Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00975 ATGGAGGGATTCGAGCCCAAGACGCCACGTAGATCTATTCGATTTGGTGGAGATATTAGAGAAGATTGTGAAGAAACTTCTGGCAATGGGACAATCGGTGGAGTTCGAAAACAACAGGAAACTGAGACAAGTGATGACCCAGCGAAAAGCCCAAAATCTGCAAAAGGACGTCAGAATGTGAAGCAAAGAGAGAGGACCCATCCCTTGGAAGATACGTTCTCTCCTGAGTCACCCAAACAAACGGAGAAAAAGAAGAGGAGATACAATGAAAAAACAGTGGCTAAAAAAGCTTTGGCTTCAAAGAATATAATATCTGACAAAAAGAAGAAGAGTGAAATGGTATCAAAGAGACGTGTGTACTATAAAAAAGTAGTCTATGATGGAGGAGAATTTGAAGTGAAAAATGATGTATATGTGAAGAAGAGAGAGGACGGGAGCTCGGATGATGAACCCGAAATGGAAGAGTGTAGAATATGCTTCGCGTCTGGAAAGGCTGTAATGATTGAATGCGATGATTGTTTAGGTGGTTTCCATTTGAAATGCTTGAAGCCGCCTTTGAAGGAGATTCCTGAGGGCGATTGGATTTGTGAATTTTGTCAGGCTCACAAAATGGGTAAAAATGTGGCGCTTCCAAAACCTCCAAAGGGAAAAAAACTGAGCAGGACGATGAGAGAGAAGCTACTATCTGGTGATCTGTGGGCTGCTCGCATTGAAAATTTATGGAAGGAGGCTGACGGTAGCTACTGGTGCCGAGTTCGTTGGTATATAATCCCGGACGAGACTTCAGCTGGAAGGCAACCACATAACTTGAGGAGGGAGCTTTATCTCACTAATGATTATGCTGACATTGAGTGTAATGTCATGAGCCCAAAAGAATATGCCAGGGCAAAAAATGAAGGGGATGACGTCTTCTTATGTGAGTATGAGTATGACATTCGTTGGCACAGTTTCAGGCGCATTGCTGATATAGATGATGTTGATGAGGATGGAGAAGCAACTAACAGTGATGAAGATTGGAATTTTAGCAAGGATTCAGACTCTGATACAGATGAAGAGTTAGAGTATGAAGAAGAGACTGAGAAAAATTTACAAGCCAGATCATCCTTAGCTCAAGATTCAGCTGCAGAAGAGGGAAAGTTCTTTGGACTTCAAAAGATAGGGGTGAAGAAGATCCTGGAGCATGTGAGATGCCACAAGCAAACTGAACTCGAAAAAGCTAAGGCAGCACTTACTTTGGCATCATTACCAAAGTCTCTACCTTGCAGGAATAAAGAAATGGAGGAGATAACTGCATTTATAAAAGGAGCTATTAGTGATGACAAATGTTTGGGGCGTTGCCTTTATATCCATGGTGTTCCTGGAACTGGCAAGACGATGACTGTACTTGTGGTATTGAGAAATCTAAAGGGCAAAGTTGATTCTGGAAGAATAAGACCTCACTGTTTTGTGGAGGTTAATGTTCTAAAGCTAGCATCACCAGAAAACATATATAGGGTTATATATGAGGCATTAACTGGGCACAGAGTTAGTTGGAAAAAAGCTCTTCAATTGCTGACTGAACGCTTTTCAGACGGAAATAAAGCTCCCAAAGAGGATGAAAGACCTTGTGTTCTGCTCATTGATGAGCTTGATCTTCTTGTAACAAGAAATCAGTCGGTAGCAGCTATTTCAGGAGATGCACGACGTGCACTTGAGATATGCAGGCGCGCTACGGAAATTGTTGATTACCATTTAAAGTTGACTAAAACTTCTAATGCTGTTTCAGAAGGAAAAGAGCTTGTTGTTATGGCCGAGGTAGAAGCAGCCATTCAGGAAATGTTCCAAGCGCCTCATATTCAAGTGATGAAAAACAGTTCCAAAATGAGTAAAATATTTTTGACAGCTATGGTTCATGAACTCTATAAGTCTGGAATGGGCGAAACCACCTTTGAAAAGCTGGCAATGGTTATTTCATGTCTCTGTACGAGCAATGGAGAAACATTTCCTGGATATGATGCACTGTTGAAAGTTGGTTGTAAGTTGGGCGAAAGCAGAATTATTTTATGTGAAGCAGGAGCTAAGCACATGTTGCAAAAATTACAGTTCAATTTCCCAAGTGATGATGTGTCATTTGCTTTAAAAGGCAGCAAGGAGCTTCCATGGTTGGCCAACTTGTTGGTGGGCTGTGGGCTTGACATTGGACCACCCAATGGAGGTGCAAGGTTGGTCAAGCTTGACCTCCGGCCCAAACCTACTGACGCTAACTTGAATGCAAATGAGCGAGCAATGCTGTAG 2274 42.08 MEGFEPKTPRRSIRFGGDIREDCEETSGNGTIGGVRKQQETETSDDPAKSPKSAKGRQNVKQRERTHPLEDTFSPESPKQTEKKKRRYNEKTVAKKALASKNIISDKKKKSEMVSKRRVYYKKVVYDGGEFEVKNDVYVKKREDGSSDDEPEMEECRICFASGKAVMIECDDCLGGFHLKCLKPPLKEIPEGDWICEFCQAHKMGKNVALPKPPKGKKLSRTMREKLLSGDLWAARIENLWKEADGSYWCRVRWYIIPDETSAGRQPHNLRRELYLTNDYADIECNVMSPKEYARAKNEGDDVFLCEYEYDIRWHSFRRIADIDDVDEDGEATNSDEDWNFSKDSDSDTDEELEYEEETEKNLQARSSLAQDSAAEEGKFFGLQKIGVKKILEHVRCHKQTELEKAKAALTLASLPKSLPCRNKEMEEITAFIKGAISDDKCLGRCLYIHGVPGTGKTMTVLVVLRNLKGKVDSGRIRPHCFVEVNVLKLASPENIYRVIYEALTGHRVSWKKALQLLTERFSDGNKAPKEDERPCVLLIDELDLLVTRNQSVAAISGDARRALEICRRATEIVDYHLKLTKTSNAVSEGKELVVMAEVEAAIQEMFQAPHIQVMKNSSKMSKIFLTAMVHELYKSGMGETTFEKLAMVISCLCTSNGETFPGYDALLKVGCKLGESRIILCEAGAKHMLQKLQFNFPSDDVSFALKGSKELPWLANLLVGCGLDIGPPNGGARLVKLDLRPKPTDANLNANERAML 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35880661 35888219 + BLOR12156 Blo03g00975 58439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00975 757 Gene3D - 399 556 IPR027417 -
Blo03g00975 757 ProSiteProfiles Zinc finger PHD-type profile. 153 202 IPR019787 -
Blo03g00975 757 MobiDBLite consensus disorder prediction 1 25 - -
Blo03g00975 757 MobiDBLite consensus disorder prediction 328 368 - -
Blo03g00975 757 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 553 715 IPR020793 -
Blo03g00975 757 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 109 553 IPR020793 -
Blo03g00975 757 SMART BAH_4 187 321 IPR001025 GO:0003682
Blo03g00975 757 MobiDBLite consensus disorder prediction 343 358 - -
Blo03g00975 757 Gene3D - 95 346 IPR043151 -
Blo03g00975 757 Pfam PHD-finger 156 201 IPR019787 -
Blo03g00975 757 Pfam BAH domain 235 317 IPR001025 GO:0003682
Blo03g00975 757 MobiDBLite consensus disorder prediction 39 92 - -
Blo03g00975 757 MobiDBLite consensus disorder prediction 1 92 - -
Blo03g00975 757 ProSitePatterns Zinc finger PHD-type signature. 156 199 IPR019786 -
Blo03g00975 757 SUPERFAMILY FYVE/PHD zinc finger 146 206 IPR011011 -
Blo03g00975 757 SMART PHD_3 155 200 IPR001965 -
Blo03g00975 757 CDD AAA 424 552 - -
Blo03g00975 757 ProSiteProfiles BAH domain profile. 211 334 IPR001025 GO:0003682
Blo03g00975 757 Pfam AAA lid domain 550 577 IPR041083 -
Blo03g00975 757 Pfam ATPase family associated with various cellular activities (AAA) 448 551 IPR003959 GO:0005524|GO:0016887
Blo03g00975 757 SMART AAA_5 443 580 IPR003593 -
Blo03g00975 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 217 IPR013083 -
Blo03g00975 757 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 553 715 - -
Blo03g00975 757 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 109 553 - -
Blo03g00975 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 576 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00975 K02603 ORC1; origin recognition complex subunit 1 - rcu:8274440 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00975 Blo-Chr3:35880661 Blo06g00137 Blo-Chr6:5498926 2.26E-34 dispersed
Blo03g00974 Blo-Chr3:35863924 Blo03g00975 Blo-Chr3:35880661 4.96E-101 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00974 . 145 882 Core DNA Replication Machinery Family AT4G14700 65.6 2.2e-283 971.8
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G14700 57.4 7.9e-217 750.7
Blo03g00974 . 80 882 Core DNA Replication Machinery Family AT4G12620 62.7 2.4e-290 995.0
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G12620 58.0 1.3e-222 770.0
Blo17g00848 . 206 531 Core DNA Replication Machinery Family AT2G37560 62.7 2.8e-123 438.7
Blo01g00744 . 1 408 Core DNA Replication Machinery Family AT2G01120 54.3 5.0e-122 434.9
Blo01g00205 . 3 527 Core DNA Replication Machinery Family AT4G29910 57.7 5.4e-172 601.3
Blo10g00449 . 1 264 Core DNA Replication Machinery Family AT1G26840 69.3 1.7e-94 342.8
Blo01g00424 . 452 676 Core DNA Replication Machinery Family AT1G26840 68.4 1.0e-78 290.4
Blo15g00779 . 1 814 Core DNA Replication Machinery Family AT1G79150 56.2 1.5e-234 809.7
Blo15g00681 . 1 539 Core DNA Replication Machinery Family AT1G79150 52.1 8.0e-132 468.4
Blo03g01396 . 1 921 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1335.5
Blo14g00834 . 48 628 Core DNA Replication Machinery Family AT5G46280 78.8 2.6e-259 891.3
Blo10g00430 . 22 836 Core DNA Replication Machinery Family AT2G16440 72.0 0.0e+00 1130.5
Blo01g00598 . 1 709 Core DNA Replication Machinery Family AT2G07690 76.8 6.9e-313 1069.7
Blo08g00626 . 137 962 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1152.9
Blo06g00534 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.8 0.0e+00 1204.9
Blo14g00089 BCT 25 548 Core DNA Replication Machinery Family AT2G29680 53.7 4.7e-143 505.0
Blo13g01051 BCT 26 524 Core DNA Replication Machinery Family AT2G29680 54.0 1.8e-142 503.1
Blo14g00089 BCT 1 518 Core DNA Replication Machinery Family AT1G07270 51.4 4.3e-130 461.8
Blo13g01051 BCT 24 493 Core DNA Replication Machinery Family AT1G07270 52.8 1.1e-128 457.2
Blo15g00359 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.4e-255 878.2
Blo06g00379 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 9.2e-255 876.3
Blo09g00553 . 22 795 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1090.1
Blo04g01396 . 6 361 Core DNA Replication Machinery Family AT2G14050 73.8 1.9e-165 579.7
Blo06g00837 . 1 964 Core DNA Replication Machinery Family AT1G77320 50.5 1.6e-259 892.9
Blo05g00261 . 853 1159 Core DNA Replication Machinery Family AT4G02110 58.1 5.6e-102 369.8
Blo10g00626 . 101 299 Core DNA Replication Machinery Family AT1G80190 70.3 2.5e-79 292.0
Blo02g00887 . 38 182 Core DNA Replication Machinery Family AT3G12530 70.3 1.8e-58 222.2
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT1G19080 65.1 1.4e-60 229.6
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT3G55490 65.1 1.4e-60 229.6
Blo04g01050 . 1 1612 Core DNA Replication Machinery Family AT5G67100 56.9 0.0e+00 1704.5
Blo06g00822 . 130 744 Core DNA Replication Machinery Family AT1G67630 55.8 1.0e-195 680.2
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo05g00533 . 4 861 Core DNA Replication Machinery Family AT5G63960 75.7 0.0e+00 1338.9
Blo07g01274 . 71 477 Core DNA Replication Machinery Family AT2G42120 68.8 1.4e-170 596.3
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo14g00223 . 3 2123 Core DNA Replication Machinery Family AT1G08260 68.5 0.0e+00 2870.5
Blo14g00223 . 9 2238 Core DNA Replication Machinery Family AT2G27120 65.4 0.0e+00 2850.5
Blo15g00024 . 19 464 Core DNA Replication Machinery Family AT5G22110 69.5 1.2e-178 623.2
Blo08g00066 . 388 1290 Core DNA Replication Machinery Family AT5G22010 66.4 4.3e-304 1040.8
Blo02g01098 . 3 355 Core DNA Replication Machinery Family AT1G63160 83.9 3.1e-167 584.7
Blo11g00085 . 1 339 Core DNA Replication Machinery Family AT5G27740 79.4 2.7e-153 538.5
Blo12g01123 . 26 352 Core DNA Replication Machinery Family AT1G21690 79.6 9.7e-145 510.0
Blo18g00180 . 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 2.9e-158 555.1
Blo16g00969 . 26 615 Core DNA Replication Machinery Family AT2G06510 68.9 1.5e-247 852.4
Blo03g00091 . 34 725 Core DNA Replication Machinery Family AT2G06510 50.5 1.3e-198 689.9
Blo06g01214 . 1 625 Core DNA Replication Machinery Family AT5G08020 67.1 1.3e-243 839.3
Blo15g00339 . 1 634 Core DNA Replication Machinery Family AT5G08020 65.7 8.5e-240 826.6
Blo06g01214 . 1 619 Core DNA Replication Machinery Family AT5G61000 66.3 1.4e-240 829.3
Blo15g00339 . 1 628 Core DNA Replication Machinery Family AT5G61000 65.8 5.2e-240 827.4
Blo03g00091 . 8 853 Core DNA Replication Machinery Family AT4G19130 51.3 4.1e-226 781.6
Blo18g00682 . 169 531 Core DNA Replication Machinery Family AT5G26680 84.0 1.0e-175 613.2
Blo13g00680 . 255 540 Core DNA Replication Machinery Family AT2G25100 68.5 3.4e-111 398.3
Blo08g00019 . 2 784 Core DNA Replication Machinery Family AT1G08130 67.2 3.6e-291 997.7
Blo08g00019 . 160 784 Core DNA Replication Machinery Family AT1G49250 65.5 3.7e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002386 0 17 2 1 1 1 1 1 1 2 1 1 1 1 5 1 1 1 1 1 2 1 1 1 2 2 1 1 3 2 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12147 PF00004 AAA 4.00E-10 CL0023 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g00975 Blo_Chr03 FPKM 0.0 0.0 0.0 0.0 12.604224 0.0 13.832584 0.0 0.0 0.0