Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01102 ATGGCTGGTACTATAGTCAATAGGAAAAAAATTGCAAAATTAAAGAAACCACCGGCAAAGAAGAAGCAAAAGCATGATCTTTTCAATTTAGAAGATCCCAAAGTAGAGGACCCTCCTCATGATCAAGCTAGAGAAGTTAATGGTAATGGAGAATACTCAGATTCTGGAGTGGATTTTTCTTCCGATGAAGATCCCTTAGCTGATGATTTTCTTGGAATAAGTGAGGATGAAGGTAAGTGTTCAGAGTCTTATTCTGGTTCAGATTCAGATGGTTTTGATATCGAGCAGTCGTCAAAAGCTATAGATGACCAAAAGGCTAAAGAACTAGAAGAAGCGGGGGCTGAAATGACACTCAACATTAATCAGGAATCTGATGAATTTAGATTACCAACTCATCAGGAACTTGAAGAAGAGGCACATAGGCCCCCTGATCTTGCAAATATTCAAAGGCGGATAAGAGAGATTGCTCGAGTCCTCACAAATTTTAAGACTTTGAGGCAAGATGGGGTCATGAGGAAGGACTACATCGAGCAAATTAGGAAGGATATGTGTTCATATTATGGTTACAATGATTTTCTAATAGGAGTGTTAGTAGAGATGTTTCCCGTTGCTGAGCTTTTGGAGATCGTAGAAGCTTTTGAGAAGCCAAGACCAATATGTTTAAGAACAAACACTCTAAAGACCCGGAGGCGTGACTTGGCTGATGTGCTGATAAATAGAGGAGTAAACTTGGCACCTTTGAGCAAGTGGTCCAAAGTAGGGCTGGTAGTGTATGATTCACAAGTGACAATTGGAGCCACTCCTGAATATATGGCTGGTTTTTATATGCTTCAAAGTGCAAGCTCATTTCTGCCTGTGATGGCCCTTGCTCCAAAAGAGAAAGAACGGATAGTTGATATGGCGGCTGCACCAGGTGGCAAAACAACATATATTGCTGCACTCATGAAAAATAGTGGAATAATTTTTGCAAATGAGTTTAAAGCTAAGAGGTTAAAGTCACTCACTGCAAATTTACATCGAATGGGGGTTACAAATACCATTGTTTGTAATTATGATGGAAAGGAGCTTCCAAAGGTTTTGGGTATTCACACAGCTGATAGAGTATTGTTGGATGCCCCATGTAGCGGATCTGGAGTCATCTCTAAAGACGAGTCTGTCAAAACCTCTAAAAGTTTAGAAGATATTGAAAAATGTGCTTATTTGCAGAAGGAACTTATACTTGCTGCAATAGATATGGTTGATGCCAATTCAAAAACTGGGGGTTATGTAGTTTATTCAACCTGCTCCATTATGGTGGCTGAGAATGAAGCAGTTGTAGACTATGCGATGAAGAAGAGGGATATTGAGCTTGTGCCATGTGGTCTTGACTTTGGGCGTCCAGGGTTCATCCGTTATAGAGAAAAACGGTTTCACCCATCTTTAGAGAAGACTAGGCGTTTCTACCCTCATGTACACAATATGGATGGCTTTTTTGTTGCAAAGAGTGGAGTCCTCGAAAACGGCAAGCCAGAATCCCAACCTTCATTCAAAAAGAAGGAAAAACGGGGATTCCCAACAGAGGCGGCAGAGAAAGTTGAGGCTGAAGAAAGTGGAGAAAGAAATGCTGGTGAGAATTTTCAACATCATGTTATACAAAAAAGCAGTAAAAGAAGAAAGAAGGAAGTAAAGAACAGAGAAGCTAAAAATGGCAAAGCAGAAGGATCCCAACACCCTTTCGAAAAGAAGGAAAAGCGGAAATTTCCATCGAAAGCGGAAATCTGTAAAAACAGGACCCTTCTGATTTTTAAGGGAATTGACGTGAATGCTGTGAGTACCGTTTGCAGCGAGGCTTCTGGCAGTGTAGGATTTCCTCGAGAGGAAGGCCATGGTCGGAGCAACTCCGAATCCATGCCTACCTTTTTCTCTGGCAGCGACTCTGTAAAAGTTGCTGGAGATGAAAGGAAGGTCGCAGCTTGGAAGCCGAGGCCAAGCAGAATGGCCAACAAAGCTCCAATCTCCACTAGCAACTCTGCACTTATTGCCATGATAGCTGATGAAGACACAGTAGTTGGATTTCTAATGGCTGGAGTAGGTAATGTTGACCTGAGGAGAAAGACAAATTACCTCATTGTGGACTCAAAAACAACTGTTAAACAAATTGAAGATGCCTTCAAGGAGTTCACAACAAGAGAGGATATTGCTGTAGTGCTCATCAGCCAATACGTTGCAAACATGATGAGGTTTTTGGTGGACAGCTATAACAAGCCAATTCCAGCAATTCTGGAGATTCCTTCGAAAAATCATCCTTATGATCCCACTCAAGACTCCATCTTGTCACGAGTGAAGCATCTTTTTTCTGCCGAGTCGGTGGCATCGGGGAGGCGCTGA 2367 41.91 MAGTIVNRKKIAKLKKPPAKKKQKHDLFNLEDPKVEDPPHDQAREVNGNGEYSDSGVDFSSDEDPLADDFLGISEDEGKCSESYSGSDSDGFDIEQSSKAIDDQKAKELEEAGAEMTLNINQESDEFRLPTHQELEEEAHRPPDLANIQRRIREIARVLTNFKTLRQDGVMRKDYIEQIRKDMCSYYGYNDFLIGVLVEMFPVAELLEIVEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLAPLSKWSKVGLVVYDSQVTIGATPEYMAGFYMLQSASSFLPVMALAPKEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEFKAKRLKSLTANLHRMGVTNTIVCNYDGKELPKVLGIHTADRVLLDAPCSGSGVISKDESVKTSKSLEDIEKCAYLQKELILAAIDMVDANSKTGGYVVYSTCSIMVAENEAVVDYAMKKRDIELVPCGLDFGRPGFIRYREKRFHPSLEKTRRFYPHVHNMDGFFVAKSGVLENGKPESQPSFKKKEKRGFPTEAAEKVEAEESGERNAGENFQHHVIQKSSKRRKKEVKNREAKNGKAEGSQHPFEKKEKRKFPSKAEICKNRTLLIFKGIDVNAVSTVCSEASGSVGFPREEGHGRSNSESMPTFFSGSDSVKVAGDERKVAAWKPRPSRMANKAPISTSNSALIAMIADEDTVVGFLMAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAVVLISQYVANMMRFLVDSYNKPIPAILEIPSKNHPYDPTQDSILSRVKHLFSAESVASGRR 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 37480364 37490926 + BLOR12283 Blo03g01102 58566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01102 788 MobiDBLite consensus disorder prediction 558 581 - -
Blo03g01102 788 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 12 587 IPR023267 GO:0001510
Blo03g01102 788 Gene3D Vaccinia Virus protein VP39 285 595 IPR029063 -
Blo03g01102 788 Gene3D Sun protein; domain 3 175 282 - -
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 172 192 IPR023273 GO:0008168
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 228 241 IPR023273 GO:0008168
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 205 217 IPR023273 GO:0008168
Blo03g01102 788 PANTHER BNACNNG49010D PROTEIN 12 587 - -
Blo03g01102 788 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 209 498 IPR001678 GO:0008168
Blo03g01102 788 Coils Coil 106 126 - -
Blo03g01102 788 Gene3D ATPase, V1 complex, subunit F 667 780 IPR036906 GO:0034220
Blo03g01102 788 MobiDBLite consensus disorder prediction 57 71 - -
Blo03g01102 788 MobiDBLite consensus disorder prediction 498 581 - -
Blo03g01102 788 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 668 782 IPR005772 GO:0033180|GO:0046961|GO:1902600
Blo03g01102 788 Pfam 16S rRNA methyltransferase RsmB/F 286 494 IPR001678 GO:0008168
Blo03g01102 788 MobiDBLite consensus disorder prediction 23 44 - -
Blo03g01102 788 Pfam ATP synthase (F/14-kDa) subunit 673 774 IPR008218 GO:0034220|GO:0046961
Blo03g01102 788 MobiDBLite consensus disorder prediction 1 92 - -
Blo03g01102 788 MobiDBLite consensus disorder prediction 505 536 - -
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase signature 420 436 IPR023267 GO:0001510
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase signature 298 308 IPR023267 GO:0001510
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase signature 480 497 IPR023267 GO:0001510
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase signature 366 378 IPR023267 GO:0001510
Blo03g01102 788 PRINTS RNA (C5-cytosine) methyltransferase signature 269 283 IPR023267 GO:0001510
Blo03g01102 788 SUPERFAMILY AtpF-like 673 776 IPR036906 GO:0034220
Blo03g01102 788 MobiDBLite consensus disorder prediction 618 637 - -
Blo03g01102 788 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 181 494 IPR029063 -
Blo03g01102 788 TIGRFAM nop2p: NOL1/NOP2/sun family putative RNA methylase 221 494 IPR011023 GO:0003723|GO:0006396|GO:0008757
Blo03g01102 788 Pfam N-terminal domain of 16S rRNA methyltransferase RsmF 205 282 IPR031341 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00505 Blo-Chr3:18793170 Blo03g01102 Blo-Chr3:37480364 8.44E-23 dispersed
Blo03g00776 Blo-Chr3:32404469 Blo03g01102 Blo-Chr3:37480364 2.88E-06 dispersed
Blo03g01102 Blo-Chr3:37480364 Blo03g01127 Blo-Chr3:37730924 0 dispersed
Blo03g01102 Blo-Chr3:37480364 Blo04g01138 Blo-Chr4:18725745 2.88E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01102 K14835 - vvi:100265196 773.852