Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01003 ATGGGCCATGAAGAAGAAGAAGAAGAAGAAGATAAGGAAGCTTCTGCAATGGCGATTCCAGATTACAAAACGAGCCGGAAAGTCGGAGAGTTTTTACGTTCTGAAAATGCGTGTTTTGCTACTCCGCCGGGCAAACGGCCCCGACACGAAAATTGCGAACCGTTCGGGAAATTCAAAGGCGTCGTTATGCAGCAAAACGGGCATTGGGGGGCACAGATTTATGCGAACCATCAGAGAATTTGGCTCGGAACGTTTAAGTCCGAGAAAGAGGCGGCGATGGCCTACGATAGCGCAGCCATAAAGCTCCGAAACGGAATCGACTCCCACCGGAATTTTCCTTGGAACGATTACAGCATAAAGGAGCCGAGTTTTCAAAACCAATTCAGCAAAGACGACGTGCTGAAAATGATCAGAGATGGCTCTTATTCGTCAAAGTTTGATGCATTTCTGAAGGAGGAGCCTCGAAGTGAAGAGATTGGATTGGGTTCCAAGCAAAGATCAGTGAATTTACGCGACCGCAAATGCTCAAAAATCCAACTTTTTCAGAAGGAGTTGACGCCGAGTGACGTTGGCAAGCTTAACAGGCTCGTAATTCCGAAGAAAAACGCGACGAAATATTTCCCGTTCATCAGCGAAAACGACGTCGAGCTAATTTTCTACGATAAGTCGATGAAGATCTGGAAATTTAGATACTGTTATTGGAAAAGCAGCCAGAGCTTCGTGTTCACAAGGGGCTGGAACAGGTTCGTGAAGGAGAAGAAGCTCAAGGAGAATGACGTTATTTCATTTTATTCGTGCGAAGGAGGCGAAAACAGTGAAGAAAATGGCGTCTCCTTCTGCTTGATCGACGTGGTTTACAGCAAAGAGAGAGAAACTGGAGCTGAAACCTGTCTGGACGGCGAGAAAATGTGCAGCGAGAAGAAGAACGTGGAGTTGGAGCTGCAATTGGGGAATTTTCTCAGATTCAAAGTGGATGGGAAAGAGAAGGAAAATGTTTTCAATGGGATGTACTCCATTCCAGCTTGCGTTGAAGAGAAGGGCTTGAGGCTATTTGGAGTGCAAATCACTTGA 1071 46.03 MGHEEEEEEEDKEASAMAIPDYKTSRKVGEFLRSENACFATPPGKRPRHENCEPFGKFKGVVMQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRNGIDSHRNFPWNDYSIKEPSFQNQFSKDDVLKMIRDGSYSSKFDAFLKEEPRSEEIGLGSKQRSVNLRDRKCSKIQLFQKELTPSDVGKLNRLVIPKKNATKYFPFISENDVELIFYDKSMKIWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKENDVISFYSCEGGENSEENGVSFCLIDVVYSKERETGAETCLDGEKMCSEKKNVELELQLGNFLRFKVDGKEKENVFNGMYSIPACVEEKGLRLFGVQIT 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36316066 36317136 - BLOR12184 Blo03g01003 58467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01003 356 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 39 356 - -
Blo03g01003 356 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 356 IPR044800 GO:0003700
Blo03g01003 356 CDD B3_DNA 180 264 IPR003340 GO:0003677
Blo03g01003 356 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Blo03g01003 356 SUPERFAMILY DNA-binding pseudobarrel domain 176 269 IPR015300 -
Blo03g01003 356 ProSiteProfiles AP2/ERF domain profile. 57 113 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Gene3D - 175 294 IPR015300 -
Blo03g01003 356 SMART rav1_2 57 119 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Pfam AP2 domain 57 104 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Pfam B3 DNA binding domain 181 266 IPR003340 GO:0003677
Blo03g01003 356 SMART B3_2 181 274 IPR003340 GO:0003677
Blo03g01003 356 MobiDBLite consensus disorder prediction 1 21 - -
Blo03g01003 356 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Blo03g01003 356 ProSiteProfiles B3 DNA-binding domain profile. 181 285 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01003 K09287 RAV; RAV-like factor - qsu:111998385 353.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01003 Blo-Chr3:36316066 Blo06g00971 Blo-Chr6:32997555 1.38E-57 dispersed
Blo03g01003 Blo-Chr3:36316066 Blo19g00130 Blo-Chr19:3745824 4.84E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo09g00482 . 91 207 RAV Transcription Factor Family AT2G36080 73.7 1.3e-47 186.4
Blo12g00198 BCT 108 230 RAV Transcription Factor Family AT2G36080 64.3 3.0e-41 165.2
Blo03g00788 BCT 86 200 RAV Transcription Factor Family AT2G36080 66.9 1.2e-40 163.3
Blo19g00130 BCT 87 199 RAV Transcription Factor Family AT2G36080 67.2 7.5e-40 160.6
Blo01g00258 BCT 109 231 RAV Transcription Factor Family AT2G36080 62.7 4.1e-38 154.8
Blo12g00198 BCT 82 338 RAV Transcription Factor Family AT2G46870 51.7 6.2e-61 231.5
Blo01g00258 BCT 103 339 RAV Transcription Factor Family AT2G46870 51.8 8.4e-58 221.1
Blo19g00130 BCT 87 336 RAV Transcription Factor Family AT2G46870 51.7 7.1e-57 218.0
Blo11g00830 BCT 187 299 RAV Transcription Factor Family AT2G46870 64.7 1.3e-37 154.1
Blo06g00971 BCT 191 299 RAV Transcription Factor Family AT2G46870 67.9 1.3e-37 154.1
Blo09g00482 . 92 233 RAV Transcription Factor Family AT3G11580 62.7 8.4e-47 184.1
Blo12g00198 BCT 107 225 RAV Transcription Factor Family AT3G11580 61.5 2.4e-41 166.0
Blo03g00788 BCT 86 212 RAV Transcription Factor Family AT3G11580 59.0 1.7e-39 159.8
Blo19g00130 BCT 87 204 RAV Transcription Factor Family AT3G11580 59.7 1.9e-38 156.4
Blo01g00258 BCT 108 221 RAV Transcription Factor Family AT3G11580 60.0 2.7e-37 152.5
Blo12g00198 BCT 108 340 RAV Transcription Factor Family AT3G61970 50.8 2.7e-53 206.1
Blo19g00130 BCT 82 215 RAV Transcription Factor Family AT3G61970 72.5 7.8e-53 204.5
Blo06g00971 BCT 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.9e-38 156.8
Blo11g00830 BCT 189 299 RAV Transcription Factor Family AT3G61970 66.4 2.4e-38 156.4
Blo09g00482 . 86 299 RAV Transcription Factor Family AT5G06250 50.9 2.9e-51 199.1
Blo12g00198 BCT 109 217 RAV Transcription Factor Family AT5G06250 65.5 1.8e-40 163.3
Blo19g00130 BCT 88 195 RAV Transcription Factor Family AT5G06250 66.9 4.0e-40 162.2
Blo03g00788 BCT 87 199 RAV Transcription Factor Family AT5G06250 64.2 2.0e-39 159.8
Blo01g00258 BCT 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.3e-38 157.1
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G50680 60.7 5.7e-76 281.6
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G51120 59.5 3.5e-76 282.3
Blo06g00971 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.0 2.2e-112 402.5
Blo11g00830 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.9 1.6e-110 396.4
Blo19g00130 BCT 72 194 RAV Transcription Factor Family AT1G13260 65.3 2.1e-38 156.8
Blo03g00788 BCT 88 202 RAV Transcription Factor Family AT1G13260 69.0 3.7e-38 156.0
Blo09g00482 . 93 204 RAV Transcription Factor Family AT1G13260 66.1 5.3e-37 152.1
Blo01g00258 BCT 111 231 RAV Transcription Factor Family AT1G13260 63.9 9.0e-37 151.4
Blo06g00971 BCT 26 325 RAV Transcription Factor Family AT3G25730 66.4 1.3e-101 366.7
Blo11g00830 BCT 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.1e-100 363.6
Blo11g00830 BCT 1 371 RAV Transcription Factor Family AT1G68840 62.8 2.2e-115 412.5
Blo06g00971 BCT 1 371 RAV Transcription Factor Family AT1G68840 61.5 3.2e-114 408.7
Blo03g00788 BCT 59 192 RAV Transcription Factor Family AT1G68840 61.0 3.4e-39 159.5
Blo19g00130 BCT 88 194 RAV Transcription Factor Family AT1G68840 70.6 1.3e-38 157.5
Blo09g00482 . 92 200 RAV Transcription Factor Family AT1G68840 67.0 7.1e-37 151.8
Blo06g00971 BCT 26 325 RAV Transcription Factor Family AT3G25730 66.4 1.3e-101 366.7
Blo11g00830 BCT 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.1e-100 363.6
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G51120 59.5 3.5e-76 282.3
Blo09g00482 . 92 233 RAV Transcription Factor Family AT3G11580 62.7 8.4e-47 184.1
Blo12g00198 BCT 107 225 RAV Transcription Factor Family AT3G11580 61.5 2.4e-41 166.0
Blo03g00788 BCT 86 212 RAV Transcription Factor Family AT3G11580 59.0 1.7e-39 159.8
Blo19g00130 BCT 87 204 RAV Transcription Factor Family AT3G11580 59.7 1.9e-38 156.4
Blo01g00258 BCT 108 221 RAV Transcription Factor Family AT3G11580 60.0 2.7e-37 152.5
Blo09g00482 . 91 207 RAV Transcription Factor Family AT2G36080 73.7 1.3e-47 186.4
Blo12g00198 BCT 108 230 RAV Transcription Factor Family AT2G36080 64.3 3.0e-41 165.2
Blo03g00788 BCT 86 200 RAV Transcription Factor Family AT2G36080 66.9 1.2e-40 163.3
Blo19g00130 BCT 87 199 RAV Transcription Factor Family AT2G36080 67.2 7.5e-40 160.6
Blo01g00258 BCT 109 231 RAV Transcription Factor Family AT2G36080 62.7 4.1e-38 154.8
Blo09g00482 . 86 299 RAV Transcription Factor Family AT5G06250 50.9 2.9e-51 199.1
Blo12g00198 BCT 109 217 RAV Transcription Factor Family AT5G06250 65.5 1.8e-40 163.3
Blo19g00130 BCT 88 195 RAV Transcription Factor Family AT5G06250 66.9 4.0e-40 162.2
Blo03g00788 BCT 87 199 RAV Transcription Factor Family AT5G06250 64.2 2.0e-39 159.8
Blo01g00258 BCT 110 218 RAV Transcription Factor Family AT5G06250 66.4 1.3e-38 157.1
Blo12g00198 BCT 82 338 RAV Transcription Factor Family AT2G46870 51.7 6.2e-61 231.5
Blo01g00258 BCT 103 339 RAV Transcription Factor Family AT2G46870 51.8 8.4e-58 221.1
Blo19g00130 BCT 87 336 RAV Transcription Factor Family AT2G46870 51.7 7.1e-57 218.0
Blo11g00830 BCT 187 299 RAV Transcription Factor Family AT2G46870 64.7 1.3e-37 154.1
Blo06g00971 BCT 191 299 RAV Transcription Factor Family AT2G46870 67.9 1.3e-37 154.1
Blo03g01003 . 57 284 RAV Transcription Factor Family AT1G50680 60.7 5.7e-76 281.6
Blo12g00198 BCT 108 340 RAV Transcription Factor Family AT3G61970 50.8 2.7e-53 206.1
Blo19g00130 BCT 82 215 RAV Transcription Factor Family AT3G61970 72.5 7.8e-53 204.5
Blo06g00971 BCT 187 299 RAV Transcription Factor Family AT3G61970 67.0 1.9e-38 156.8
Blo11g00830 BCT 189 299 RAV Transcription Factor Family AT3G61970 66.4 2.4e-38 156.4
Blo06g00971 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.0 2.2e-112 402.5
Blo11g00830 BCT 1 370 RAV Transcription Factor Family AT1G13260 62.9 1.6e-110 396.4
Blo19g00130 BCT 72 194 RAV Transcription Factor Family AT1G13260 65.3 2.1e-38 156.8
Blo03g00788 BCT 88 202 RAV Transcription Factor Family AT1G13260 69.0 3.7e-38 156.0
Blo09g00482 . 93 204 RAV Transcription Factor Family AT1G13260 66.1 5.3e-37 152.1
Blo01g00258 BCT 111 231 RAV Transcription Factor Family AT1G13260 63.9 9.0e-37 151.4
Blo11g00830 BCT 1 371 RAV Transcription Factor Family AT1G68840 62.8 2.2e-115 412.5
Blo06g00971 BCT 1 371 RAV Transcription Factor Family AT1G68840 61.5 3.2e-114 408.7
Blo03g00788 BCT 59 192 RAV Transcription Factor Family AT1G68840 61.0 3.4e-39 159.5
Blo19g00130 BCT 88 194 RAV Transcription Factor Family AT1G68840 70.6 1.3e-38 157.5
Blo09g00482 . 92 200 RAV Transcription Factor Family AT1G68840 67.0 7.1e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12152 PF02362 B3 4.40E-26 CL0405 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01003 Blo_Chr03 FPKM 11.880597 13.295996 5.245099 6.969226 8.318026 5.377551 7.758101 9.954023 9.911384 11.766416