Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01424 ATGAGCAACACACTTCGGATACTTGTTGCAACAGATTGCCATCTTGGCTATATGGAGAAGGATGAAATACGCCGCCATGATTCTTTCCAGGCATTTGAAGAGATTTGCTCAATTGCAGAGCAAAAGCAGGTGGATTTCTTGCTTTTAGGTGGTGACCTTTTCCATGAGAACAAGCCCTCGCGATCAACATTAGTCAAGACTATTGAGATTCTCCGTACTCATTGCCTCAATGATCAGCCAGTGCAGTTCCAAGTTGTTAGCGACCAAACTATCAATTTTCCTAATACATTTGGTCATGTAAATTATGAAGATGCTCACTTCAATGTTGGTTTGCCAGTGTTCAGTATTCATGGAAATCATGATGATCCTGCTGGAGTGATACAGCGTTTTAGTCCATTACGTTCCTCAATTTGGTTGGAAGCATATCTTATGGCAGTTGTTTTTATAAACTATGAGGACAACCTTTCAGCGGTTGATATTCTTTCAGCATGCAATCTTGTGAACTACTTTGGAAAAATGGCTCTTGGGGGTTCTGGTGTTGGCCAGATTGCTCTCTACCCTATACTTATCAGGAAGGGTTCAACAGCTGTAGCACTTTACGGACTTGGGAACATTAGAGATGAGCGGCTTAATAGAATGTTCCAGACTCCACATGCTGTTCAATGGATGCGGGCTGAAGCTCAAGAAGGTTGCCAAGTCACTGACTGGTTCAACATTCTGGTACTTCATCAAAACAGAGTAAAGTCAAATCCCAAGAATGCAATAAATGAGCATTTTTTACCTCGCTTCCTGGACTTCATTGTATGGGGACATGAACACGAGTGCCTTGTTGACCCTCAGGAAGTTCCAGGGATGGGATTTCACATTACACAACCAGGCTCTTCAGTTGCAACCTCTCTGATTGATGGAGAATCAAAACCTAAGCATGTTCTTCTGTTAGAAATTAAGGGGAGCCAGTATCGGCCAACCAAGATACCTTTGACATCCGTGAGGCCATTTGAATACACAGAAATAGTATTGAAGGATGAATCTGAAATTGATCCCAATGATCAGAACGCAATTCTTGAACACTTGGACAGAGTGGTCAGAAATCTCATAGACAAATCTAAAAAAAGGGCTGTCAAAATATCAGAAATGAAGCTTCCACTAATCCGTATAAAGGTTGATTACACTGGTTTCATGACAATTAATCCGCAAAGATTTGGTCAGAAGTATGTCGGGAAGGTTGCAAACCCTCAAGACATTCTTATATTCTCCAAGGCATCAAGAAAAGGTCGAAATGAAGCTAAAATTGACGAGTCTGAACGTCTTCGGCCAGAAGAACTCAATCAACAAAACATAGAGGCATTGGTTGCTGAAAGTAATCTGAAAATGGAGATTCTTCCTGTCAATGATCTAGATGTTGCATTACACAACTTTGTTAACAAGGATGATAAAATGGCCTTTTATTCTTGTTTACAATACAACCTATCAGAAACACGAAACAAAATCTCCCGCGATGCAGAGTCATTGAAAGTTGACGAGGAAGATCTGATTCTTAAAGTTGGAGAGTGCTTGGAGGAAAGTATATTTTTTCACCGTTCAGCTAGTCATCATGTCTCATGGATCTACAGACTACTTGATCGTGTTAAGGAGAGGTCTTCACGCTCAAAGGATGCATTGCCATTCACATCTAATTCGTCAGAAGATTTCAGAAGTGCTTCTGGTACCGGAACTACGGTTTCCTTTAGTGATGATGAAGACACGAATCACGCATCTGGCTCAAAGTCTACAACTAGAGTCAGTAAAGGATCTTCTCTACCTGCACCTGATGTTCCTGGAGGAGGTAGAACCTCTACAAGAGGAAGGGGAAGAGGCAGGGGGTCCAATAACTTGAAGCAGACAACTCTTGATGCAGCTTTGAATTTTCGCCCATCTCAGAGAACCGCCTCAATTGCTGCAACAACCATCAATAGGAGTTTAACAGTGGAAGATGAGGAAAATATGAATTCTCCTTCGAGTGAAGAAGCAAATCAAAATGAAGTTGAAGAAATTAATGACAGTTCGGAAAATGATGAAAGGTCAGGTCGAGGGCGCAAAAGACCAGCTCCAAGAGGAAGAGGGAGAGGTAGAGGTAGAGGTTTTACACAGTCTAAAAGAGGAAAGAAATCAGACAGCTCCCCTGCTCCAAAAAAGTTCATGAGCAAATATGACCATTCAGATGATGATGATGATGACGACGACAACGCCAGACCAAAGCTATTAAACAAGTCTCAAACCCAGGTAACGAGAAATTACGGCGCACTAAGAAGAGTGAAGTATTTGGGGCCATTTTCAGCTCAGACGCCGTCATATCTCACCGGCGAATTTCCCGGCGACTATGGTTGGGACACTGCCGGGCTATCTGCCGATCCAGAGGCATTTGCCAAGAACAGAGCACTTGAGGTAATCCATGGGAGGTGGGCAATGCTCGGAGCTCTCGGCTGCATAACCCCAGAAGTCCTTGAAAAATGGGTCAAAGTAGACTTCAAAGAGCCAGTCTGGTTCAAAGCAGGATCCCAAATCTTCACAGAAGGAGGATTGGACTATCTGGGAAACCCTAATCTTGTTCATGCTCAAAGCATCCTAGCAGTTCTAGGCTTCCAAGTAATTCTAATGGGTCTGGTCGAAGGTTACCGCATCAATGGCTTAGATGGAGTAGGAGAGGGAAATGACCTTTACCCAGGCGGCCAATACTTTGACCCACTTGGTCTGGCCGATGATCCCCCCACTTTTGCAGAGCTTAAAGTCAAAGAAATCAAAAATGGCCGCCTGGCAATGTTCTCCATGTTTGGATTCTTTGTCCAAGCCATTGTTACAGGAAAAGGTCCCCTAGAGAACCTCTTGGATCACCTCGATAACCCAGTTGCTAATAATGCATGGGTCTATGCTACAAAATTTGCACCAGGATCATAA 2934 43.15 MSNTLRILVATDCHLGYMEKDEIRRHDSFQAFEEICSIAEQKQVDFLLLGGDLFHENKPSRSTLVKTIEILRTHCLNDQPVQFQVVSDQTINFPNTFGHVNYEDAHFNVGLPVFSIHGNHDDPAGVIQRFSPLRSSIWLEAYLMAVVFINYEDNLSAVDILSACNLVNYFGKMALGGSGVGQIALYPILIRKGSTAVALYGLGNIRDERLNRMFQTPHAVQWMRAEAQEGCQVTDWFNILVLHQNRVKSNPKNAINEHFLPRFLDFIVWGHEHECLVDPQEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGSQYRPTKIPLTSVRPFEYTEIVLKDESEIDPNDQNAILEHLDRVVRNLIDKSKKRAVKISEMKLPLIRIKVDYTGFMTINPQRFGQKYVGKVANPQDILIFSKASRKGRNEAKIDESERLRPEELNQQNIEALVAESNLKMEILPVNDLDVALHNFVNKDDKMAFYSCLQYNLSETRNKISRDAESLKVDEEDLILKVGECLEESIFFHRSASHHVSWIYRLLDRVKERSSRSKDALPFTSNSSEDFRSASGTGTTVSFSDDEDTNHASGSKSTTRVSKGSSLPAPDVPGGGRTSTRGRGRGRGSNNLKQTTLDAALNFRPSQRTASIAATTINRSLTVEDEENMNSPSSEEANQNEVEEINDSSENDERSGRGRKRPAPRGRGRGRGRGFTQSKRGKKSDSSPAPKKFMSKYDHSDDDDDDDDNARPKLLNKSQTQVTRNYGALRRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPPTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40809988 40819189 - BLOR12605 Blo03g01424 58888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01424 977 MobiDBLite consensus disorder prediction 693 710 - -
Blo03g01424 977 MobiDBLite consensus disorder prediction 616 672 - -
Blo03g01424 977 MobiDBLite consensus disorder prediction 550 755 - -
Blo03g01424 977 Gene3D Mre11, capping domain 332 430 IPR038487 -
Blo03g01424 977 Pfam Calcineurin-like phosphoesterase 5 275 IPR004843 GO:0016787
Blo03g01424 977 Gene3D - 2 331 IPR029052 -
Blo03g01424 977 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 2 736 - -
Blo03g01424 977 MobiDBLite consensus disorder prediction 711 732 - -
Blo03g01424 977 MobiDBLite consensus disorder prediction 552 598 - -
Blo03g01424 977 CDD MPP_Mre11_N 6 300 IPR041796 -
Blo03g01424 977 Gene3D Chlorophyll a/b binding protein domain 766 970 - -
Blo03g01424 977 Pfam Mre11 DNA-binding presumed domain 321 473 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Blo03g01424 977 Pfam Chlorophyll A-B binding protein 776 943 IPR022796 -
Blo03g01424 977 SUPERFAMILY Metallo-dependent phosphatases 5 371 IPR029052 -
Blo03g01424 977 SUPERFAMILY Chlorophyll a-b binding protein 764 974 - -
Blo03g01424 977 SMART Mre11_DNA_bind_2 320 473 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01424 Blo-Chr3:40809988 Blo14g00842 Blo-Chr14:30800478 7.59E-110 dispersed
Blo03g01424 Blo-Chr3:40809988 Blo15g00451 Blo-Chr15:6642911 4.87E-113 transposed
Blo03g01424 Blo-Chr3:40809988 Blo02g00138 Blo-Chr2:1181364 5.80E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01424 K10865 - qsu:111984229 1096.65