Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01003 ATGGGCCATGAAGAAGAAGAAGAAGAAGAAGATAAGGAAGCTTCTGCAATGGCGATTCCAGATTACAAAACGAGCCGGAAAGTCGGAGAGTTTTTACGTTCTGAAAATGCGTGTTTTGCTACTCCGCCGGGCAAACGGCCCCGACACGAAAATTGCGAACCGTTCGGGAAATTCAAAGGCGTCGTTATGCAGCAAAACGGGCATTGGGGGGCACAGATTTATGCGAACCATCAGAGAATTTGGCTCGGAACGTTTAAGTCCGAGAAAGAGGCGGCGATGGCCTACGATAGCGCAGCCATAAAGCTCCGAAACGGAATCGACTCCCACCGGAATTTTCCTTGGAACGATTACAGCATAAAGGAGCCGAGTTTTCAAAACCAATTCAGCAAAGACGACGTGCTGAAAATGATCAGAGATGGCTCTTATTCGTCAAAGTTTGATGCATTTCTGAAGGAGGAGCCTCGAAGTGAAGAGATTGGATTGGGTTCCAAGCAAAGATCAGTGAATTTACGCGACCGCAAATGCTCAAAAATCCAACTTTTTCAGAAGGAGTTGACGCCGAGTGACGTTGGCAAGCTTAACAGGCTCGTAATTCCGAAGAAAAACGCGACGAAATATTTCCCGTTCATCAGCGAAAACGACGTCGAGCTAATTTTCTACGATAAGTCGATGAAGATCTGGAAATTTAGATACTGTTATTGGAAAAGCAGCCAGAGCTTCGTGTTCACAAGGGGCTGGAACAGGTTCGTGAAGGAGAAGAAGCTCAAGGAGAATGACGTTATTTCATTTTATTCGTGCGAAGGAGGCGAAAACAGTGAAGAAAATGGCGTCTCCTTCTGCTTGATCGACGTGGTTTACAGCAAAGAGAGAGAAACTGGAGCTGAAACCTGTCTGGACGGCGAGAAAATGTGCAGCGAGAAGAAGAACGTGGAGTTGGAGCTGCAATTGGGGAATTTTCTCAGATTCAAAGTGGATGGGAAAGAGAAGGAAAATGTTTTCAATGGGATGTACTCCATTCCAGCTTGCGTTGAAGAGAAGGGCTTGAGGCTATTTGGAGTGCAAATCACTTGA 1071 46.03 MGHEEEEEEEDKEASAMAIPDYKTSRKVGEFLRSENACFATPPGKRPRHENCEPFGKFKGVVMQQNGHWGAQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRNGIDSHRNFPWNDYSIKEPSFQNQFSKDDVLKMIRDGSYSSKFDAFLKEEPRSEEIGLGSKQRSVNLRDRKCSKIQLFQKELTPSDVGKLNRLVIPKKNATKYFPFISENDVELIFYDKSMKIWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKENDVISFYSCEGGENSEENGVSFCLIDVVYSKERETGAETCLDGEKMCSEKKNVELELQLGNFLRFKVDGKEKENVFNGMYSIPACVEEKGLRLFGVQIT 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36316066 36317136 - BLOR12184 Blo03g01003 58467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01003 356 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 39 356 - -
Blo03g01003 356 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 356 IPR044800 GO:0003700
Blo03g01003 356 CDD B3_DNA 180 264 IPR003340 GO:0003677
Blo03g01003 356 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Blo03g01003 356 SUPERFAMILY DNA-binding pseudobarrel domain 176 269 IPR015300 -
Blo03g01003 356 ProSiteProfiles AP2/ERF domain profile. 57 113 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Gene3D - 175 294 IPR015300 -
Blo03g01003 356 SMART rav1_2 57 119 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Pfam AP2 domain 57 104 IPR001471 GO:0003700|GO:0006355
Blo03g01003 356 Pfam B3 DNA binding domain 181 266 IPR003340 GO:0003677
Blo03g01003 356 SMART B3_2 181 274 IPR003340 GO:0003677
Blo03g01003 356 MobiDBLite consensus disorder prediction 1 21 - -
Blo03g01003 356 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Blo03g01003 356 ProSiteProfiles B3 DNA-binding domain profile. 181 285 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01003 Blo-Chr3:36316066 Blo06g00971 Blo-Chr6:32997555 1.38E-57 dispersed
Blo03g01003 Blo-Chr3:36316066 Blo19g00130 Blo-Chr19:3745824 4.84E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12152 PF02362 B3 4.40E-26 CL0405 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01003 K09287 - qsu:111998385 353.214