Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00905 ATGGATGTGCCTAGATTTGAACGCCTGAAGAATGGCAGCGGTGGTCCAACTCCGTATCTTTACGTTGCAAACTGTGGCCCGGCCGTCGGAGTTCCTCATTCAACCATTGCCAAGGTGTTTCGAAGCTTTGGGGAGGTGATCGGGCTATATGACGCCGATGAGACCGGGGCTCGCGTCGTTGTTTGCTATTCCGAAGAATCCAGCGCCCGAGCCGCCTTACGCGCCTTAGATGGACTGTCATGTCCGCCCCTGGGAGGCCGCACCCTCCACGTACGTTACTCCATTCTTAAACCTACTCCTTCCCAACTCGGTGATTCAGTTTCGGTGTCTTTAGGAGCTGAAGAGTTGGAAATTCCCGGTCTATTCTTGATTCACGAGTTCGTCAATTCAGAAGAAGAGGAGCAATTGCTTAGGGAAGTAGATGAGAGGCCTTGGAAACGTCTTTCGAAAAGAAGAGTTCAGCACTATGGTTATGAATTTTGTTATCAAACCAGGAATGTCAACCCAAGACATTTCTTGGGTGAACTCCCATCATTTGTCTCTCCCATACTGGACAGAATAAAATCATTTCCTAAATCCAGTGTTGCTCTCAATTTAGTTCTAGACCAATTGACAGTGAATGAATATCCCCCTGGTGTTGGCTTGTCCCCCCATATAGACACACATTCTGCATTTGAAGGATGTATTTTCAGTCTATCTTTGGCAGGACCTTGCATAATGGAGTTCAGGAAATATGCACAAGGTTTGCTGCATAAAAGCTCCTTAGGTTCTGATATGAATATGGAAACTGAAGCTGATTTGGATTACCAAAGGAAGGCTCTCCACCTTCCACCTCGGTCTATGCTCTTATTGTCGGGGGAGGCACGGTATGCTTGGCATCATTACATTCCGCACCACAAGATAGACGTGGTGAATAACAATGTGATTAAAAGGGCTCAAAGGCGGGTTTCTTTCACATTTCGAAAGGTCAGAAGAGATCCTTGTCGATGTGAATATGCCCATTACTGTGACTCCCAGCAAAATCAATAA 1029 46.45 MDVPRFERLKNGSGGPTPYLYVANCGPAVGVPHSTIAKVFRSFGEVIGLYDADETGARVVVCYSEESSARAALRALDGLSCPPLGGRTLHVRYSILKPTPSQLGDSVSVSLGAEELEIPGLFLIHEFVNSEEEEQLLREVDERPWKRLSKRRVQHYGYEFCYQTRNVNPRHFLGELPSFVSPILDRIKSFPKSSVALNLVLDQLTVNEYPPGVGLSPHIDTHSAFEGCIFSLSLAGPCIMEFRKYAQGLLHKSSLGSDMNMETEADLDYQRKALHLPPRSMLLLSGEARYAWHHYIPHHKIDVVNNNVIKRAQRRVSFTFRKVRRDPCRCEYAHYCDSQQNQ 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35053801 35056814 + BLOR12086 Blo03g00905 58369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00905 342 Coils Coil 342 342 - -
Blo03g00905 342 Gene3D - 113 329 IPR037151 -
Blo03g00905 342 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKBH8 HOMOLOG 13 338 - -
Blo03g00905 342 SUPERFAMILY Clavaminate synthase-like 115 324 - -
Blo03g00905 342 PANTHER UNCHARACTERIZED 13 338 - -
Blo03g00905 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Blo03g00905 342 Pfam 2OG-Fe(II) oxygenase superfamily 123 321 IPR027450 -
Blo03g00905 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 324 IPR005123 -
Blo03g00905 342 SUPERFAMILY RNA-binding domain, RBD 16 102 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00905 K10770 ALKBH8, TRM9; alkylated DNA repair protein alkB homolog 8 [EC:1.14.11.- 2.1.1.229] - csv:101210859 476.092
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00905 Blo-Chr3:35053801 Blo10g00053 Blo-Chr10:519844 6.64E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g942 . . . . . Bpe07g00049 . . . . . . . . . . Cpe02g00587 . . . . . . . . . . . . . . . . Cone6ag0886 Cone9ag0890 . . . . Blo03g00905 . . . . . . Bma12g00627 . . . . . . . . Cpe06g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013705 1 1 1 1 1 0 1 1 0 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00905 Blo_Chr03 FPKM 1.265613 1.466656 0.212153 0.196931 1.91756 1.430244 1.373447 1.056497 1.422715 1.098408