Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo03g01396 | ATGGCTGGGGAATCGTTCGATCAGAACTCGAGCATTCCGATTTCTCCGTCCGATTCTCCCACCTCTGCTGACTTCAATACCGATCAGCTTCCTTTCACTAGCCACACATCCAACAACTACTCCGACGATGAGGAGGCGGCTGTAGATCCTAATATAATCCTCGATGAGCCAAATGATGCTGAAGAAGGCGAGGAGGACGGAGAGGATCTCTACAATGATAATTTTATGGATGATTACCGGAGGATGGAGGAACATGACCAATATGAATCCCTGGGACTCAATGACTCTTTGGATGACGACAGAGATTTGGATCAAATTATGGAAGATCGAAGGGCTGCTGAATTGGAGCTCGACGCACGAGATGGTCGCTCCACCCAGCGCAAACTTCCACAGCTACTTCATGATAATGACTCTGAGGATGACAACAATAGGCCGCCAAAAAGAGCTAGGGCTTCTAGGCCTTCAGCTGCAGCGAGAAGTTATGATGATGATGATGGAATGCGAAGTTCACCTGGAAGATCACAGCAAGATCATTCTAGAGACGATATCCCCATGACTGATCATTCAATTGATGAACAGTATGAGGATGAAGATGACGATGAAGGTGAGTTTGAAATGTATAGGGTCCAAGGAACTCTAAGAGAGTGGGTAACTAGGGATGAAGTCCGTCGCTTCATTAGCAAGAAATTCAAAAATTTCTTAGAAACATATGTCAATCCAAAAAATGGACATTCTGAGCTCGTATACATGCGGCTCATAAATGAGATGGTGTTGGCTAACAGTAGCAGCTTGGAGGTAGATTATAAGCAGTTTATTTATGTACATCCAAATATTGCCATCTGGTTGGCTGATGCCCCACAATCTGTCCTAGAAGTCATGGAAGAAGTTGCAAAGAAGGTAGTATTTGACATACATCCAAATTACAAGAGTATTCACCAGAAAATCTACGTGAGGATAACCAACTTACCTGTATATGATCAGATTCGAAACATTAGGCAAATCCACTTGAATACCATGATTCGTATTGGAGGGGTTGTGACTCGGCGATCTGGTGTTTTTCCTCAGTTGCAGCAGGTCAAATATGATTGCAACAAATGTGGGGCAATATTAGGGCCATTTTTCCAGAATTCGTATTCAGAAGTCAAGGTTGGTTCTTGCCCTGAATGCCAATCAAATGGGCCATTCACTGTTAATGTTGAACAGACTGTATATAGGAACTACCAGAAGCTTACCCTGCAAGAAAGCCCTGGTATTGTTCCTGCAGGTCGCCTTCCAAGATACAAGGAAGTGATATTGTTGAATGATCTGATTGATTGTGCCCGCCCTGGGGAAGAAATTGAAGTCACAGGAATTTATACGAATAACTTCGATTTATCTTTAAATACGAAGAATGGATTTCCCGTCTTTGCTACTGTTGTTGAAGCAAACTACGTTACCAAGAAGCAAGACCTCTTCTCTGCTTACAAACTTACCCAGGAAGACAAAGAAGAAATTGACAAGCTGGCTAAAGATCCAAGAATTGGAGAAAGGATTATCAAATCCATAGCTCCATCAATATATGGCCATGAGGATATTAAAACAGCCATAGCTCTTTCTATGTTCGGTGGTCAAGAGAAAAATGTTGAAGGGAAACATCGGTTAAGAGGTGACATCAATGTACTTCTTCTTGGAGATCCAGGAACGGCAAAGTCACAATTTCTAAAATATGTTGAAAAGACTGGTCAAAGAGCAGTGTACACCACAGGTAAAGGAGCTTCTGCTGTTGGACTCACAGCAGCTGTGCACAAGGACCCTGTTACAAGGGAATGGACCCTTGAAGGAGGTGCCCTTGTTTTAGCTGATAAAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAATGATCAAGATCGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGTATATCAAAGGCTGGGATAGTCACTTCTCTTCAGGCACGTTGTGCTGTCATTGCTGCAGCTAATCCCATTGGAGGAAGGTATGATTCCTCAAAAACATTTACCCAGAATGTTGAGCTGACAGATCCTATCATTTCTCGTTTTGACATCCTATGTGTAGTGAAGGATGTTGTAGATCCTGTCATAGATGAGATGCTTGCGAAGTTTGTTGTTGATAGTCATTTTAAATCACAGCCTAAGGGTTCAAGTGTTGAAGATAAGTCCAATTGTGAGGAGTCTCAGGATGACATTCAAGACTCTGATAGGCCAGTTGATGTTGAGGTGCTGCCTCAGGATCTGCTTAGAAAATATATAACTTATGCAAAGTTAAATATTTTTCCAAGGTTGCATGATGCTGATATGGATAAGCTCACACACGTATATGCTGAGCTGCGGCGTGAATCATCTCATGGACAAGGAGTTCCAATTGCAGTGAGACACATAGAATCAATGATAAGGATGTCTGAGGCCCATGCAAGAATGCACCTCAGGCAGCATGTTACACAAGAAGATGTGGATATGGCAATCCGAGTACTTCTTGATTCATTCATTTCAACACAAAAATTTGGGGTGCAGAAAGCACTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAAAAGGATTACAACGAACTACTCCTCCATCTCCTTCGTGAGCTGGTGAAGAATGCATTGCACTCCAAGGAAATAGTTTCCGGTTCTATTGCAGGACTTACCCATATTGACGTGAAAGTAGAGGATTTGCAAACCAAGGCACGGGAACACGAAATATTTGATCTTAGGCCTTTTTTCTCAAGATATTATTTCATGGCTTTAACGATCACCGAATTTCGCCTTTATGCCTATGACATTGTGTGCCTGGAGAGGTTGGGGTCTTGCTCTGTCGACATTGAGCTGAAATTCTTGCTATACAAATCAAAAAAGATTGTCATCGATTTTGTGTGGGGCCTGAGTGAGGGTTGGAGATCGAACCTTGTGAGACTGGAGCTCAGGTGTCGGCTGGAGCTCAGGCGTCAGAGCTCGGCGGTCTGGAAGATAGAAAGCTGGGGGAACCAGACGGGACTCGAGAGGCTCGGGAGGCTTGTCACTCCCGATCAGCTGTCAACTCAGGAGGCTGGAGTCGTGGTCTCCTGGTTGCCAAAGGGCTGGAGTCGTGATTGCCTGGTCGCCGAAGGGCTGGAGTCGTGGTCGCAGGAGCCGGGAGGGGATGATGAGATTGAGAGAGAATGA | 3198 | 43.87 | MAGESFDQNSSIPISPSDSPTSADFNTDQLPFTSHTSNNYSDDEEAAVDPNIILDEPNDAEEGEEDGEDLYNDNFMDDYRRMEEHDQYESLGLNDSLDDDRDLDQIMEDRRAAELELDARDGRSTQRKLPQLLHDNDSEDDNNRPPKRARASRPSAAARSYDDDDGMRSSPGRSQQDHSRDDIPMTDHSIDEQYEDEDDDEGEFEMYRVQGTLREWVTRDEVRRFISKKFKNFLETYVNPKNGHSELVYMRLINEMVLANSSSLEVDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAKKVVFDIHPNYKSIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSNGPFTVNVEQTVYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIDKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALSMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCAVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDILCVVKDVVDPVIDEMLAKFVVDSHFKSQPKGSSVEDKSNCEESQDDIQDSDRPVDVEVLPQDLLRKYITYAKLNIFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLHLLRELVKNALHSKEIVSGSIAGLTHIDVKVEDLQTKAREHEIFDLRPFFSRYYFMALTITEFRLYAYDIVCLERLGSCSVDIELKFLLYKSKKIVIDFVWGLSEGWRSNLVRLELRCRLELRRQSSAVWKIESWGNQTGLERLGRLVTPDQLSTQEAGVVVSWLPKGWSRDCLVAEGLESWSQEPGGDDEIERE | 1065 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 40460436 | 40474026 | - | BLOR12577 | Blo03g01396 | 58860 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo03g01396 | 1065 | PANTHER | DNA HELICASE | 146 | 925 | - | - | |
| Blo03g01396 | 1065 | MobiDBLite | consensus disorder prediction | 722 | 745 | - | - | |
| Blo03g01396 | 1065 | SMART | mcm | 324 | 840 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | Gene3D | - | 220 | 324 | - | - | |
| Blo03g01396 | 1065 | ProSiteProfiles | MCM family domain profile. | 507 | 713 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 337 | 354 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 456 | 467 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 360 | 372 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 471 | 482 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 395 | 409 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Blo03g01396 | 1065 | MobiDBLite | consensus disorder prediction | 720 | 745 | - | - | |
| Blo03g01396 | 1065 | Pfam | MCM P-loop domain | 495 | 717 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 146 | 925 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | Pfam | MCM OB domain | 327 | 454 | IPR033762 | - | |
| Blo03g01396 | 1065 | Gene3D | - | 328 | 453 | IPR012340 | - | |
| Blo03g01396 | 1065 | MobiDBLite | consensus disorder prediction | 157 | 190 | - | - | |
| Blo03g01396 | 1065 | ProSitePatterns | MCM family signature. | 616 | 624 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Blo03g01396 | 1065 | CDD | MCM2 | 510 | 838 | - | - | |
| Blo03g01396 | 1065 | MobiDBLite | consensus disorder prediction | 73 | 148 | - | - | |
| Blo03g01396 | 1065 | Pfam | MCM AAA-lid domain | 755 | 839 | IPR041562 | - | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 660 | 672 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 687 | 695 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 636 | 649 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 622 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 548 | 563 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo03g01396 | 1065 | Pfam | Mini-chromosome maintenance protein 2 | 43 | 199 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Blo03g01396 | 1065 | MobiDBLite | consensus disorder prediction | 1 | 202 | - | - | |
| Blo03g01396 | 1065 | Pfam | MCM N-terminal domain | 228 | 321 | IPR027925 | - | |
| Blo03g01396 | 1065 | SUPERFAMILY | Nucleic acid-binding proteins | 229 | 476 | IPR012340 | - | |
| Blo03g01396 | 1065 | Gene3D | - | 355 | 405 | - | - | |
| Blo03g01396 | 1065 | Gene3D | - | 487 | 862 | IPR027417 | - | |
| Blo03g01396 | 1065 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 517 | 842 | IPR027417 | - | |
| Blo03g01396 | 1065 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Blo03g01396 | 1065 | MobiDBLite | consensus disorder prediction | 55 | 72 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo01g00598 | Blo-Chr1:6577186 | Blo03g01396 | Blo-Chr3:40460436 | 3.39E-100 | dispersed | |
| Blo03g01396 | Blo-Chr3:40460436 | Blo10g00430 | Blo-Chr10:7793506 | 3.20E-102 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo03g01396 | K02540 | - | vvi:100266163 | 1510.35 |