Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01196 ATGTGCCCGCTTCGACTCATTCTCATTTTTCTTTCAGCAACTCTCGCCGGTTTCCTGGTCCTCAGAAATCTCAAATCTCCTCACTCCCCGGATTACCCGGCTGGAGACTCTCCCGACACTCCTTCCGCCTCTAACAGATCTCAATTCTCTAAGGTTTTAACTATTCTATTTTCTCCTTCTCTTTTGTCGACATGGCCAGCGGTCGCTATCTTTGGAGGCATTTCGTTTCCTCGTCATCGTCTTCCAAACTCGATGATTGATCATCTGCCTTCAGTATCATCCTCAATTGTGCTTTCTTGTTGCCATGTATCAGCAAGAAACCTTGATCTACCTCCTGCTGCATTGCCTTTAAACTACATTCTTCTTTGTTCCCATTCTTCTTTTCTTCCTCCATTTGAGAAACATCAAACTTTAGCGATCTCCAACCCGAGAGCAGATCTCATGCTTGAATGTCCAGGGACTGGTAAGCGGATAAAAAGAGAGGGAGATGTATGCTTTGAGATGGACAGGAGACAGTCATCTACTCCTGCAGGGATGACGATGCTCAATACAATCACCCCTTGCGCTGCCTGTAAGCTGTTAAGAAGAAGATGCGCCGAAGAATGTGGTTTCTCTCCCTACTTTTCTCCCCACGAACCCCAAAAGTTTGCAGCTGTCCACAAAGTCTTCGGCGCAAGCAATGTTTCCAAGTTGTTGATGGAAGTCCCAGAGACCCAGAGAGCAGATGCAGCAAATAGCTTAGTATTTGAAGCAAACTTGAGAATAAGAGACCCAGTGTATGGATGCACAGGTTCCATTTCCGCTCTGCAACACCAAATTCAGATTTTGCAAGGAGAGCTAAACACGGTGAGAGTTGAGATCCTCAAGTACAAATGTAGGAAAGCCACCAGCAGCCAAATCATTGCTTCTGCCCCGTTGGCTTTAGCTTCGTCAGTTGCTTCAACCCCACAAGCTCTTGCTCCACCTCCTCCAACGCCACCACTGCTTCCACCATCACTTATCATTTCTTCCTCCTCTTCCTCTTCCATTTACAATCCTGCAGCTAGTTCAACTGTTTACAGTTCCTCTACAAATGATAGCAGCGCCTCTTATTTACTCGACTAG 1104 46.29 MCPLRLILIFLSATLAGFLVLRNLKSPHSPDYPAGDSPDTPSASNRSQFSKVLTILFSPSLLSTWPAVAIFGGISFPRHRLPNSMIDHLPSVSSSIVLSCCHVSARNLDLPPAALPLNYILLCSHSSFLPPFEKHQTLAISNPRADLMLECPGTGKRIKREGDVCFEMDRRQSSTPAGMTMLNTITPCAACKLLRRRCAEECGFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPETQRADAANSLVFEANLRIRDPVYGCTGSISALQHQIQILQGELNTVRVEILKYKCRKATSSQIIASAPLALASSVASTPQALAPPPPTPPLLPPSLIISSSSSSSIYNPAASSTVYSSSTNDSSASYLLD 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38213320 38216371 - BLOR12377 Blo03g01196 58660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01196 367 Coils Coil 266 286 - -
Blo03g01196 367 ProSiteProfiles LOB domain profile. 186 287 IPR004883 -
Blo03g01196 367 PANTHER LOB DOMAIN PROTEIN 175 361 - -
Blo03g01196 367 Pfam Lateral organ boundaries (LOB) domain 187 283 IPR004883 -
Blo03g01196 367 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 175 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01196 Blo-Chr3:38213320 Blo04g00196 Blo-Chr4:1563536 7.50E-59 dispersed
Blo13g00804 Blo-Chr13:30805934 Blo03g01196 Blo-Chr3:38213320 4.39E-46 wgd
Blo03g01196 Blo-Chr3:38213320 Blo03g01204 Blo-Chr3:38313917 1.25E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12168 PF03195 LOB 2.20E-38 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01196 - - gmx:100786324 221.09