Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01280 ATGGCTACGGCGATGGTCCATCAGAGAGAGAGTAGCAGTGGAAGCTTAACTAAACACCTAGACAGCTCCGGAAAGTACGTCCGCTACACCGCCGAGCAGGTCGAGGCTCTTGAGCGAGTCTATGCTGATTGTCCCAAGCCGAGCTCTTTGCGCAGGCAAGAGCTCATCCGAGAGTGCCCTATTCTTGCTAACATCGAGTCCAAACAGATCAAAGTCTGGTTTCAGAATCGCAGGTGTAGAGAAAAGCATAAGAAGGAGTCCTCTAGGCTACAAACAGTGAATCGGAAATTGACTGCCATGAACAAGCTGTTGATGGAGGAGAATGATCGCTTGCAGAAACAGGTGTCACAGCTCGTATGCGAAAATGGGTTTATGCGGCAGCAATTGCATACAGTCAGTCCATCGGGTGCAGCTGCTGATGGGAGCTGCGAGTCTGTGGTTACCACTCCTCAGCATTCTCTAAGAGATGCTAATAACCCTGCTGGACTCCTCTCCATTGCAGATGAGATCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACCGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTTGGTTGGGATATTTGCTATTTCTCAACGCTGCAGTGGAGTGGCAGCTCGAGCTTGTGGTCTCGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATAAACCATCCTGGTTTCGGCAATGCCGGAACCTTGAAGTTTTTACCATGTTTCCAGCCGGAAATGGTGGGGCAATTGAACTTGTTTACACACAGCTTTATGCTCCTACGACACTGGCTCCGGCTCTGGATTTCTGGACCCTTCGATTTACTTCTACGTTAGACAACGGTAGCATTGTGGTTTGTGAGAGATCTCTGTCTGGCTCTGGTGCTGGCCCTAATGCGGCTGCTGTGTCTCAATTTGTACGAGCAGAGATGCTTCCAAGTGGGTATCTTATTCGACCATGTGATGGGGGAGGGTCGATAATACATATTGTTGACCATCTGAATCTCGAGGCATGGAGCGTACCTGAGGTTCTTCGACCGCTTTATGAATCATCGGAAGCGGTGGCTCAGAAATTAACTATAGCCGCATTGCGCTATATCAGGCAAATAGCTCAAGAGACAAGTGGTGAAGTTGTATATAGTATAGGAAGGCAGCCATCCCTTCTTCGATCGTTTAGTCACAGATTGAGCCGGGGCTTTAATGATATTGTGAATGGATTTAATGATGATGGCTGGTCAATAATTAACTGTGATGACGTCGAAGATGTTATACTTGCCGTGAATTCAGCCAAAAACTTGAGCCCAACGAGTTCTGTAGCCTTCCTAGGAGGGGTTCTTTGTGCAAAGGCGTCAATGCTTCTCCAAAATGTTTCTCCGGCTGTGCTTGTTCAGTTTTTGAGAGAGCACCGCTCAGAGTGGGCCGATTTTAATATCGATGCTTATTCTGCTTCGGCATTAAAAGCTGGTTCTTATTCCTATGCCGGGATGAGGGCGTTGAAGTTTACGGGGAGTCAAATTATAATGCCACTTGGTCATACTATTGAAAAGGAAGAGCTGCTTGAAGTTGTTCGACTTGAAGGTCATTCTCTTGCTCCGAAAGACGCATTCGTGTCGAGGGATATTCATCTTTTGCAGATATGTAGTGGCATTGATGAGAATGCTGTGGGAGCTTCTTCGGAACTCATTTTCGCTCCAATCGATGAAATGTTTCCTGACGATGCCCCCCTGCTTCCTTCTGGATTTCGGATCATCCAGTTGGATTCAAAAACTGCTTTCTTAGCGGTACATCGGACCCTTGATTTGACATCGAGTCTTGAAGTTGGTCCCAGCGGTGGAGACACATCTTCTCAAAATTCACGGTCGGTTTTAACCATTGCGTTTCAGTTTCCATTCGAGACGAGCTTTCAGAATAATGTCGCTACCATGGCTCGACAATACATGCAAAGTGTAATTTCTTCTGTTCAGAGGGTTGCCACTGCTATTTCTCCTTCTGGGTTTGGCCCGGGACTTGGACCGAAGATTTCTAGTGGTATGCCCGACGCCCATACTCTCGCACATTGGATATGTCAGAGCTATAGATATCACACGGGAGCAGATTTGCTGAGATCGGATTCGGACGACGGCTATGATGTGCTAAAACATCTATGGACTCATCAAGATGCGATTTTGTGCTGTTCATTGAAGTCGCTGCCGGTTTTCACGTTCGCCAATCAAGCCGGCCTTGACATGCTCGAGACAACTCTACTTGCTCTGCAAGATATCTCCTTAGACAAGATCTTCGAGGACGCCGGACGGAAAGCGTTGTGTTCAGACTTTGCAAAGTTAATAATGCAGCTGGGATTCACTTACTTGCCGGCCGGAATCTGCACGTCGACGATGGGTCGGCATGTTTCTTTCGAACAAGCTGTTGGATGGAAAGTGGTAGCATCAGAGGATGACAGTGTTCATTGCTTGGCCTTCTCTTTCATAAACTGGTCTTTTGTGTGA 2502 47.36 MATAMVHQRESSSGSLTKHLDSSGKYVRYTAEQVEALERVYADCPKPSSLRRQELIRECPILANIESKQIKVWFQNRRCREKHKKESSRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTVSPSGAAADGSCESVVTTPQHSLRDANNPAGLLSIADEILAEFLSKATGTAVDWVQMPGMKPGPDLVGIFAISQRCSGVAARACGLVSLEPTKIAEILKDKPSWFRQCRNLEVFTMFPAGNGGAIELVYTQLYAPTTLAPALDFWTLRFTSTLDNGSIVVCERSLSGSGAGPNAAAVSQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSEAVAQKLTIAALRYIRQIAQETSGEVVYSIGRQPSLLRSFSHRLSRGFNDIVNGFNDDGWSIINCDDVEDVILAVNSAKNLSPTSSVAFLGGVLCAKASMLLQNVSPAVLVQFLREHRSEWADFNIDAYSASALKAGSYSYAGMRALKFTGSQIIMPLGHTIEKEELLEVVRLEGHSLAPKDAFVSRDIHLLQICSGIDENAVGASSELIFAPIDEMFPDDAPLLPSGFRIIQLDSKTAFLAVHRTLDLTSSLEVGPSGGDTSSQNSRSVLTIAFQFPFETSFQNNVATMARQYMQSVISSVQRVATAISPSGFGPGLGPKISSGMPDAHTLAHWICQSYRYHTGADLLRSDSDDGYDVLKHLWTHQDAILCCSLKSLPVFTFANQAGLDMLETTLLALQDISLDKIFEDAGRKALCSDFAKLIMQLGFTYLPAGICTSTMGRHVSFEQAVGWKVVASEDDSVHCLAFSFINWSFV 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39101489 39106138 + BLOR12461 Blo03g01280 58744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01280 833 MobiDBLite consensus disorder prediction 1 20 - -
Blo03g01280 833 SUPERFAMILY Homeodomain-like 22 86 IPR009057 -
Blo03g01280 833 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Blo03g01280 833 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Blo03g01280 833 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Blo03g01280 833 Pfam START domain 166 373 IPR002913 GO:0008289
Blo03g01280 833 Gene3D - 202 382 IPR023393 -
Blo03g01280 833 Pfam MEKHLA domain 688 832 IPR013978 -
Blo03g01280 833 Coils Coil 94 121 - -
Blo03g01280 833 CDD bZIP 77 116 - -
Blo03g01280 833 SMART START_1 165 375 IPR002913 GO:0008289
Blo03g01280 833 SMART HOX_1 22 88 IPR001356 GO:0003677
Blo03g01280 833 CDD homeodomain 25 85 IPR001356 GO:0003677
Blo03g01280 833 SUPERFAMILY Bet v1-like 165 377 - -
Blo03g01280 833 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 833 - -
Blo03g01280 833 Gene3D - 18 91 - -
Blo03g01280 833 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 833 IPR044830 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01280 Blo-Chr3:39101489 Blo08g00260 Blo-Chr8:3315882 0 dispersed
Blo03g01089 Blo-Chr3:37340200 Blo03g01280 Blo-Chr3:39101489 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12175 PF01852 START 6.40E-42 CL0209 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01280 K09338 - rcu:8266275 1370.14