Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01379 ATGCAATCTCAATCTGAAGCCAGAGATAAAGTAGAATCGAGTGCCCATAACATCCCACCAGCCAATAGTTACTTTGAACCTTGGTGGCGTAACGTTGAATACAATTCTATTCCCCCACCCGGGACTGTGGTAAATGCTCCCAACTCTTCTTCAATGGAATGCCTAGACAATTGTTCGGAGTCCAATGATGACCGATCGATCTCTAGTGATGAGCATATTGATGATGATGATAATGCTGATAAACAATCACAGCGAATGGCTGAATCTGCACGTTCTGGTAATATTATAAACATAATAATAATGCAAGATTCGCAAAATGGACCACATGGAGCATCCTCTGGGCCGACAGTGCATGGTGCCTGCATGCCGCAACCTCCATTGCTTGAACTAGTTGGACATTCTATTGCATGTGCTCCGAATCCTTATCAGGATCCATATTATGGAGGAATGATGCCTGCTTATGGACATCAACCTCTGGGTTACCCTCCTGTTCTCGGAATGCCGCATGCTAGAATGCCTTTACCTCATGACATGATACAAGAGCCAGTTTTTGTCAATGCCAAGCAATACCAAGGGATTTTAAGAAGACGACAGGCTCGTGCTAAAGCTGAAGCTGAAAAGAAGCTGATAAAAAATAGGAAGCCGTATCTTCATGAATCTCGGCATAAGCATGCAATGAGAAGAGTAAGGAGTATTGGAGGGCGTTTTGCCAAGAAAGTCGAGGTCGAATCGGCCAACTGCACGTACAAAGAAAAAGGAACAGACCCAGTTCCAGCCCTGTCCTTGCAGTCAGCTTCGGAACTCTCAGCTGCTGACGGGAGTGAAAGATGGACGACAACAAATGGTCAGCAAGCAGCCAGCCGGCCCCAAAAATATGATACCCAAAACATCATTAACCACCAAATTCAGAGTCGCAATGGCCTCTTTGGTGAAACCGGGGAGGAAGGAGACTGCTCGGGCCAGGAACTGGTAAGAATTTCCAGGGACAAGGCTTCACACGGCCGGCGCCTAGCCATACAGTGA 1023 46.63 MQSQSEARDKVESSAHNIPPANSYFEPWWRNVEYNSIPPPGTVVNAPNSSSMECLDNCSESNDDRSISSDEHIDDDDNADKQSQRMAESARSGNIINIIIMQDSQNGPHGASSGPTVHGACMPQPPLLELVGHSIACAPNPYQDPYYGGMMPAYGHQPLGYPPVLGMPHARMPLPHDMIQEPVFVNAKQYQGILRRRQARAKAEAEKKLIKNRKPYLHESRHKHAMRRVRSIGGRFAKKVEVESANCTYKEKGTDPVPALSLQSASELSAADGSERWTTTNGQQAASRPQKYDTQNIINHQIQSRNGLFGETGEEGDCSGQELVRISRDKASHGRRLAIQ 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40225072 40227385 + BLOR12560 Blo03g01379 58843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01379 340 ProSiteProfiles NF-YA/HAP2 family profile. 179 239 IPR001289 GO:0003700|GO:0006355
Blo03g01379 340 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 32 329 - -
Blo03g01379 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 181 236 IPR001289 GO:0003700|GO:0006355
Blo03g01379 340 MobiDBLite consensus disorder prediction 264 294 - -
Blo03g01379 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 329 IPR001289 GO:0003700|GO:0006355
Blo03g01379 340 MobiDBLite consensus disorder prediction 1 23 - -
Blo03g01379 340 ProSitePatterns NF-YA/HAP2 subunit signature. 184 204 IPR018362 GO:0003677|GO:0016602
Blo03g01379 340 MobiDBLite consensus disorder prediction 58 84 - -
Blo03g01379 340 MobiDBLite consensus disorder prediction 43 57 - -
Blo03g01379 340 MobiDBLite consensus disorder prediction 43 89 - -
Blo03g01379 340 PRINTS CCAAT-binding transcription factor subunit B signature 182 204 IPR001289 GO:0003700|GO:0006355
Blo03g01379 340 PRINTS CCAAT-binding transcription factor subunit B signature 213 236 IPR001289 GO:0003700|GO:0006355
Blo03g01379 340 Gene3D - 179 241 - -
Blo03g01379 340 SMART cbf3 178 239 IPR001289 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo03g01379 Blo14g00284 CCT
Blo03g01379 Blo08g00103 CCT
Blo03g01379 Blo14g00284 ECH
Blo03g01379 Blo03g00980 ECH
Blo03g01379 Blo08g00103 ECH
Blo03g00980 Blo03g01379 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01379 Blo-Chr3:40225072 Blo08g00259 Blo-Chr8:3301451 1.80E-39 dispersed
Blo14g00284 Blo-Chr14:2845175 Blo03g01379 Blo-Chr3:40225072 4.34E-87 wgd
Blo03g00980 Blo-Chr3:35958672 Blo03g01379 Blo-Chr3:40225072 2.94E-129 wgd
Blo03g01379 Blo-Chr3:40225072 Blo08g00103 Blo-Chr8:1083191 1.46E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12184 PF02045 CBFB_NFYA 1.10E-25 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01379 K08064 - jre:108998712 338.576