Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01209 ATGGAGTCTCTCTCTTTTGACGACCCGGGTTTTGACCGGCGAGTCCCGTCCTCGCAAGAAGAGTATAAGAAGCCAAAGAGATTGTCCAGCAGAGCCGTGGTTGCGCTGGCATATCAAAGTCTGGGTGTGGTTTATGGCGACCTCAGTACTTCTCCTCTCTATGTTTACAAAACCACCTTCTCAGGCAAACTGAGTCTCCACGAGACTGATGAAGAGATTTATGGGGTGCTTTCCTTCATCTTCTGGACAGTCACCATCATTGCTCTCTTGAAATATATTCTCATCGTCATGTCTGCTGATGACAATGGTGAAGGTGGAACCTTTGCACTGTACTCCCTCCTCTGTAGACATGCAAGGCTGAGTGTTCTACCCAATCAAGAGCCTCTTGATGAAAAGCTGTCTGCATATGCAGCTGAGGGACGTGCAGATACATGGCAAAGTGCTCTTCTGAGGTCAGCTTTCGAGAAACACCCAAAACTTCGACAGGGATTGTTCATTTTTGTTCTTCTCGGAACCTCCATGGCAATCGGTGATGGAGTATTCACTCCTGCAATATCAGTATTGTTCGGTAAAATGTCTAATTCGGTTGTTTTTTTGGGGTCAGATTATGTCGTTGCAATCTCATGCATAATCTTAGTGGGGTTATTCTCCCTTCAGCATCAAGGAACACACAAGGTTGCTTTCCTCTTTGCTCCAATTGTGACAGCATGGCTTCTATGTATCAGCGGCATCGGAATGTACAATATCCTCAAATGGAATCCATCTATTTTTCATGCGCTCTCTCCTTTTTACATGTTTAAGTTTCTTCGGAGCACCGGCCTCGAAGGGTGGGTGTCATTAGGTGGGATAGTTCTCTCCATAACAGGTGTGGAGGCAATGTTTGCAAATTTGGGTCATTTCTCCGCACTCTCAATAAAGAATAACCGAGAATGTGTAATCTATGTTTTGTTTCTTATTTCAATGTTTCGATGGTACTCTGATCTATCTCAATGTCATGTGGAATTGACGTCATATCACTTTATTTCAGAAGCCGTGTTTTGGCCGGTGTTCATAGTGGCCACTTTCGCTTCGGTTGTGGGTAGCCAGGCTGTAATTTCGGCTAGCTTCTCCATTGTAAGCCAATGCTGTGCTTTGCATTGTTTTCCGCACGTGAAGATTGTGCACACCTCGAGCAAAATATATGGTCAGATTTACATTCCGGAGGTTAATTGGATGCTAATGTTTGTTTGTCTAGCCGTGACGATTGGATTGAGGGACACAAACATGATAGGCCATGCTTACGGGTTGGCAGTGTCGACTGTGATGTTCGTGACGACTTGCTTGATGTCGTTAGTGATGATAATCGTGTGGAAAAAGACGATAGGAAATGGCATTGCGTTTTTCTTGTTTTTTGGATCGATTGAACTGCTTTACTTCTCAGCCTGCATCGTCAAAGTCCCGGAAGGAGGGTGGATTCCTCTTGTGATGACGCTTATCGCTACGAGTCTTATGCACGTGTGGAACTATGGAACATTGAAAAAACACATATTCGACGTCGAGAATAAAGTTTCGATAAATAGCATAGTCTCCCTTGGGCCTGGCCTTGGCATAGTCAGGGTCCCTGGCATCGGACTCGTGTATAGCAATTTGATAAGTGGAGTTCCTGCTATGTTTGGACATTTTGTGACGAATTTGCCGGCATTTCATCAGGTGCTGGTTTTTGTTTGTGTCAAATCCGTTCAAGTTCCATACGTTTGCGAAGAAGAAAGATTACTTATCCGTCGGATCGGTCCGAAAGAATATTGCATGTTTCGATGCATTGTGAGGTATGGCTACAAGGACGTAAAGTGCGAAAACTACAATTTCGAGAGTCAATTAGTATCTGCAATTGTGCAATACATCGAAACAGAGGAGGATGATCTTAAATCGACAGAGAAATTATCCGAAGGATGCGAGAGATCGAGTTTCGATTATTTTGAAGTTTCAAATCATGTTTTCTCGAACCCGAGTCGTCGAGAAAAGGACGCGAGATCTTGGTGCGAACATGGAGAGATGAATGTTGCTCCTTGTGATATGGAGAAGGAGAAGACCCTTTTGAAGAATGAATCGCTGCAGATACTGAACGCAAAAGAGTGGGGAGTGGCATTTATTTGTGGTCACGTCTCAGTGAAGGCAAAGAAATCATCGTCTGTGTTGAAGAAATTTGCTGTAGACGTTGTGTTTGCTTTTCTGAGTGAGAATTGCAGGGAGCAAGATGCTATTCTGAACGTTCCTCACACATGTTCGCTGGAAGTGGTTATGAGGGACTTCTCCAACCCTTCATCTTCATCTCCATCTTCTTCTTCTACTCCGGTCAGCGACCTCGTCCAGAGTATATTCTCTTACAATGGCAGCGTCATGCTCGCAGCCTTGGTTTCCTTTCTCTTCGTCCTTCTCTTCGTCCTCCTCCTCCACGTCTCCGCCAAATGGTTCTTCTCCGCTCAAGCGCGTGACCGTCGACGCCGCTCTATAACAGTCGCCAGACGGCTTACCCACCCACGCTTCTCCAATTTTCAGCCATTAACATTCGACTCTTCTCCCACAAACTCTCCTACCAAAGGGCTCAACCCTTCTGCCATCGCATTGATCCCTCTATTCGTTTATGAATCAGATAAAAGGAAAAATGGCCTGGAATGCGTGATTTGTCTGAGTGATTTTGAAGATTCAGAGATTGGAAGAAGCTTGCCGAAATGCAGCCACGCTTTTCACGTTGAATGTATTGATATGTGGCTGAGCTCTCACTCAAATTGTCCGATCTGCAGAGCTCCGGCGGTATATGAGGCCTCAAGCAAAATGGATGCCATTGTGGGATTGGGTGCCGGAGAATGA 2847 45.17 MESLSFDDPGFDRRVPSSQEEYKKPKRLSSRAVVALAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHETDEEIYGVLSFIFWTVTIIALLKYILIVMSADDNGEGGTFALYSLLCRHARLSVLPNQEPLDEKLSAYAAEGRADTWQSALLRSAFEKHPKLRQGLFIFVLLGTSMAIGDGVFTPAISVLFGKMSNSVVFLGSDYVVAISCIILVGLFSLQHQGTHKVAFLFAPIVTAWLLCISGIGMYNILKWNPSIFHALSPFYMFKFLRSTGLEGWVSLGGIVLSITGVEAMFANLGHFSALSIKNNRECVIYVLFLISMFRWYSDLSQCHVELTSYHFISEAVFWPVFIVATFASVVGSQAVISASFSIVSQCCALHCFPHVKIVHTSSKIYGQIYIPEVNWMLMFVCLAVTIGLRDTNMIGHAYGLAVSTVMFVTTCLMSLVMIIVWKKTIGNGIAFFLFFGSIELLYFSACIVKVPEGGWIPLVMTLIATSLMHVWNYGTLKKHIFDVENKVSINSIVSLGPGLGIVRVPGIGLVYSNLISGVPAMFGHFVTNLPAFHQVLVFVCVKSVQVPYVCEEERLLIRRIGPKEYCMFRCIVRYGYKDVKCENYNFESQLVSAIVQYIETEEDDLKSTEKLSEGCERSSFDYFEVSNHVFSNPSRREKDARSWCEHGEMNVAPCDMEKEKTLLKNESLQILNAKEWGVAFICGHVSVKAKKSSSVLKKFAVDVVFAFLSENCREQDAILNVPHTCSLEVVMRDFSNPSSSSPSSSSTPVSDLVQSIFSYNGSVMLAALVSFLFVLLFVLLLHVSAKWFFSAQARDRRRRSITVARRLTHPRFSNFQPLTFDSSPTNSPTKGLNPSAIALIPLFVYESDKRKNGLECVICLSDFEDSEIGRSLPKCSHAFHVECIDMWLSSHSNCPICRAPAVYEASSKMDAIVGLGAGE 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 38340426 38347039 - BLOR12390 Blo03g01209 58673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01209 948 SUPERFAMILY RING/U-box 870 932 - -
Blo03g01209 948 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 690 760 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo03g01209 948 TIGRFAM kup: potassium uptake protein 36 759 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo03g01209 948 MobiDBLite consensus disorder prediction 1 23 - -
Blo03g01209 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 849 931 IPR013083 -
Blo03g01209 948 SMART ring_2 885 926 IPR001841 -
Blo03g01209 948 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 24 634 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo03g01209 948 Pfam K+ potassium transporter 38 607 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo03g01209 948 PANTHER POTASSIUM TRANSPORTER 690 760 - -
Blo03g01209 948 PANTHER POTASSIUM TRANSPORTER 24 634 - -
Blo03g01209 948 CDD RING-H2_EL5_like 884 927 - -
Blo03g01209 948 Pfam Ring finger domain 884 927 IPR001841 -
Blo03g01209 948 ProSiteProfiles Zinc finger RING-type profile. 885 927 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01209 Blo-Chr3:38340426 Blo11g00671 Blo-Chr11:7429037 0 dispersed
Blo07g00573 Blo-Chr7:16653961 Blo03g01209 Blo-Chr3:38340426 3.80E-26 dispersed
Blo03g01209 Blo-Chr3:38340426 Blo04g00175 Blo-Chr4:1442225 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01209 K03549 - pop:18102064 1004.97