Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01398 ATGGAAGGAAATTCCGGTGTTGGTGGTGGAGGAAGTGGCGGCGGCGGAGGGAACGACGTTGACCTGATGTGCAAGACGCTGCAGGTGGAGCACAAGCTGTTCTACTTTGATCTCAAGGAGAATCCGAGAGGACGTTACCTCAAAATATCTGAGAAGACATCGGCTACGAGGTCAACCATCATCGTCCCTTTCTCTGGCATTTCGTGGTTCATCGATCTCTTCAATTACTACATCAATTCCGACGACCAGGATATTTTCAGCAAAGAATTACAGCTCGATTCTAAGGTATTTTTCTTTGACATTGGGGAGAACAGAAGAGGCCGCTTCTTGAAGGTATTATTGGGTTGGCTTTTTGTCGTAATTTTGATGAAAGTTTTCTTATCGCATTGTGTGTCAGAAGCTTCTGTTAGCAGACATCGCAGTACGATCATCGTTCCTGCAGGAAGTAACCGGGAAGATGGGTGGACTGCATTCAAGAACATCTTAGTGGATATCAACGAAGCATCTAGGCTTTATATACTTCCCAATCAGCAAGATTCTGAGCCTCCGGAACACCTAGTTGGGCTTACCGATGATGCAGGGGCTGGCTTCATATCAGGCCATGGTAATCAATCTGCCGTAACTTCTGATTTGAATGTGGACAGGCAAATTGAATTGCCAGATCATGACGATATTAATAACTTGGGGATCTCAAAAGTATTCAGAGTCGACCAAAAGAGATTTTTCTTTGATCTTGGGAGCAACAACAGGGGTCATTTCTTGAGGATTTCCGAGTCACATCTACGTTTCTTCTCGGAGCTTTCTTTAAATGGAGATTTGGGTTTTTGCAGGAATGGAATTCAGCACAGGAAGAACTCATGGCAAGACGGAGTCCCTGGAACCAACTGCCCGATTCTGCCGGGTACCAACTACACCTACCATTTTCAGGTGAAGGATCAGATCGGAAGCTATTTCTACTATCCTTCAACCGCCGTCCACCGTGCCTCCGGCGGATTCGGTGGTCTTCGTGTAAACAGCCGTCTTCTCATCCCAGTCCCGTACGCCGACCCGGAAGACGAGTACACCGTCCTGATGGGCGACTGGTACATCAAGGGCCACACCGTCCTCAAGAAATTGTTGGACAGCGGCCGATCAATAGGCCGACCTGACGGTGTTCTCATCAACGGTAAGAACGCCAAGGGCGACGGCAAAGACGAGCCGCTCTTCACCATGAAGCCTGGAAAGACGTACAAGTACAGAGTCTGCAACGTCGGATTGAAAACTTCAGTTAACTTCAGAATTCAAGGCCATACCTTGAAGCTCGTGGAAATGGAGGGTTCTCACGTCGTTCAGAACGTTTATGAATCTCTCGACGTTCATGTCGGACAGTGCTTCTCACTCCTCGTTACCGCCAACCAAGATCCTAAGGATTACTATATGGTCGCTTCCACTCGATTCACCAAGAATGTCCTCACCGGCAAAGGAATTATCCGGTACACCAACAGCAAAGGTGCCCCTGCATCTCCGGTCATCCCCCCAGCTCCGGTCGGTTGGGCCTGGTCTCTCAATCAGTTCCGATCCTTCCGATGGAACCTCACCGCCTCCGCTGCCAGACCTAACCCTCAAGGATCGTACCACTACGGTTCCATCAACATTACCCGCACCATCAAGCTCGTGAACTCTGCCAGCAGAGCCGGCGGAAAGCTTCGTTATGCTATCAATGGCGTCTCTCACGTCGACCCAGCTACCCCGCTGAAACTCGCTGAGTACTTCGGCGTCTCCGACAAATTCTTCCAATACGACACCATCTCCGACGACGCTAAAGAAACTTCTGCCATCTCGGCTGCCGCTCCTAAGATCACTCCCAATGTTGTAAATGCCACCTTCCGTAACTTCACCCTCTTCCATCCGCCATTAATAACTAATCTCCAAACACCAAATTTTCAAATTCCACTTCCATTTCTGACAAATCTCGATCTTTTTTCACGCAGAGTTGAGCACGGTAAATGGAGCCCAGCAAAGAGAAGCAACTACAACCTTCTCGACGCAGTGAGCAGGCACACAGTCCAGGTCTACCCAAAATCATGGGCAGCCATTCTTCTGACGTTCGACAACGCCGGAATGTGGAACTTGCGATCAGAGCTGACAGAGAACAGGTACCTCGGACAGCAGATGTACGTCAGTGTTCTGTCTCCGGCTCGATCACTGAGAGACGAATACAACATTCCAGACAACACCTTGCTGTGTGGATCAGTGGTTGGACTGCCCAAACCTCCTCCATACACCATATAA 2271 49.23 MEGNSGVGGGGSGGGGGNDVDLMCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFIDLFNYYINSDDQDIFSKELQLDSKVFFFDIGENRRGRFLKVLLGWLFVVILMKVFLSHCVSEASVSRHRSTIIVPAGSNREDGWTAFKNILVDINEASRLYILPNQQDSEPPEHLVGLTDDAGAGFISGHGNQSAVTSDLNVDRQIELPDHDDINNLGISKVFRVDQKRFFFDLGSNNRGHFLRISESHLRFFSELSLNGDLGFCRNGIQHRKNSWQDGVPGTNCPILPGTNYTYHFQVKDQIGSYFYYPSTAVHRASGGFGGLRVNSRLLIPVPYADPEDEYTVLMGDWYIKGHTVLKKLLDSGRSIGRPDGVLINGKNAKGDGKDEPLFTMKPGKTYKYRVCNVGLKTSVNFRIQGHTLKLVEMEGSHVVQNVYESLDVHVGQCFSLLVTANQDPKDYYMVASTRFTKNVLTGKGIIRYTNSKGAPASPVIPPAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGSINITRTIKLVNSASRAGGKLRYAINGVSHVDPATPLKLAEYFGVSDKFFQYDTISDDAKETSAISAAAPKITPNVVNATFRNFTLFHPPLITNLQTPNFQIPLPFLTNLDLFSRRVEHGKWSPAKRSNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNLRSELTENRYLGQQMYVSVLSPARSLRDEYNIPDNTLLCGSVVGLPKPPPYTI 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40477939 40485215 + BLOR12579 Blo03g01398 58862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01398 756 Gene3D - 350 531 IPR008972 -
Blo03g01398 756 SUPERFAMILY Cupredoxins 543 745 IPR008972 -
Blo03g01398 756 Pfam Multicopper oxidase 353 494 IPR001117 -
Blo03g01398 756 SUPERFAMILY Cupredoxins 272 369 IPR008972 -
Blo03g01398 756 CDD CuRO_2_AAO_like_1 352 492 IPR034271 -
Blo03g01398 756 Gene3D - 541 747 IPR008972 -
Blo03g01398 756 Pfam PurA ssDNA and RNA-binding protein 222 260 IPR006628 GO:0000977|GO:0032422
Blo03g01398 756 Pfam PurA ssDNA and RNA-binding protein 25 79 IPR006628 GO:0000977|GO:0032422
Blo03g01398 756 Pfam Multicopper oxidase 659 724 IPR011706 GO:0005507|GO:0016491
Blo03g01398 756 Pfam Multicopper oxidase 278 340 IPR011707 GO:0005507
Blo03g01398 756 SMART pur 84 170 IPR006628 GO:0000977|GO:0032422
Blo03g01398 756 SMART pur 228 288 IPR006628 GO:0000977|GO:0032422
Blo03g01398 756 SMART pur 21 82 IPR006628 GO:0000977|GO:0032422
Blo03g01398 756 Gene3D - 11 80 - -
Blo03g01398 756 SUPERFAMILY Cupredoxins 349 532 IPR008972 -
Blo03g01398 756 PANTHER L-ASCORBATE OXIDASE-LIKE PROTEIN 272 747 - -
Blo03g01398 756 Gene3D - 265 339 IPR008972 -
Blo03g01398 756 PANTHER MULTI-COPPER OXIDASE 272 747 IPR045087 -
Blo03g01398 756 Gene3D - 81 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01398 K00423 E1.10.3.3; L-ascorbate oxidase [EC:1.10.3.3] - csv:116403253 765.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01398 Blo-Chr3:40477939 Blo04g00593 Blo-Chr4:5098059 6.91E-163 dispersed
Blo03g00954 Blo-Chr3:35574985 Blo03g01398 Blo-Chr3:40477939 1.16E-08 transposed
Blo03g00953 Blo-Chr3:35569930 Blo03g01398 Blo-Chr3:40477939 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g5 . Blo03g01398 . . . . Bma14g00742 Bma07g01371 Cmo10g00829 Cmo11g00777 Cma10g00802 . . . . . Cpe18g00278 Bhi02g01439 Tan09g0742 . . . . . . . . . . . . . Cone5ag1410 . . Lsi06g00378 . . . . . Bda07g00772 Bda09g00340 . Bpe11g00947 Bma07g00328 . . . . Cma11g00768 . . . . Cpe04g00992 . . . . . . . Cla03g01411 Cam03g1491 Cec03g1529 Cco03g1523 Clacu03g1514 Cmu03g2071 Cre03g1743 . Csa01g03033 Chy02g01313 Cme02g00345
Vvi6g924 . Blo03g01398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01398 Blo_Chr03 FPKM 0.689655 0.344992 0.211948 0.0 0.208596 0.0 0.0 0.0 0.0 0.0