Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01431 ATGCTTACCAACCCCTACTTCGCTCAAAAAACCCTGATTCCATTGCCAAGGCAGTCGATTTTTCAGAATTTCAAGCTCCCCCAGTCCCTCTGCCTCAACTCAGCGAGCCAGATTCCGATTCGTCGAGCTCCTTCCCGCGCTCGAGCAGATTTTTCAGTGCGAGCGGCGTTGGATAGCGATTACTCGTTGAAGAGAAGCAGCAGCAATGAGCAGAGGGAGACGATAATGATACCGGGTTGTGAGTACAATCACTGGCTTATCGTCATGGAATTCCGCAAAGACCCTGCCCCTACTAGAGAGCAGATGATCGATACTTATCTCAATACTCTCGCTACTGTTTTGGGAAGGCTCTCTCTTTCTCTGCTGCTTTCAAGAAAATCTCTAACATGGTATGCTTTTAGCACAACCACATACACTGGATTCCAGTGCACTGTATCAGAAGAAACATCTGAAAAATTTAAAGGATTGCCTGGAGTTATTTGGGTTTTACCAGATTCATACATTGATGTTCAAAACAAGGACTACGGAGCTCATATGTTTTCAGGCCTTAGTAAACGTACGACTACAGAGAAGCTGCACGAAGCCTTTGCTCAGTTTGGTGAAGTTCGTCAGGCTAGAGTGGTGACAGATCGAGTGACAGGATATTCTAAGGGTTTTGGCTTTGTTAATTATGCTACTCTGGAAGATGCTGCAAAAGGCATAGAGGGAATGGATGGGAAGTTTTTGGATGGTTGGGTTATATTCGCCGAGTACTCAAGACCGAGAGCGCCAGTGAACCGACCCGAGGGCAGGATATCTACTCCATACGGTAACAGATAA 819 46.15 MLTNPYFAQKTLIPLPRQSIFQNFKLPQSLCLNSASQIPIRRAPSRARADFSVRAALDSDYSLKRSSSNEQRETIMIPGCEYNHWLIVMEFRKDPAPTREQMIDTYLNTLATVLGRLSLSLLLSRKSLTWYAFSTTTYTGFQCTVSEETSEKFKGLPGVIWVLPDSYIDVQNKDYGAHMFSGLSKRTTTEKLHEAFAQFGEVRQARVVTDRVTGYSKGFGFVNYATLEDAAKGIEGMDGKFLDGWVIFAEYSRPRAPVNRPEGRISTPYGNR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40894324 40901947 + BLOR12612 Blo03g01431 58895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01431 272 Gene3D - 173 261 IPR012677 -
Blo03g01431 272 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 34 178 IPR039206 GO:0016554
Blo03g01431 272 SMART rrm1_1 177 250 IPR000504 GO:0003723
Blo03g01431 272 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 9, CHLOROPLASTIC 34 178 - -
Blo03g01431 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 254 IPR000504 GO:0003723
Blo03g01431 272 SUPERFAMILY RNA-binding domain, RBD 181 268 IPR035979 GO:0003676
Blo03g01431 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 244 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01431 - - - csv:101218653 224.942
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01431 Blo-Chr3:40894324 Blo12g00141 Blo-Chr12:9913032 2.72E-28 dispersed
Blo07g01187 Blo-Chr7:31713251 Blo03g01431 Blo-Chr3:40894324 3.55E-25 dispersed
Blo03g00601 Blo-Chr3:23990195 Blo03g01431 Blo-Chr3:40894324 2.32E-38 transposed
Blo13g00083 Blo-Chr13:1299725 Blo03g01431 Blo-Chr3:40894324 5.15E-22 transposed
Blo03g00597 Blo-Chr3:23776719 Blo03g01431 Blo-Chr3:40894324 7.09E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g388 . Blo03g01431 . . . . . . . . Cma01g01168 Cma09g00911 . Car09g00827 Sed07g2638 Cpe06g00732 . Bhi09g01970 Tan01g4478 Cmetu10g0573 . Hepe01g1331 Mch11g1130 . . . . . . . . . . . . Lsi04g01262 . Chy04g01042 . . . . . . . . Bma14g00369 . Cmo01g01223 Cmo09g00904 . . . Car16g00581 . . . . . . . . . Cla05g01560 Cam05g1667 Cec05g1672 Cco05g1714 Clacu05g1662 Cmu05g1555 Cre05g1668 . . . Cme04g00765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009391 0 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01431 Blo_Chr03 FPKM 7.303257 7.863426 7.899614 8.324081 15.727115 16.051271 14.78383 2.746169 2.298647 2.542567