Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01011 ATGGCGTCAAAGTCTGCAACCTTTCCTTTTCTCTTCACTTTAGCTCTACTTTTTCTAGGGTTTTCAACCTCCGATCTAGATAAAGACAAAGCAGAATGCGCCGATAAACTCGTGGGTTTGGCTACTTGTCTTCCTTACGTTAGCGGCGAAGCGAAAACGCCGACTTTGGATTGCTGTACAGGCCTCAAAAGTGTCCTCGATAACAGCAAAAGATGTCTGTGTGTTCTTCTGAAAGATCGAGATGATCCTAGTCTTGGGTTCAAATTCAATTCCACTCTTGCTTTGGCCCTTCCTTCTACTTGTCGCGTTGCTAGTAACCTCACAGAATGTATTGATCTCCTGCATCTGCCACAAAATTCCTCAGAGGCCAAGTTCTTCGAAGGAACATCACACAGCACGGGAGGGAGCAGCACTGCAACAAGCAGTGGTAAAAACATTATATTTTTTCAACCTACGAATCCATGGCTCTGGTCAGATTCTCCATTTTCTTCTTCTTCTGCTTCGAACTCGTCGCCTCTTTGGCTCTTTCAGGCACCAATAATTGCACTGTTTACGAGATTCTCCCCTAATTCGGTCTCCCAAGTGGCCATTTTAACGGACTCAGTCTCCATCTACGACCTTTCTTCCGATAGTCGATTTGTCGTTGTTTTGCCCCAGCCTTGCTACGTGCAGTTCGACCAAGGAGCGGATCGCCAATTATGGTTTGCATCCAAACAGAGCCTTTCGTACTTGGATGGCAGTCTACCCGGCGACTATGGATTTGATCCGTTGGGACTCTCAGATCCAGAAGGAACCGGAGGATTCATCGAACCAAAATGGCTAGCCTACGGAGAGATAATCAACGGACGATTCGCCATGCTAGGAGCATTCGGAGCCATAGCACCCGAAATTTTCGGAAAACTCGGCCTCGTCCCACCGGAAACCGCTCTTCCGTGGTTCAAAACCGGCGTGATCCCCCCGGCCGGAACCTACAACTACTGGGCGGATTCCTACACGCTCTTTGTGTTTGAAATGGCGCTAATGGGATTCGCAGAGCACAGAAGATTCCAAGACTGGGCAAACCCAGGATCGATGGGAAAACAGTACTTCCTAGGGTTGGAAAAGTTCTTGGGAGGATCGGGAGACCCAGCGTACCCAGGGGGGCCGCTGTTCAACCCTCTAGGACTTGGGAAGGACGAGAAATCGATGAAGGAGATGAAACTGAAGGAGGTGAAGAACGGGAGACTGGCAATGCTGGCGATCTTGGGTTACTTCGTCCAGGCATTAGTGACGGGAGTCGGACCATTCCAGAACCTTCTGGACCATTTGGCTGACCCTGTGAACAACAATATCCTGACCAGTCTCAAGTTCCATTAG 1356 49.19 MASKSATFPFLFTLALLFLGFSTSDLDKDKAECADKLVGLATCLPYVSGEAKTPTLDCCTGLKSVLDNSKRCLCVLLKDRDDPSLGFKFNSTLALALPSTCRVASNLTECIDLLHLPQNSSEAKFFEGTSHSTGGSSTATSSGKNIIFFQPTNPWLWSDSPFSSSSASNSSPLWLFQAPIIALFTRFSPNSVSQVAILTDSVSIYDLSSDSRFVVVLPQPCYVQFDQGADRQLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRFAMLGAFGAIAPEIFGKLGLVPPETALPWFKTGVIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGLGKDEKSMKEMKLKEVKNGRLAMLAILGYFVQALVTGVGPFQNLLDHLADPVNNNILTSLKFH 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36411646 36417046 + BLOR12192 Blo03g01011 58475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01011 451 CDD AAI_LTSS 40 103 - -
Blo03g01011 451 Pfam Chlorophyll A-B binding protein 242 421 IPR022796 -
Blo03g01011 451 Gene3D - 30 110 IPR036312 -
Blo03g01011 451 Pfam Probable lipid transfer 27 110 IPR016140 -
Blo03g01011 451 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 208 450 IPR001344 GO:0009765|GO:0016020
Blo03g01011 451 SUPERFAMILY Chlorophyll a-b binding protein 230 447 - -
Blo03g01011 451 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 8, CHLOROPLASTIC 208 450 - -
Blo03g01011 451 Gene3D Chlorophyll a/b binding protein domain 232 450 - -
Blo03g01011 451 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 32 110 IPR036312 -
Blo03g01011 451 SMART aai_6 33 110 IPR016140 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01011 Blo-Chr3:36411646 Blo09g00381 Blo-Chr9:14647042 1.21E-47 dispersed
Blo11g00990 Blo-Chr11:24618330 Blo03g01011 Blo-Chr3:36411646 1.93E-10 dispersed
Blo15g00782 Blo-Chr15:26690039 Blo03g01011 Blo-Chr3:36411646 5.64E-09 dispersed
Blo06g00629 Blo-Chr6:29264864 Blo03g01011 Blo-Chr3:36411646 7.82E-36 transposed
Blo03g01011 Blo-Chr3:36411646 Blo03g01344 Blo-Chr3:39802686 2.94E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01011 K08909 - dct:110110126 442.58