Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00980 ATGCAGTCCAAATCTGAAACCAAAGATACAGTAGAACCTCATGCACATAACATCCCACCACCCGATAGTTACTTTGAACCTTGGTGGCGTACTGTTGAATACAATTCTTTTCCCCGACCTGTGGCAGGGAACACAACCAATTCACCTTTAATTGGATGCCTAGATAGTCGATCAGAGTCCATGGATGACCAGTCAATCTCTAATGATGAGCAAAATGAGGACAATGATACTGAAAAACAATCACATAGACTGATTGGATCTCCACGTGCTGGGATCACGCTTTTATTTATATCAGGTGGAAAAGGTCAGCAAGATGCTCCAAGTGGGTCAAATGGGGGATCCTCAGGGACTACAATGCATGGTGCATATATGGATCAACCTCCATTGCTTGAACTAATTGGACATTCTTCTTTTGCATCTTTTGTATGGGTATGTGCAAAAAATTCTTATCGGGATCCATATTATGGAAGAGTGATAACTGCTTATGGGCATCATCAGCCTTTGGGTTATTATCCTTTTCTGGGAATGCCGCATGCTAGAATGCCTTTACCTCATGACATGATACAGGAGCCAGTTTTTGTGAATGCTAAGCAATACCAAGGGATTTTGAGGAGAAGACAAGCACGTGCTAAAGCAGAAGTTGAAAAGAAGCTGATAAAAAATAAAAAGCCATATCTTCATGAATCTCGTCATAAGCATGCAATGAGAAGAGAAAGAAGCATGGGAGGACGTTTTGCCAAGAAAATGGAGGTCGATTCTGTCAACTGCATTAGTAAAGAAACGGCATCAGATTCTGTTCCATCCATGTCATCGCAGTCAGCTTGTACATCTGCTTCTGAACTCTTGGCTACAGATGCGAGTGAAACACAGACTTCCATCAATGGTCAAAAAGCAAGAAGCTGGCCCCACAAGATTATGTGA 921 42.02 MQSKSETKDTVEPHAHNIPPPDSYFEPWWRTVEYNSFPRPVAGNTTNSPLIGCLDSRSESMDDQSISNDEQNEDNDTEKQSHRLIGSPRAGITLLFISGGKGQQDAPSGSNGGSSGTTMHGAYMDQPPLLELIGHSSFASFVWVCAKNSYRDPYYGRVITAYGHHQPLGYYPFLGMPHARMPLPHDMIQEPVFVNAKQYQGILRRRQARAKAEVEKKLIKNKKPYLHESRHKHAMRRERSMGGRFAKKMEVDSVNCISKETASDSVPSMSSQSACTSASELLATDASETQTSINGQKARSWPHKIM 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 35958672 35961207 - BLOR12161 Blo03g00980 58444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00980 306 MobiDBLite consensus disorder prediction 1 25 - -
Blo03g00980 306 MobiDBLite consensus disorder prediction 1 15 - -
Blo03g00980 306 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 298 IPR001289 GO:0003700|GO:0006355
Blo03g00980 306 MobiDBLite consensus disorder prediction 38 61 - -
Blo03g00980 306 MobiDBLite consensus disorder prediction 99 120 - -
Blo03g00980 306 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 298 - -
Blo03g00980 306 Gene3D - 188 250 - -
Blo03g00980 306 MobiDBLite consensus disorder prediction 286 306 - -
Blo03g00980 306 PRINTS CCAAT-binding transcription factor subunit B signature 222 245 IPR001289 GO:0003700|GO:0006355
Blo03g00980 306 PRINTS CCAAT-binding transcription factor subunit B signature 191 213 IPR001289 GO:0003700|GO:0006355
Blo03g00980 306 SMART cbf3 187 248 IPR001289 GO:0003700|GO:0006355
Blo03g00980 306 ProSiteProfiles NF-YA/HAP2 family profile. 188 248 IPR001289 GO:0003700|GO:0006355
Blo03g00980 306 MobiDBLite consensus disorder prediction 103 120 - -
Blo03g00980 306 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 190 245 IPR001289 GO:0003700|GO:0006355
Blo03g00980 306 ProSitePatterns NF-YA/HAP2 subunit signature. 193 213 IPR018362 GO:0003677|GO:0016602
Blo03g00980 306 MobiDBLite consensus disorder prediction 38 84 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g00980 Blo08g00103 CCT
Blo03g00980 Blo14g00284 CCT
Blo03g01379 Blo03g00980 ECH
Blo03g00980 Blo08g00103 ECH
Blo03g00980 Blo14g00284 ECH
Blo03g00980 Blo03g01379 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00980 Blo-Chr3:35958672 Blo14g00284 Blo-Chr14:2845175 3.38E-77 dispersed
Blo03g00980 Blo-Chr3:35958672 Blo03g01379 Blo-Chr3:40225072 2.94E-129 wgd
Blo03g00980 Blo-Chr3:35958672 Blo08g00103 Blo-Chr8:1083191 1.93E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12148 PF02045 CBFB_NFYA 1.90E-25 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00980 K08064 - zju:107412610 290.812