Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01303 ATGGCTTTGACTCCATGGCCGCATTTCCTTCAAGTTCCAGTTCACTCGATCTATCCATCGTTTCATTGTCTACTTTACGCCGATGCTGTCTCTGTATCAAGCTTCTTTTCTCAATATGCATGTCTTCCTTCTCTGACTGCTGCGCGGAGCGGGGTCTCGTTGGTCCCAACTGTAGTGAAGGCCCCGTCCAGAGTGAAGCGTTTTGCGAAGTCCACAGAGGAGGAGCAGTTAAGTGGTTCGGAAATTCTAGCTGCCGAAGTTGGCGGAAGGAGTGAGCTTGATGATGAGAGTACCGCTCAATATCCAAGTTCGGAATCCGTTACTGGTCCTGCGCGGAGGATTCTTCCGTCATCGTCGAGTGATTCACTTTTGCTTGGGATTCGAGAGCCGGTTTATGAGGTGGTAGAAGTGAAATCAAATGGATCGGTATCCACTCAAAAGATTAACAGGCGTCAGTTGTTGAAGTTGAGTGGTCTTCGCCCACGTGATATCCGGAGTGTAGATCCTTCTTTGTTTTTGACGAACTCGATGCCTTCATTGTTGGTTCGTGAGCATGCTATTTTACTTAATCTGGGATCTTTGCGAGCGATAGCAATGAAGGAGTGTGTCCTCATATTTGACTATAACGGTAAAGGAGGGCAAGCTTTTATCGAGTCACTATTGCCTCGGTTGAACCTTAAAGGCATGAATGGGGGGCCATCAATGCCATTTGAACTTGAGGTTGTTGAAGCGGCATTGCTGTCCCGAACACAGAGGTTAGAGCAGAGACTAATGAATGTAGAACCTCGTGTTCAAGCTCTACTTGAGGTTTTGCCTACCAAATTAACTGCTGATGTATTGGAACAACTTCGCATTAGCAAGCAGACCTTGGTTGAACTGGGATCCAGAGCTGGGGCACTCAGACAAATGTTGCTTGATCTTCTGGAGGATCCTCATGAAATCCGTCGCATTTGCATTATGGGGAGAAATTGTACATTGAAGAAAGGAAGTGACGATGTTGAATGTTCTGTCCCTTCAGAAAAGCAAATTGCTGAGGAAGAAGAGGAAGAAATTGAGATGCTTCTGGAAAATTATCTTCAAAGATGCGAATCTTGTCATGGTCAGGCTGAAAGACTTCTGGACTCTGCAAAAGAAATGGAAGATTCTATTGCTGTCAATTTGAGCTCGAGGAGGTTGGAGGTCAGCAAAGTCGAACTACTTCTTCAAGTAGGGACGTTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGAGACAAAATTAGAGTTCAATCGAATGACTGTGTTTCCGTCTTTGGAGGAGAAGTCTTTGAAAGCCATAGTCAACGAGAGTTTAATTACTGAATCCCATGTCAATGTCTTTGCCTTTCCTGTTTGCAGGAACGCTCAAGCTGCGAAGTTTGCCGTCTTCGTCATCTCCTCGATGACAGTGGCGATCAGAGTGGTGTCTTGCGCTGTGAGACACTGCGTGTTCGCGCCGAATTTCTCTTCTCTCGGCAGTATTCTTGGAAATTCATTTTTACTCCATGGTGATCTGAGTGAGGGCTTTGAGAGCTCCAGGATATTCTTTTTGGTCCCGTTTTTGCTGTCCCAAGGTGGTGCAATGGATTTGTCCAAGGTCGGGGAAAAGATTTTGAGTTCGGTGAGGTCTGCCAGATCGCTCGGCCTTCTTCCTTCTACATCCGATCGGCCTGAGGTACCGGCACGGGCTGCCGCAGCAGCCGCCGTCGCCCGTGCACTTGCAGGATTGCCTCCTCATCAAAGGTTTAACATTGCTTCTAGCTCAGAGGAATTAAGTTCGATATATGGAAGTAGAAATCACAGTGAAGTGGTGGAGGAACTTGAGGAATCTTTCTATGAGGAGGACTTTGATCCAGTTGGTCATATTTTAGAGCAAATCGAATCAGAAGAGAATGAACTAGCTTATTTTGAGCAACAGGCTGCTATCAGATTAGCGCAACTGGATAGAGTGACAGAACAGTTATCCTGCCATGTGATGGAGCATTATGAAGTGATGGTGAAGGGGATGGATTTGGTAAGGGAATTGGAGAAAGACTTGAAGGTTGCAAATGTCATCTGCAGGAATGGAAGAAGACACCTAACCTCATCCGTACATGAAGTTTCGAGAGATCTCATAATAAACTCTAATTCAAAAAGGAAGCAAGCACTATTGGACATGCTTCCTGTTTTAGCCGAGCTGCGTCATGCAATGGACATGCAAGCATCCCTTGAATCTCTTGTTGAGGAAGGAAACTACTTCGGGGCTTTCCAAGTCTTATCCGAATACTTACAGCTCTTAGATAGTTTTTCAGAGTTCTCGGCAATACAAGAGATGAGCCGTGGTGTAGAGATATGGCTGGGAAGGACGCTGCAGAAGTTGGATTCGTTGTTGTTAGGAGTGTGTCAGGAATTCAAGGAGGAGAGCTACTTAGTTGTGATTGATGCATATGCACTCATTGGGGATGTCTCTGGTCTAGCTGAAAAGATACAAAGCTTCTTTATGCAGGAAGTGATATCAGAAAGCTACTCTGTGTTGAAGAGTATTATGCTAGAGGATTCAACAGCCCAAACTTCAATTGCGATTCCCAAAGGGGATTCAGACAAAAAAACTCCTGATTTTCAAGGAGTTAACTTCTCTTCTTCTGAGCGGAAGGAAACAGTAAGTACATCTTCAGTTGAGACGGCATCCATTTGCTCTTTGGTTGGAACTACTCAAACGACTGATGAGACTCAGACGGATAGCACTACAGCATCAACTAGTGGATCCCCTTGGTACTATTTGCGCAAAGATGCTATTGCTTTTGTTTCACAAACCCTTCAAAGAGGATGTAAAAATTTTTGGCAACTCACAACTAGCCGTGTGTCAGTACTTCTTTCTTCTGCGGCTGTTTGTTCTACCAGTATGCACCAATTCTTGAAAATTTATGAAGATCTGAATCTCTTCATCTTGGCTGGGGAGGCCTTCTGTGGAGTAGAAGCATTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTTTGTAGCATTTCATAAGCAGAATATACATGCACTTCAAATGGTTTTGGAGAAAGAGAGTTGGATGATATTGCCACCAGATACAGTTCATATTATTAGTTTTGCAGGCCTAGTTGGTGATGGAGCACCCTTAATTGTTCCATCTGATAGTGACTCCAACAATGTCAGGGTTCTTCGTTCAGATAAATCAACAAGCTCCACAAATGCTTATGCTAAAAAGAGTGGATTTGCTTACTGGCTTAAAAGTGGAAATCCATTTTTGCTAAAAGTAACACATATTTCAAAAGAAAGTCATCTTTCAGCCATTGTTAATGGAGAAGCTTATGGTGAGGTTGATGGTAATTTTAGCCCAAACTCTCATAATAATCATTCTATGCAAAATAGTGATAGAAATCATGTGAACAACAAGACATCAGTTTTGGAGGATGAAAATGAAGATCTTTTAGCCGACTTCATCGATGAGGACAGTCAGCTCCCTAGCCGAACTTCAGAACTCAAGCTTTCCAAAAATCAATCTTTACATTTGAATGGGGATGAAATCGCTGCACAAACAGGATCATCACTTTGTCTGTTAAAGTCAATGGATAAATACGCAAGGTTTATGCAGAAATTAGACATAATTAATGTTGAGTTCTTCAAGGGCATATGTCAGTTGTTCGAGGTGTTCTTTTATTTCACATATGAGGCGTTTGGCCAGCAAAATATTAATTCCAGTGGAAAAGGCTTTAGTGATCCACTAAGTTATAGGCTGACTACGGCATTGACTAGAATTACACAAGATTGTGAGCAGTGGATAAAATCCCACCAGTCATTGTCAACATCTTCAAATGTGTCACTTACTCTTGCTGAAGTCACCCCTAGTCCTCCAGTCATAAATTTTGGTCACATGCAAGGAACATCTTTTGGTCTGAAGGAAAGGTGTGCAGCTGCTGATACTTTATTTCTTATACGGCAAATGATGCTGAGGTCCAAAGCTCATATCCAGTCCATGCTTCTGCAAAAGAATGCATCTGTAATTGAAGATTTCTTTGTGCATATGGTGGATGCTGTGCTGGATCTCACCGAGCACATTCATAGGACCACTGCAAGAATGCTTCTCCATATAAATGGCTATGTTGATCGGATAGCTAATGCCAAATGGGAAGTAAAAGAGCTTGGGCTGGAGCATAATGGGTATGTTGACTTGTTGTTGGGAGAATTTAAGCACTACAAAACAAGGCTTGCTCGTGGAGAAATTCGCAAGGAGTTGCAAGATATCCTCTCGGATTATGGACTTGAAACTGTAGCTGAAACACTTATTGAGGGACTATCACGTGTAAGGAGATGCTCTGATGAAGGACGAGCTCTTATGTCATTGGATCTTCAGGTTTTAATCAACGGGCTGCAACATTTTGTTCCCATGAATGTCAAGCCTAAGTTACAAATAGTTGAAGCCTTCATCAAGGCTTACTACCTCCCGGAAACTGAGTATGTTCACTGGGCTCGTGCTCACCCGGAATACACCAAGAATCAGATTCTGGGCCTGGTTAACCTGGTTGCCACGATGAAAGGGTGGAAGAGAAAAACCAGACCTCCACAAGCTAGTAGAGATGACGAAGAAGAAGAAGAAAAGAAAGGTGTAATAATGGAGGCCTTGCAATATGAACTGGTAAAGAGACCTTCGAGATCAGATGTGGCCTCGCATCATCGTCTCCGTGGGATGGACGACAGTCAGGGGTGGGAAGAATTTGGCCCAGAGCAATGA 4758 43.48 MALTPWPHFLQVPVHSIYPSFHCLLYADAVSVSSFFSQYACLPSLTAARSGVSLVPTVVKAPSRVKRFAKSTEEEQLSGSEILAAEVGGRSELDDESTAQYPSSESVTGPARRILPSSSSDSLLLGIREPVYEVVEVKSNGSVSTQKINRRQLLKLSGLRPRDIRSVDPSLFLTNSMPSLLVREHAILLNLGSLRAIAMKECVLIFDYNGKGGQAFIESLLPRLNLKGMNGGPSMPFELEVVEAALLSRTQRLEQRLMNVEPRVQALLEVLPTKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPHEIRRICIMGRNCTLKKGSDDVECSVPSEKQIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSKVELLLQVGTFCVAVGALVAETKLEFNRMTVFPSLEEKSLKAIVNESLITESHVNVFAFPVCRNAQAAKFAVFVISSMTVAIRVVSCAVRHCVFAPNFSSLGSILGNSFLLHGDLSEGFESSRIFFLVPFLLSQGGAMDLSKVGEKILSSVRSARSLGLLPSTSDRPEVPARAAAAAAVARALAGLPPHQRFNIASSSEELSSIYGSRNHSEVVEELEESFYEEDFDPVGHILEQIESEENELAYFEQQAAIRLAQLDRVTEQLSCHVMEHYEVMVKGMDLVRELEKDLKVANVICRNGRRHLTSSVHEVSRDLIINSNSKRKQALLDMLPVLAELRHAMDMQASLESLVEEGNYFGAFQVLSEYLQLLDSFSEFSAIQEMSRGVEIWLGRTLQKLDSLLLGVCQEFKEESYLVVIDAYALIGDVSGLAEKIQSFFMQEVISESYSVLKSIMLEDSTAQTSIAIPKGDSDKKTPDFQGVNFSSSERKETVSTSSVETASICSLVGTTQTTDETQTDSTTASTSGSPWYYLRKDAIAFVSQTLQRGCKNFWQLTTSRVSVLLSSAAVCSTSMHQFLKIYEDLNLFILAGEAFCGVEAFEFRQKLKVVCENYFVAFHKQNIHALQMVLEKESWMILPPDTVHIISFAGLVGDGAPLIVPSDSDSNNVRVLRSDKSTSSTNAYAKKSGFAYWLKSGNPFLLKVTHISKESHLSAIVNGEAYGEVDGNFSPNSHNNHSMQNSDRNHVNNKTSVLEDENEDLLADFIDEDSQLPSRTSELKLSKNQSLHLNGDEIAAQTGSSLCLLKSMDKYARFMQKLDIINVEFFKGICQLFEVFFYFTYEAFGQQNINSSGKGFSDPLSYRLTTALTRITQDCEQWIKSHQSLSTSSNVSLTLAEVTPSPPVINFGHMQGTSFGLKERCAAADTLFLIRQMMLRSKAHIQSMLLQKNASVIEDFFVHMVDAVLDLTEHIHRTTARMLLHINGYVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLARGEIRKELQDILSDYGLETVAETLIEGLSRVRRCSDEGRALMSLDLQVLINGLQHFVPMNVKPKLQIVEAFIKAYYLPETEYVHWARAHPEYTKNQILGLVNLVATMKGWKRKTRPPQASRDDEEEEEKKGVIMEALQYELVKRPSRSDVASHHRLRGMDDSQGWEEFGPEQ 1585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 39345765 39374096 - BLOR12484 Blo03g01303 58767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01303 1585 Coils Coil 337 361 - -
Blo03g01303 1585 MobiDBLite consensus disorder prediction 1558 1585 - -
Blo03g01303 1585 Gene3D Magnesium transport protein CorA, transmembrane region 209 392 - -
Blo03g01303 1585 MobiDBLite consensus disorder prediction 1559 1577 - -
Blo03g01303 1585 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED 899 1528 - -
Blo03g01303 1585 MobiDBLite consensus disorder prediction 858 883 - -
Blo03g01303 1585 Pfam Protein of unknown function C-terminus (DUF2451) 1306 1527 IPR019514 -
Blo03g01303 1585 Gene3D - 127 208 - -
Blo03g01303 1585 PANTHER UNCHARACTERIZED 899 1528 IPR040047 GO:0032456|GO:0042147|GO:1990745
Blo03g01303 1585 PANTHER UNCHARACTERIZED 503 852 IPR040047 GO:0032456|GO:0042147|GO:1990745
Blo03g01303 1585 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED 503 852 - -
Blo03g01303 1585 CDD Mrs2_Mfm1p-like 134 415 IPR039204 -
Blo03g01303 1585 MobiDBLite consensus disorder prediction 96 114 - -
Blo03g01303 1585 Pfam Vacuolar-sorting protein 54, of GARP complex 609 855 IPR019515 -
Blo03g01303 1585 MobiDBLite consensus disorder prediction 90 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01303 K23288 VPS50; syndetin - csv:101206276 1380.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01303 Blo-Chr3:39345765 Blo10g00506 Blo-Chr10:11257200 1.32E-11 dispersed
Blo03g01303 Blo-Chr3:39345765 Blo03g01242 Blo-Chr3:38647699 2.35E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1134 . Blo03g01303 . . . Bpe08g01293 . Bma07g01468 . . . . . . . . . Bhi08g00115 . . . . . . . . . . . . . . . Cone18ag0237 Cone11ag1343 . . . . . . . Bda09g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g00517
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo10g00506 . 1 443 MRS2 Gene Family AT1G16010 82.7 5.3e-199 690.6
Blo16g01085 . 40 420 MRS2 Gene Family AT1G16010 55.9 2.6e-113 406.0
Blo01g00099 . 1 368 MRS2 Gene Family AT5G64560 81.3 5.2e-163 570.9
Blo03g00064 . 40 535 MRS2 Gene Family AT3G19640 62.8 2.9e-150 528.9
Blo03g00296 . 63 465 MRS2 Gene Family AT3G58970 67.2 5.2e-138 488.0
Blo16g01085 . 13 420 MRS2 Gene Family AT2G03620 64.2 7.0e-132 467.6
Blo10g00506 . 13 443 MRS2 Gene Family AT2G03620 52.3 9.8e-110 394.0
Blo01g00099 . 1 330 MRS2 Gene Family AT5G09690 76.2 6.9e-132 467.2
Blo01g00099 . 12 290 MRS2 Gene Family AT5G09720 66.0 9.3e-91 330.5
Blo10g00506 . 1 443 MRS2 Gene Family AT1G80900 83.3 3.1e-199 691.4
Blo16g01085 . 25 420 MRS2 Gene Family AT1G80900 53.3 4.5e-113 405.2
Blo03g01303 . 1 415 MRS2 Gene Family AT5G22830 66.0 1.4e-138 490.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005239 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01303 Blo_Chr03 FPKM 1.577779 1.987766 5.641057 5.009184 8.122439 8.094287 7.803355 6.230522 5.734705 6.70696