Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01396 ATGGCTGGGGAATCGTTCGATCAGAACTCGAGCATTCCGATTTCTCCGTCCGATTCTCCCACCTCTGCTGACTTCAATACCGATCAGCTTCCTTTCACTAGCCACACATCCAACAACTACTCCGACGATGAGGAGGCGGCTGTAGATCCTAATATAATCCTCGATGAGCCAAATGATGCTGAAGAAGGCGAGGAGGACGGAGAGGATCTCTACAATGATAATTTTATGGATGATTACCGGAGGATGGAGGAACATGACCAATATGAATCCCTGGGACTCAATGACTCTTTGGATGACGACAGAGATTTGGATCAAATTATGGAAGATCGAAGGGCTGCTGAATTGGAGCTCGACGCACGAGATGGTCGCTCCACCCAGCGCAAACTTCCACAGCTACTTCATGATAATGACTCTGAGGATGACAACAATAGGCCGCCAAAAAGAGCTAGGGCTTCTAGGCCTTCAGCTGCAGCGAGAAGTTATGATGATGATGATGGAATGCGAAGTTCACCTGGAAGATCACAGCAAGATCATTCTAGAGACGATATCCCCATGACTGATCATTCAATTGATGAACAGTATGAGGATGAAGATGACGATGAAGGTGAGTTTGAAATGTATAGGGTCCAAGGAACTCTAAGAGAGTGGGTAACTAGGGATGAAGTCCGTCGCTTCATTAGCAAGAAATTCAAAAATTTCTTAGAAACATATGTCAATCCAAAAAATGGACATTCTGAGCTCGTATACATGCGGCTCATAAATGAGATGGTGTTGGCTAACAGTAGCAGCTTGGAGGTAGATTATAAGCAGTTTATTTATGTACATCCAAATATTGCCATCTGGTTGGCTGATGCCCCACAATCTGTCCTAGAAGTCATGGAAGAAGTTGCAAAGAAGGTAGTATTTGACATACATCCAAATTACAAGAGTATTCACCAGAAAATCTACGTGAGGATAACCAACTTACCTGTATATGATCAGATTCGAAACATTAGGCAAATCCACTTGAATACCATGATTCGTATTGGAGGGGTTGTGACTCGGCGATCTGGTGTTTTTCCTCAGTTGCAGCAGGTCAAATATGATTGCAACAAATGTGGGGCAATATTAGGGCCATTTTTCCAGAATTCGTATTCAGAAGTCAAGGTTGGTTCTTGCCCTGAATGCCAATCAAATGGGCCATTCACTGTTAATGTTGAACAGACTGTATATAGGAACTACCAGAAGCTTACCCTGCAAGAAAGCCCTGGTATTGTTCCTGCAGGTCGCCTTCCAAGATACAAGGAAGTGATATTGTTGAATGATCTGATTGATTGTGCCCGCCCTGGGGAAGAAATTGAAGTCACAGGAATTTATACGAATAACTTCGATTTATCTTTAAATACGAAGAATGGATTTCCCGTCTTTGCTACTGTTGTTGAAGCAAACTACGTTACCAAGAAGCAAGACCTCTTCTCTGCTTACAAACTTACCCAGGAAGACAAAGAAGAAATTGACAAGCTGGCTAAAGATCCAAGAATTGGAGAAAGGATTATCAAATCCATAGCTCCATCAATATATGGCCATGAGGATATTAAAACAGCCATAGCTCTTTCTATGTTCGGTGGTCAAGAGAAAAATGTTGAAGGGAAACATCGGTTAAGAGGTGACATCAATGTACTTCTTCTTGGAGATCCAGGAACGGCAAAGTCACAATTTCTAAAATATGTTGAAAAGACTGGTCAAAGAGCAGTGTACACCACAGGTAAAGGAGCTTCTGCTGTTGGACTCACAGCAGCTGTGCACAAGGACCCTGTTACAAGGGAATGGACCCTTGAAGGAGGTGCCCTTGTTTTAGCTGATAAAGGAATTTGTCTTATTGACGAGTTTGACAAGATGAATGATCAAGATCGGGTGAGTATCCATGAAGCAATGGAGCAGCAAAGCATTAGTATATCAAAGGCTGGGATAGTCACTTCTCTTCAGGCACGTTGTGCTGTCATTGCTGCAGCTAATCCCATTGGAGGAAGGTATGATTCCTCAAAAACATTTACCCAGAATGTTGAGCTGACAGATCCTATCATTTCTCGTTTTGACATCCTATGTGTAGTGAAGGATGTTGTAGATCCTGTCATAGATGAGATGCTTGCGAAGTTTGTTGTTGATAGTCATTTTAAATCACAGCCTAAGGGTTCAAGTGTTGAAGATAAGTCCAATTGTGAGGAGTCTCAGGATGACATTCAAGACTCTGATAGGCCAGTTGATGTTGAGGTGCTGCCTCAGGATCTGCTTAGAAAATATATAACTTATGCAAAGTTAAATATTTTTCCAAGGTTGCATGATGCTGATATGGATAAGCTCACACACGTATATGCTGAGCTGCGGCGTGAATCATCTCATGGACAAGGAGTTCCAATTGCAGTGAGACACATAGAATCAATGATAAGGATGTCTGAGGCCCATGCAAGAATGCACCTCAGGCAGCATGTTACACAAGAAGATGTGGATATGGCAATCCGAGTACTTCTTGATTCATTCATTTCAACACAAAAATTTGGGGTGCAGAAAGCACTGCAAAAGAGCTTCAGAAAGTATATGACTTTCAAAAAGGATTACAACGAACTACTCCTCCATCTCCTTCGTGAGCTGGTGAAGAATGCATTGCACTCCAAGGAAATAGTTTCCGGTTCTATTGCAGGACTTACCCATATTGACGTGAAAGTAGAGGATTTGCAAACCAAGGCACGGGAACACGAAATATTTGATCTTAGGCCTTTTTTCTCAAGATATTATTTCATGGCTTTAACGATCACCGAATTTCGCCTTTATGCCTATGACATTGTGTGCCTGGAGAGGTTGGGGTCTTGCTCTGTCGACATTGAGCTGAAATTCTTGCTATACAAATCAAAAAAGATTGTCATCGATTTTGTGTGGGGCCTGAGTGAGGGTTGGAGATCGAACCTTGTGAGACTGGAGCTCAGGTGTCGGCTGGAGCTCAGGCGTCAGAGCTCGGCGGTCTGGAAGATAGAAAGCTGGGGGAACCAGACGGGACTCGAGAGGCTCGGGAGGCTTGTCACTCCCGATCAGCTGTCAACTCAGGAGGCTGGAGTCGTGGTCTCCTGGTTGCCAAAGGGCTGGAGTCGTGATTGCCTGGTCGCCGAAGGGCTGGAGTCGTGGTCGCAGGAGCCGGGAGGGGATGATGAGATTGAGAGAGAATGA 3198 43.87 MAGESFDQNSSIPISPSDSPTSADFNTDQLPFTSHTSNNYSDDEEAAVDPNIILDEPNDAEEGEEDGEDLYNDNFMDDYRRMEEHDQYESLGLNDSLDDDRDLDQIMEDRRAAELELDARDGRSTQRKLPQLLHDNDSEDDNNRPPKRARASRPSAAARSYDDDDGMRSSPGRSQQDHSRDDIPMTDHSIDEQYEDEDDDEGEFEMYRVQGTLREWVTRDEVRRFISKKFKNFLETYVNPKNGHSELVYMRLINEMVLANSSSLEVDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAKKVVFDIHPNYKSIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSNGPFTVNVEQTVYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIDKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALSMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCAVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDILCVVKDVVDPVIDEMLAKFVVDSHFKSQPKGSSVEDKSNCEESQDDIQDSDRPVDVEVLPQDLLRKYITYAKLNIFPRLHDADMDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLHLLRELVKNALHSKEIVSGSIAGLTHIDVKVEDLQTKAREHEIFDLRPFFSRYYFMALTITEFRLYAYDIVCLERLGSCSVDIELKFLLYKSKKIVIDFVWGLSEGWRSNLVRLELRCRLELRRQSSAVWKIESWGNQTGLERLGRLVTPDQLSTQEAGVVVSWLPKGWSRDCLVAEGLESWSQEPGGDDEIERE 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40460436 40474026 - BLOR12577 Blo03g01396 58860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01396 1065 PANTHER DNA HELICASE 146 925 - -
Blo03g01396 1065 MobiDBLite consensus disorder prediction 722 745 - -
Blo03g01396 1065 SMART mcm 324 840 IPR031327 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 Gene3D - 220 324 - -
Blo03g01396 1065 ProSiteProfiles MCM family domain profile. 507 713 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 337 354 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 456 467 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 360 372 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 471 482 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 395 409 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Blo03g01396 1065 MobiDBLite consensus disorder prediction 720 745 - -
Blo03g01396 1065 Pfam MCM P-loop domain 495 717 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 146 925 IPR031327 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 Pfam MCM OB domain 327 454 IPR033762 -
Blo03g01396 1065 Gene3D - 328 453 IPR012340 -
Blo03g01396 1065 MobiDBLite consensus disorder prediction 157 190 - -
Blo03g01396 1065 ProSitePatterns MCM family signature. 616 624 IPR018525 GO:0003677|GO:0005524|GO:0006260
Blo03g01396 1065 CDD MCM2 510 838 - -
Blo03g01396 1065 MobiDBLite consensus disorder prediction 73 148 - -
Blo03g01396 1065 Pfam MCM AAA-lid domain 755 839 IPR041562 -
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein family signature 660 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein family signature 687 695 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein family signature 636 649 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 622 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 PRINTS Mini-chromosome maintenance (MCM) protein family signature 548 563 IPR001208 GO:0003677|GO:0005524|GO:0032508
Blo03g01396 1065 Pfam Mini-chromosome maintenance protein 2 43 199 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Blo03g01396 1065 MobiDBLite consensus disorder prediction 1 202 - -
Blo03g01396 1065 Pfam MCM N-terminal domain 228 321 IPR027925 -
Blo03g01396 1065 SUPERFAMILY Nucleic acid-binding proteins 229 476 IPR012340 -
Blo03g01396 1065 Gene3D - 355 405 - -
Blo03g01396 1065 Gene3D - 487 862 IPR027417 -
Blo03g01396 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 842 IPR027417 -
Blo03g01396 1065 MobiDBLite consensus disorder prediction 1 44 - -
Blo03g01396 1065 MobiDBLite consensus disorder prediction 55 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01396 K02540 MCM2; DNA replication licensing factor MCM2 [EC:5.6.2.3] - vvi:100266163 1510.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00598 Blo-Chr1:6577186 Blo03g01396 Blo-Chr3:40460436 3.39E-100 dispersed
Blo03g01396 Blo-Chr3:40460436 Blo10g00430 Blo-Chr10:7793506 3.20E-102 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00974 . 145 882 Core DNA Replication Machinery Family AT4G14700 65.6 2.2e-283 971.8
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G14700 57.4 7.9e-217 750.7
Blo03g00974 . 80 882 Core DNA Replication Machinery Family AT4G12620 62.7 2.4e-290 995.0
Blo03g00975 . 123 719 Core DNA Replication Machinery Family AT4G12620 58.0 1.3e-222 770.0
Blo17g00848 . 206 531 Core DNA Replication Machinery Family AT2G37560 62.7 2.8e-123 438.7
Blo01g00744 . 1 408 Core DNA Replication Machinery Family AT2G01120 54.3 5.0e-122 434.9
Blo01g00205 . 3 527 Core DNA Replication Machinery Family AT4G29910 57.7 5.4e-172 601.3
Blo10g00449 . 1 264 Core DNA Replication Machinery Family AT1G26840 69.3 1.7e-94 342.8
Blo01g00424 . 452 676 Core DNA Replication Machinery Family AT1G26840 68.4 1.0e-78 290.4
Blo15g00779 . 1 814 Core DNA Replication Machinery Family AT1G79150 56.2 1.5e-234 809.7
Blo15g00681 . 1 539 Core DNA Replication Machinery Family AT1G79150 52.1 8.0e-132 468.4
Blo03g01396 . 1 921 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1335.5
Blo14g00834 . 48 628 Core DNA Replication Machinery Family AT5G46280 78.8 2.6e-259 891.3
Blo10g00430 . 22 836 Core DNA Replication Machinery Family AT2G16440 72.0 0.0e+00 1130.5
Blo01g00598 . 1 709 Core DNA Replication Machinery Family AT2G07690 76.8 6.9e-313 1069.7
Blo08g00626 . 137 962 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1152.9
Blo06g00534 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.8 0.0e+00 1204.9
Blo14g00089 BCT 25 548 Core DNA Replication Machinery Family AT2G29680 53.7 4.7e-143 505.0
Blo13g01051 BCT 26 524 Core DNA Replication Machinery Family AT2G29680 54.0 1.8e-142 503.1
Blo14g00089 BCT 1 518 Core DNA Replication Machinery Family AT1G07270 51.4 4.3e-130 461.8
Blo13g01051 BCT 24 493 Core DNA Replication Machinery Family AT1G07270 52.8 1.1e-128 457.2
Blo15g00359 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.4e-255 878.2
Blo06g00379 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 9.2e-255 876.3
Blo09g00553 . 22 795 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1090.1
Blo04g01396 . 6 361 Core DNA Replication Machinery Family AT2G14050 73.8 1.9e-165 579.7
Blo06g00837 . 1 964 Core DNA Replication Machinery Family AT1G77320 50.5 1.6e-259 892.9
Blo05g00261 . 853 1159 Core DNA Replication Machinery Family AT4G02110 58.1 5.6e-102 369.8
Blo10g00626 . 101 299 Core DNA Replication Machinery Family AT1G80190 70.3 2.5e-79 292.0
Blo02g00887 . 38 182 Core DNA Replication Machinery Family AT3G12530 70.3 1.8e-58 222.2
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT1G19080 65.1 1.4e-60 229.6
Blo13g00859 CCT 479 644 Core DNA Replication Machinery Family AT3G55490 65.1 1.4e-60 229.6
Blo04g01050 . 1 1612 Core DNA Replication Machinery Family AT5G67100 56.9 0.0e+00 1704.5
Blo06g00822 . 130 744 Core DNA Replication Machinery Family AT1G67630 55.8 1.0e-195 680.2
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo05g00533 . 4 861 Core DNA Replication Machinery Family AT5G63960 75.7 0.0e+00 1338.9
Blo07g01274 . 71 477 Core DNA Replication Machinery Family AT2G42120 68.8 1.4e-170 596.3
Blo01g00167 . 1 435 Core DNA Replication Machinery Family AT1G67320 64.3 1.7e-182 636.0
Blo14g00223 . 3 2123 Core DNA Replication Machinery Family AT1G08260 68.5 0.0e+00 2870.5
Blo14g00223 . 9 2238 Core DNA Replication Machinery Family AT2G27120 65.4 0.0e+00 2850.5
Blo15g00024 . 19 464 Core DNA Replication Machinery Family AT5G22110 69.5 1.2e-178 623.2
Blo08g00066 . 388 1290 Core DNA Replication Machinery Family AT5G22010 66.4 4.3e-304 1040.8
Blo02g01098 . 3 355 Core DNA Replication Machinery Family AT1G63160 83.9 3.1e-167 584.7
Blo11g00085 . 1 339 Core DNA Replication Machinery Family AT5G27740 79.4 2.7e-153 538.5
Blo12g01123 . 26 352 Core DNA Replication Machinery Family AT1G21690 79.6 9.7e-145 510.0
Blo18g00180 . 1 362 Core DNA Replication Machinery Family AT1G77470 78.1 2.9e-158 555.1
Blo16g00969 . 26 615 Core DNA Replication Machinery Family AT2G06510 68.9 1.5e-247 852.4
Blo03g00091 . 34 725 Core DNA Replication Machinery Family AT2G06510 50.5 1.3e-198 689.9
Blo06g01214 . 1 625 Core DNA Replication Machinery Family AT5G08020 67.1 1.3e-243 839.3
Blo15g00339 . 1 634 Core DNA Replication Machinery Family AT5G08020 65.7 8.5e-240 826.6
Blo06g01214 . 1 619 Core DNA Replication Machinery Family AT5G61000 66.3 1.4e-240 829.3
Blo15g00339 . 1 628 Core DNA Replication Machinery Family AT5G61000 65.8 5.2e-240 827.4
Blo03g00091 . 8 853 Core DNA Replication Machinery Family AT4G19130 51.3 4.1e-226 781.6
Blo18g00682 . 169 531 Core DNA Replication Machinery Family AT5G26680 84.0 1.0e-175 613.2
Blo13g00680 . 255 540 Core DNA Replication Machinery Family AT2G25100 68.5 3.4e-111 398.3
Blo08g00019 . 2 784 Core DNA Replication Machinery Family AT1G08130 67.2 3.6e-291 997.7
Blo08g00019 . 160 784 Core DNA Replication Machinery Family AT1G49250 65.5 3.7e-233 804.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008086 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01396 Blo_Chr03 FPKM 6.463505 8.366733 5.426176 5.017725 2.715433 3.273655 3.948882 4.496783 4.686363 4.261807