Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g00992 ATGGGAGCTGTTGGAAGGAACCGAGAATGCGAAGGACTGCGATCGGCGATTCAAAACTGCGAAGGTGCGTGCGACGATGAATCTATGCCGACGACGACTGCGAAGTTGCGAGATGTTGTGCAACTACGATTGCAAGACTGTAGGAAAACAGCAGGGGAGGAACCGAGAACCGCCGGTTCTGGACCCGGAACCGAGGTCAGTTCCGGGTTCGGTTCCCGTGCCCATCTGTTCCGGGTTCGGTACCGACTTCTCGGAACCGAGAACCGACTAATCAATTGGAATTTGATAACTAACCAAGGAGGAAATGAAGTTCCTAAGGTGGCTGATTTTTTTGGAGTTACCAAATCACAAAGTCAATCAGATCTATCTGCTTTTAATGGGACGCAGTCGAATGATTCAGAGTATTTAAATTCAAACAACAGCATAGTTTCTCTTCAAACCACCATGGCTGATTTCCAAGAAAGCTCTAACAACTTGCAGTCCTTGACTTTGTCGATGGGAAGTGGAAACAAGGCTTCGACAACATGTGAAAATAGTGGTGAAAACAGCATTCATAGTACTGTCGAGGCAACTCCAAGAAGAACTTTGGAGACTTTTGGGCAAAGAACTTCAATTTATCGTGGGGTTACAAGGCATCGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAACACTTGCAGAAGAGAAGGACAATCAAGAAAGGGTCGTCAAGGTGGGTATGACAAAGAAGATAAAGCAGCGAGGGCTTATGATCTTGCAGCATTGAAATATTGGGGAACATCAACCACTACGAACTTTCCTGTCATTTTCTTCACCTTTCAACATACAAGAAAAATTTCTCATTTTTTTCTGAATGATTTGGATGTGATTCTGTTCTTGCAGGAAAGCGATTATGAAAAAGAATTGGAGGAGATGAAGCACATGACAAGACAAGAATTCGTGGCCTCCATTAGAAGGAAGAGTAGTGGGTTTTCTAGAGGTGCATCCATGTATCGTGGAGTTACAAGGCAAAGCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTACCTTCTCTAAACGCTCTCTCACTCAAGCATGTTACCCTATGTTTCACAGGCATCATCAACATGGAAGATGGCAGGCAAGAATCGGAAGAGTGACAGGAAATAAAGATCTTTACTTGGGAACATTCAGTACCGAGGAAGAAGCCGCGGAAGCATACGACATTGCAGCCATAAAATTCAGAGGCCAAAATGCAGTGACAAACTTCGACATGAATCGATACGACGTAAAAACCATTTTAGAAAGCAATTCTCTACCCATCGGAGGAGGAGCAGCCAAAAGATTGAAGGAAGCTCAGGCCTTTGAATCGGCGAGGAAACGTGAAGAAATGACAGCTCTAGGTTCTGGCTTTCACTATGGTGCCTCTAGTGAATCTTCTGCTAGGGTTCCTCTTCAATCTTTTGAGCAATCTTTTCCGTTGATTTCTCTGCAAAATCGAGAAATCTCTCATTTTTCTCAAGACCCATCATTGTTTCAGCAGAGTTATCTTCATCAACTTCACTTGCATCATCAGAATTCTGGTTTTCAGGCTAACCCATTTAGCCAAAGCCCACAATTCTTCAACGGGCATGATTCTGAATTATCTTTGTCTTCTGTAATCATGGATAATAACAATGGAGGAGGACTATATAACCTAGGAAATGGGGTTTCCATGACGTCGGTTTCTTCCTTCAATGGTGGTGGGGTGAGATCTATAGAAGAACTGGGTCAAGTGAAGGTGGATTATGATATGGTTTGTGGAGGATATGGAGGTTGGTCCACTGATCATCAGACTAACAACGGAGTTTTCAGCATGTGGAATGAAAGTTGA 1854 43.74 MGAVGRNRECEGLRSAIQNCEGACDDESMPTTTAKLRDVVQLRLQDCRKTAGEEPRTAGSGPGTEVSSGFGSRAHLFRVRYRLLGTENRLINWNLITNQGGNEVPKVADFFGVTKSQSQSDLSAFNGTQSNDSEYLNSNNSIVSLQTTMADFQESSNNLQSLTLSMGSGNKASTTCENSGENSIHSTVEATPRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGTSTTTNFPVIFFTFQHTRKISHFFLNDLDVILFLQESDYEKELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRQSLPLSLSLSLSTFSKRSLTQACYPMFHRHHQHGRWQARIGRVTGNKDLYLGTFSTEEEAAEAYDIAAIKFRGQNAVTNFDMNRYDVKTILESNSLPIGGGAAKRLKEAQAFESARKREEMTALGSGFHYGASSESSARVPLQSFEQSFPLISLQNREISHFSQDPSLFQQSYLHQLHLHHQNSGFQANPFSQSPQFFNGHDSELSLSSVIMDNNNGGGLYNLGNGVSMTSVSSFNGGGVRSIEELGQVKVDYDMVCGGYGGWSTDHQTNNGVFSMWNES 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36199389 36210917 + BLOR12173 Blo03g00992 58456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g00992 617 Pfam AP2 domain 205 260 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 Pfam AP2 domain 367 410 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 361 615 - -
Blo03g00992 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 297 338 - -
Blo03g00992 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 90 269 - -
Blo03g00992 617 ProSiteProfiles AP2/ERF domain profile. 205 268 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 ProSiteProfiles AP2/ERF domain profile. 331 418 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 CDD AP2 366 418 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 CDD AP2 204 269 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 361 615 - -
Blo03g00992 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 297 338 - -
Blo03g00992 617 SUPERFAMILY DNA-binding domain 204 269 IPR016177 GO:0003677
Blo03g00992 617 SMART rav1_2 205 274 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 SMART rav1_2 366 424 IPR001471 GO:0003700|GO:0006355
Blo03g00992 617 Gene3D AP2/ERF domain 205 270 IPR036955 GO:0003700|GO:0006355
Blo03g00992 617 Gene3D AP2/ERF domain 365 420 IPR036955 GO:0003700|GO:0006355
Blo03g00992 617 SUPERFAMILY DNA-binding domain 366 419 IPR016177 GO:0003677
Blo03g00992 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 90 269 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g00992 Blo03g01367 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00992 Blo-Chr3:36199389 Blo11g00401 Blo-Chr11:3476505 1.31E-109 dispersed
Blo16g01066 Blo-Chr16:39194519 Blo03g00992 Blo-Chr3:36199389 5.47E-08 dispersed
Blo03g00992 Blo-Chr3:36199389 Blo03g01367 Blo-Chr3:40121441 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12149 PF00847 AP2 1.70E-08 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g00992 K09285 - pvy:116115844 603.979