Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01075 ATGTCTCACTACCCTTTTCATCTTTCTGCAGAATTCTCCTGCTTTGTTCGAGTTTTGTTTGATTCTATGGAGGTTGTGAGAGGGAAGAGGACTAAAAGGCTGAGCCTTTCGAGCTCTTTTGGCTATGGCGGTGCTTCGGCTTTAACGTCTAGCTCGGGTAGTGAGGACTGCGATGGAGCAAAAGAAGATTTTCGTTTGGTTTCTTCTGCAACTGTTTCTGGGGAGGAAGAAGAAGACATGGCTAATTGCTTGATTCTCTTAGCTCAAGGCCATGGCTCAACCCGACTGGACAGACTCGAGGATAAGTCTGGGTTTTATGTCTACGAATGTAAGACGTGTAATAGAACTTTCCCTTCTTTTCAGTCTCTCGGTGGCCATCGAGCCAGTCACAAAAGGCCGAAGCAAACCGCCATGGGAGAGGAGAAAAAAGCTTCTACTTATACCCTCGAGTCTCTACAATTCAACAAGAACAAGAACAGCTATACCCCTCTTCCTACTTCAAAGGGTTTGCCGATTAACAAAGGTAAAATTCACGAGTGCTCGATTTGTGGGTTAGAGTTCACTTCCGGCCAAGCGCTCGGCGGCCATATGAGGAGGCACAGAGCTATTTCGGCCGGAGAAAGCCGTACAAACGTCGGTCAAGCAACAGTAGAGATGGAAATAAAGCAAAGAAATCTGTTACAGTTAGACCTGAACCTCCCGGCGCCGGAGGAAGATCTCCGGGAGTCCAAGTTTCAATTTGTTCGAACTCAACAACCACTTGTTTTCTCCACCCCTGCTCTTGTCGATTGCCATTACTGA 801 47.07 MSHYPFHLSAEFSCFVRVLFDSMEVVRGKRTKRLSLSSSFGYGGASALTSSSGSEDCDGAKEDFRLVSSATVSGEEEEDMANCLILLAQGHGSTRLDRLEDKSGFYVYECKTCNRTFPSFQSLGGHRASHKRPKQTAMGEEKKASTYTLESLQFNKNKNSYTPLPTSKGLPINKGKIHECSICGLEFTSGQALGGHMRRHRAISAGESRTNVGQATVEMEIKQRNLLQLDLNLPAPEEDLRESKFQFVRTQQPLVFSTPALVDCHY 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37137528 37138328 - BLOR12256 Blo03g01075 58539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01075 266 SUPERFAMILY beta-beta-alpha zinc fingers 107 200 IPR036236 -
Blo03g01075 266 PANTHER ZINC FINGER PROTEIN ZAT5 21 92 - -
Blo03g01075 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Blo03g01075 266 PANTHER ZINC FINGER PROTEIN ZAT5 100 266 - -
Blo03g01075 266 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 100 266 - -
Blo03g01075 266 Pfam C2H2-type zinc finger 178 202 - -
Blo03g01075 266 Pfam C2H2-type zinc finger 107 133 - -
Blo03g01075 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Blo03g01075 266 Gene3D Classic Zinc Finger 94 163 - -
Blo03g01075 266 Gene3D Classic Zinc Finger 170 228 - -
Blo03g01075 266 MobiDBLite consensus disorder prediction 123 142 - -
Blo03g01075 266 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 21 92 - -
Blo03g01075 266 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Blo03g01075 266 SMART c2h2final6 178 200 IPR013087 -
Blo03g01075 266 SMART c2h2final6 108 130 IPR013087 -
Blo03g01075 266 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g01075 Blo14g00204 CCT
Blo03g01075 Blo08g00022 CCT
Blo03g01075 Blo14g00204 ECH
Blo03g01075 Blo08g00022 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01075 Blo-Chr3:37137528 Blo12g00486 Blo-Chr12:22617413 2.87E-60 dispersed
Blo01g01186 Blo-Chr1:43841428 Blo03g01075 Blo-Chr3:37137528 3.40E-59 wgd
Blo14g00204 Blo-Chr14:1732744 Blo03g01075 Blo-Chr3:37137528 8.88E-68 wgd
Blo03g01075 Blo-Chr3:37137528 Blo08g00022 Blo-Chr8:206132 5.93E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12156 PF13912 zf-C2H2_6 7.50E-12 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01075 - - hbr:110660529 235.728