Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00890 ATGGGTGGGAAACTCAAAGAAGTGACCGCCCTAAGCGAACCACTGGCCCAAAAAATTCCGTCAATCACAGATGCTGAATCCGAGAAGAAGAAAGCGAAGAAGAAGAAAACCATAGACGCTGGTTCGGAGCAACCTATCGATGCCAATCCCAAGAGAAAACTTCCAGAGGTTGAGTTATGCGAGAGCAATGGTGTGAAGCGCAAAAAGAAGAAGGACAAGCACAAGAAGGTCCACGACGGCAAAAAGGAAGGTGAAACGCGTGGAGATGAAGAAGAGTTGCAAGAAACTGACGCGATTTGTAAAGGAAACGTGGTAGTCACTGGAAAGGATGTGAAAGAGGGGAAATACACTTCGTTGAAGTCATTTGATGAATCAGGCCTACCAGATGAAGTCCTCGAGTGCTGTAAAAATTTTACGAGCCCTTCGCCGATTCAATCCCACGCCTGGCCATTTTTGTTGCACGGACGTGATTTTATAGGCATTGCTGCCACTGGGTCAGGTAGGAAGACTCTGGCATTTGGGTTACCTGGTATTATGCATGTCTTGAAGAAGAGAAAGGGAAAAATGTCCAGAGGGAGGATTCCTCTTTGCCTTGTACTCTCACCTACGAGGGAATTAGCTCAACAAATTTCAGATGTGTTGTGTGATGCTGGTAAACCATGTGGTGTAACATCAGTTTGTTTGTATGGAGGAACCTCAAAAGGACCTCAAATATCAGCTCTAAAGTCTGGCATTGATATTGTTATTGGAACTCCTGGACGTTTGAAGGATCTGATCGAGATGGAGGTCTGCTGCCTTAAAGAAGTATCTTATGTGGTTCTCGATGAAGCTGATCGAATGTTAGACATGGGATTTGAACCTGAAGTTCGCTCAATATTGAGCCAGACATGTTCTGCTCGCCAAATGGTAATGTTTAGTGCTACATGGCCGCTACTTGTCCATCAATTGGCTCAAGAATTTATGGATCCTAACCCAGTTAAGGTTGTTGTCGGTTCAGAAGATTTGTCTGCCAACCATGATGTTATGCAAATAGTTGAGGTTTTGGATGATTTTTCACGTGATCAACGCTTGGTTGCTCTGCTAGAGAAGTACCACAAATCACAGAGGAATAGAGTATTAGTTTTTGTCTTGTACAAGAATGAAGCTGATCGAGTGGAAAAGATGTTGCAGAGAAGGGGTTGGAACGCTGTTTCTATACACGGGGATAAAGCGCAATCTGCACGTACAAAGGCACTTTCATTATTTAAGGAGGGGACCAGTCCTTTGATGATTGCTACTGATGTGGCTGCTCGAGGATTGGATATTCCCGATGTTGAAGTTGTAATTAATTACAGTTTTCCTCTCACAACAGAGGATTATGTCCATCGAATTGGAAGAACTGGAAGGGCTGGTAAGAAAGGTGTTGCTCACACTTTCTTCACGCAGCAAAACAAGGGACTTGCTGGGGAGCTAGTGAATGTTCTGAGAGAAGCGGGGCAAATTGTACCGGATGCTCTCCTAAAGTTTGGCACTCATGTAAAAAAGAAGAGGGCCGGGCTTGGCCAGGCCAGTCCTCTTCAAGGGGGCATAGGCTCGGACGAGTTTATAGATTACGAGCTTGTATCTGAGGTAATTGTTCCTTTTGGTAAAAGGAGTGACTGTCGTCGAGGGTTTCGAATCCCTAAACCTAATCAGGATGTATTTGATTATTGTTATTATGGGTTGTGTCATTGCGAAACCTTGTTCGCTGGCAACCCAAGTGACGCTGTTGGATCTACAGATTGCCGACGTTTATCCCTACTGGCTCATGAGGACAGGAGGGAAGTATCGCCAAATACAGAGAACACGGGAGCGGCTGCAATTTCTCTTGGAATAGAAGCAACAGTCGAGTTCAAAGCAGTAGAACACCCTACGGAGCCCTTAGACGACGGGCCGATCCCCTGCCCTTTGCCGGAGCCTTCAATTCTCCACGATGGAAGAATATGGAAGGAGCGAATCTCAGCGGCCACCGCACACAGGAGACCTGAATTTCCGCCGGTGAAGGAACCAGGGGCGATTGAATTCCAAGTTTCAGACGCTAAACAGCGATTAATTCAATCAAAGCCGTTGATTCCGTCTTTTAGCGCACCGGAGCATAACATCATTAACCTCCTCGATGAATCAAACCCATCGGCGACATGA 2160 45.83 MGGKLKEVTALSEPLAQKIPSITDAESEKKKAKKKKTIDAGSEQPIDANPKRKLPEVELCESNGVKRKKKKDKHKKVHDGKKEGETRGDEEELQETDAICKGNVVVTGKDVKEGKYTSLKSFDESGLPDEVLECCKNFTSPSPIQSHAWPFLLHGRDFIGIAATGSGRKTLAFGLPGIMHVLKKRKGKMSRGRIPLCLVLSPTRELAQQISDVLCDAGKPCGVTSVCLYGGTSKGPQISALKSGIDIVIGTPGRLKDLIEMEVCCLKEVSYVVLDEADRMLDMGFEPEVRSILSQTCSARQMVMFSATWPLLVHQLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDDFSRDQRLVALLEKYHKSQRNRVLVFVLYKNEADRVEKMLQRRGWNAVSIHGDKAQSARTKALSLFKEGTSPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKRAGLGQASPLQGGIGSDEFIDYELVSEVIVPFGKRSDCRRGFRIPKPNQDVFDYCYYGLCHCETLFAGNPSDAVGSTDCRRLSLLAHEDRREVSPNTENTGAAAISLGIEATVEFKAVEHPTEPLDDGPIPCPLPEPSILHDGRIWKERISAATAHRRPEFPPVKEPGAIEFQVSDAKQRLIQSKPLIPSFSAPEHNIINLLDESNPSAT 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34828192 34838935 - BLOR12071 Blo03g00890 58354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00890 719 MobiDBLite consensus disorder prediction 23 41 - -
Blo03g00890 719 MobiDBLite consensus disorder prediction 1 94 - -
Blo03g00890 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 477 IPR027417 -
Blo03g00890 719 Gene3D - 333 506 IPR027417 -
Blo03g00890 719 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 273 281 IPR000629 -
Blo03g00890 719 MobiDBLite consensus disorder prediction 49 66 - -
Blo03g00890 719 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 511 - -
Blo03g00890 719 Pfam Helicase conserved C-terminal domain 355 464 IPR001650 -
Blo03g00890 719 MobiDBLite consensus disorder prediction 78 94 - -
Blo03g00890 719 CDD DEADc 136 328 - -
Blo03g00890 719 CDD SF2_C_DEAD 341 473 - -
Blo03g00890 719 SMART helicmild6 383 464 IPR001650 -
Blo03g00890 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 327 IPR014001 -
Blo03g00890 719 Pfam DEAD/DEAH box helicase 143 310 IPR011545 GO:0003676|GO:0005524
Blo03g00890 719 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 503 IPR001650 -
Blo03g00890 719 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 146 IPR014014 GO:0003724
Blo03g00890 719 Gene3D - 94 332 IPR027417 -
Blo03g00890 719 PANTHER BNAA08G07020D PROTEIN 1 511 - -
Blo03g00890 719 SMART ultradead3 137 344 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00890 K14811 DBP3; ATP-dependent RNA helicase DBP3 [EC:3.6.4.13] - csv:101220294 731.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo02g00971 Blo03g00890 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00971 Blo-Chr2:37686663 Blo03g00890 Blo-Chr3:34828192 4.56E-33 dispersed
Blo03g00890 Blo-Chr3:34828192 Blo18g00330 Blo-Chr18:3430324 3.40E-107 dispersed
Blo03g00890 Blo-Chr3:34828192 Blo07g00769 Blo-Chr7:24850765 1.56E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g758 Blo02g00971 . . Bda08g00646 Bpe05g00513 . . . Cmo06g00623 Cmo16g01245 . . . . . Cpe14g00992 . . . . . . . . Cla10g00120 Cam10g0118 Cec10g0127 Cco10g0127 Clacu10g0124 Cmu10g0971 Cre10g0381 . . . . Lsi07g01153 . . Cme06g02432 Blo03g00890 . Bda07g00070 . . Bpe11g00309 Bma05g00699 . . . . Cma06g00616 Cma16g01198 Car06g00549 Car16g01128 . . . . . . . . . . . . . . . . . Csa03g00124 Chy06g02181 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008343 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00890 Blo_Chr03 FPKM 9.35745 10.520275 31.652254 34.331867 23.586477 22.122143 22.036873 2.243119 2.359536 2.069621