain 97 161 IPR022003 -
Blo03g00880 164 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 70 163 IPR044964 -
Blo03g00880 164 MobiDBLite consensus disorder prediction 17 36 - -
Blo03g00880 164 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO1-RELATED 70 163 - -
Blo03g00880 164 MobiDBLite consensus disorder prediction 67 86 - -
Blo03g00880 164 ProSiteProfiles RST domain profile. 95 164 IPR022003 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00880 - - - zju:107431560 125.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00880 Blo-Chr3:34663264 Blo02g00097 Blo-Chr2:653513 4.39E-37 dispersed
Blo03g00880 Blo-Chr3:34663264 Blo15g00535 Blo-Chr15:10306443 8.70E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g715 . . . . . . . . . . . . . . . . Cpe05g00159 . . . . . . . . . . . . . . . Cone12ag0487 . . . . . . Blo03g00880 . Bda07g00080 . . . . . . . . . . . . . . Bhi05g00449 . . Lac11g2448 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018170 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00880 Blo_Chr03 FPKM 10.151693 10.902894 10.942601 12.242677 9.817626 9.410642 10.004598 14.228816 13.411373 13.342715