Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01298 ATGTTTAATCAGTTCGAAGCTTCTGCAAACCCACTAATGCAGCTCCAAGGCTTTGATTTGGAGCTTCATGATTTCATCGCCAGTCCTAACTTCGACCAGTTTGTCGATCTAATCAGAGGAGAAAACGAAAAGCCGGCTAGTTTTTTCGATCGAGATTACGTCAATAATGGGTGTTTTGTGGAAGATCAGTTTGGTTCGTCAAACCCAGGAGATATCTTGGATTTCAGTGGCGTTCCTGGGCCAGACGGCCAAGATTTTATGATGTTTAACAGATTGGATAGATTTGATGATGGGGAAGTGATCAAAGTAGGGGAAGAAGATGATGAGAATGATGAGGAGGATTCTTCTGCAACGACTGCGACAGTGACGAATGAAACGACGGCGAAGGGTGGTAAGGCCGAAAGATCGAGAACTTTGATTTCAGAGAGAAGAAGAAGAGGGAGGATGAAAGAGAAGCTTTATGCACTGCGTTCATTGGTTCCCAACATAACCAAGATGGATAAAGCCTCCATTGTTGGAGATGCTGTATTATACGTGCAAGAGCTGCAAATGCAGGCCAAAAAACTCAAGTCAGAGATAAAGGGCATAGAAGAATCGATTGGAAGAGCACAGGGATATGGAGGAGTAACTCAAAACCCTGAAAGGATTCCTCGTTCGACCATATTGGCTCCAAAGAAAATCATTCAGATGGACATTTTTCAGGTCGAGGAAAGAGGGTTTTACTTGAGAATAGCATGCGAGAGAGGACATGGAGTAGCCAGGTCTCTTTACAAAGTTCTTGAATCTATGAGGGGCTTCAACGTTCAGACCTCAAACTTGGCGACTGAGGCTGAGAGACTTGTTCTGACTGCAACTCTCAACGTCATGAAAGATTGTGAGCAGGAGATGCATTTGCCAAATTTGAAGGTTTGGTTGACTGGAGCTCTTCTTAACCAAGGATTCGAGTTTAAAGCCCCTTTCCCCAACTTGTAG 972 44.03 MFNQFEASANPLMQLQGFDLELHDFIASPNFDQFVDLIRGENEKPASFFDRDYVNNGCFVEDQFGSSNPGDILDFSGVPGPDGQDFMMFNRLDRFDDGEVIKVGEEDDENDEEDSSATTATVTNETTAKGGKAERSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVQELQMQAKKLKSEIKGIEESIGRAQGYGGVTQNPERIPRSTILAPKKIIQMDIFQVEERGFYLRIACERGHGVARSLYKVLESMRGFNVQTSNLATEAERLVLTATLNVMKDCEQEMHLPNLKVWLTGALLNQGFEFKAPFPNL 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39310381 39312051 + BLOR12479 Blo03g01298 58762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01298 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 198 IPR036638 GO:0046983
Blo03g01298 323 Pfam Helix-loop-helix DNA-binding domain 137 183 IPR011598 GO:0046983
Blo03g01298 323 Gene3D - 124 199 IPR036638 GO:0046983
Blo03g01298 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Blo03g01298 323 MobiDBLite consensus disorder prediction 104 139 - -
Blo03g01298 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 100 316 - -
Blo03g01298 323 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 100 316 - -
Blo03g01298 323 Coils Coil 179 199 - -
Blo03g01298 323 SMART finulus 139 188 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g01298 Blo08g00021 CCT
Blo03g01298 Blo14g00203 CCT
Blo03g01076 Blo03g01298 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01298 Blo-Chr3:39310381 Blo14g00682 Blo-Chr14:15294811 4.53E-19 dispersed
Blo16g00824 Blo-Chr16:34607059 Blo03g01298 Blo-Chr3:39310381 1.53E-09 dispersed
Blo14g00203 Blo-Chr14:1730219 Blo03g01298 Blo-Chr3:39310381 4.70E-99 wgd
Blo03g01076 Blo-Chr3:37143171 Blo03g01298 Blo-Chr3:39310381 2.26E-162 wgd
Blo03g01298 Blo-Chr3:39310381 Blo08g00021 Blo-Chr8:199617 6.06E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12179 PF00010 HLH 4.30E-09 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01298 - - qsu:112032263 315.079