Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01433 ATGCTGCAGGTGGAGATGTTACTGATCAATCGCAACCGAGACTTGACAGTTTTGAAAGAAGCTGTTGATAGGCTTGATATGTGCTTGCCGAAGGACGGGTTGGACACGATCAATTTAGATCGTCTCTCATCGGCTAAAGAAACTATTCGGAGGGTGTTTAGTAAACTTCATTTTCAGGCAAAGACAACTCTTTTAGATTGTTTAGGAATTAACACTCCATTACTTCATACCTTTGAAGAAGAAGACAATGGCTTCTCACCCTTTCCCAAACTCGAGATTAGAAGAAAAAATTTAGGCGCTAGACTGCTTCAAAGCATTGCAGAAGTGCCTGCGCCTTCATTTTTCGAGTCGCCACTTTCTAGTCTTGAAATTTCTCCAAATCTTTCTGCAAGTCCAACTTCTGGTGCAAATGCCCCAGCTGAGAAGAAAGGAAAGAACTATAAACCCATCGTTATAGCTGTTGCCATTACAGCTTCAGTGACATTTGTCGTCGTGGGACTGCTATTTCTGAGCTGTTATAAATGTTGTAAGGGGCGAAATGACGATAGGCCTCTTCTTAGCTTGAGCAAGACGGACTTCTCTGTTGGTGGTTCGCTGAATTTCTTTGCCTATGGCAGTCCAGTTAAAGACGGGAAATTGGAGTTGCAGTCAAATATCTCAAAATATTTTGATAGTAGTTGCCAAATTGAGTCGAATTTTCGCACTTCAGTTCGAGATTTCGATTTGAATGGAGCCTCTGGATGTGTCAGTAAATCAAACATGGAATTTAATGAACAAGTAATGCCTACTTTGAAGCCCCCCACTGGAAGATTAAATGCTTCTTCTTTCAAGATTCCTAGTAAGGTTGGTCCTCCACCACCACCTCTGGAACAACCTCCACGTCAGCCTGCTGCACCATCTCCGCCTCCGCCTCCAGCACCACCACCAGTGCCACCTCCGGTGAACGTTGGCCGACCACCTGGACATCCTCCGATGCCTCCACCTGGACCTACTGGGAAGGCTGGTCCTCGCACTCCACCACCACCACCGCCACCAGAAAGTGGCAGTGTTCCTCCTCGTCCACCTCAACCAATCTCTCTGGGTTCTAATGCGGCTCGACCTTCAAAACCTCCATCAAATCCTGTGGAAAATGATTCAGATGCTCCCAAAGCCAAACTCAAGCCATTTTTCTGGGACAAAGTACTAGCTAACCCTGGTCATTCAATGGTCTGGCATCAAATTAAGTCAGGATCATTCCAATTCAACGAAGAAATGATAGAAACTCTTTTCGGGTATACTCCTGTTGATAAAAACAAAAAAAAACAGAAGAAAGAGTCTGCTTCAAATGATGCTTCCACTCATTATATTCAGATCATCGATTCAAAAAAAGCACAAAATCTATCAATTCTTCTGCGGGCATTAAATGTGACAAAAGAAGAAATTTGCAATGCAATCACAGAAGGGAACGAACTCCATGCTGAGCTTATACATAATTTATTGAAAATGGCGCCAACGGCGGAAGAAGAACTGAAATTGAGGCTCTTCAATGGCGAAGTTTCTCAACTTGGTCCGGCCGATCGATTCTTGAAAGCCTTGGTTGACATCCCGTTTGCTTTCAAACAGTTGGAAGCTTTACATTTCATGTGCACTCTTCAGGAGGATTTGACCACCATTAAAGGGTCATTTACTTCGTTGGAGGTTGCCTGCCAAGAACTCCAAGACAGCAGGCTGTTCCTCAAACTCTTAGAGGCAGTTCTTAAAACTGGAAATCGTATGAACGATGGAACCTTTCGAGGAGGGGCACAAGCTTTCAAACTCGACACCCTTTTAAAGTTGTCCGATGTGAAAGGAACGGATGGGAAGACAACGCTCTTGCTGTTTGTCGTTCAGGAGATAATTCGCTCTGAAGGCATTCGAGCTGCTCGGGCTGGCACCAAATTGAACAACTCAATCGATGAAGCTTCTCTCAACTTGGAGGATCACAACAGAAGCCTTGGTCTCCAGGTCATATCGTGTCTGGGAAATGAGCTGGAGAACGTGAAGAGGGCAGCTGCCATCGATTTGGACGGCCTAAGAAGATCGGTAGCTAAACTCGGCCAGGATTTGGTAAAAACCCGAGAATTTCTTAATACTGACATGAAGAATATCAACGAAAATAGTGGATTCTACAGAACATTGAAGAGCTTTGTGCAGGATGCTGAAGTTGATATTACGACGATCGTTGAAGAAGAAAATAGGATTATGGATCTAGTTAAGCGAACAGGCAGTTACTTCCATGGGAAAGCCGGAGAAGATGAGGGACTGCGATTGTTTCTCATTGTCCGCGATTTTTTGATTATGGTCGATAAAGCATGTAAGGAAGTGAGAGAAGCACCTATAAAAGCACATAAAAAGGCAGCTTTGCCTGATATTCAAGGGCCTCCATCATCATCAATGCTCTCCGACCTTAATTTGAGGCTTTTTCCAGCAATCCAAGAGCAAAGAATGGACAATTCTAGCTCAGATGAGAAGAGCCCGTAG 2499 44.22 MLQVEMLLINRNRDLTVLKEAVDRLDMCLPKDGLDTINLDRLSSAKETIRRVFSKLHFQAKTTLLDCLGINTPLLHTFEEEDNGFSPFPKLEIRRKNLGARLLQSIAEVPAPSFFESPLSSLEISPNLSASPTSGANAPAEKKGKNYKPIVIAVAITASVTFVVVGLLFLSCYKCCKGRNDDRPLLSLSKTDFSVGGSLNFFAYGSPVKDGKLELQSNISKYFDSSCQIESNFRTSVRDFDLNGASGCVSKSNMEFNEQVMPTLKPPTGRLNASSFKIPSKVGPPPPPLEQPPRQPAAPSPPPPPAPPPVPPPVNVGRPPGHPPMPPPGPTGKAGPRTPPPPPPPESGSVPPRPPQPISLGSNAARPSKPPSNPVENDSDAPKAKLKPFFWDKVLANPGHSMVWHQIKSGSFQFNEEMIETLFGYTPVDKNKKKQKKESASNDASTHYIQIIDSKKAQNLSILLRALNVTKEEICNAITEGNELHAELIHNLLKMAPTAEEELKLRLFNGEVSQLGPADRFLKALVDIPFAFKQLEALHFMCTLQEDLTTIKGSFTSLEVACQELQDSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLLFVVQEIIRSEGIRAARAGTKLNNSIDEASLNLEDHNRSLGLQVISCLGNELENVKRAAAIDLDGLRRSVAKLGQDLVKTREFLNTDMKNINENSGFYRTLKSFVQDAEVDITTIVEEENRIMDLVKRTGSYFHGKAGEDEGLRLFLIVRDFLIMVDKACKEVREAPIKAHKKAALPDIQGPPSSSMLSDLNLRLFPAIQEQRMDNSSSDEKSP 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40920138 40923110 - BLOR12614 Blo03g01433 58897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01433 832 MobiDBLite consensus disorder prediction 280 358 - -
Blo03g01433 832 Pfam Formin Homology 2 Domain 378 774 IPR015425 -
Blo03g01433 832 MobiDBLite consensus disorder prediction 261 383 - -
Blo03g01433 832 PANTHER FORMIN-RELATED 311 830 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Blo03g01433 832 PANTHER FORMIN-LIKE PROTEIN 3 311 830 - -
Blo03g01433 832 PANTHER FORMIN-LIKE PROTEIN 3 132 313 - -
Blo03g01433 832 Gene3D Formin, FH2 domain 381 795 IPR042201 -
Blo03g01433 832 SUPERFAMILY Formin homology 2 domain (FH2 domain) 448 791 - -
Blo03g01433 832 MobiDBLite consensus disorder prediction 361 375 - -
Blo03g01433 832 ProSiteProfiles Formin homology-2 (FH2) domain profile. 376 800 IPR015425 -
Blo03g01433 832 SMART it6_source 376 789 IPR015425 -
Blo03g01433 832 PANTHER FORMIN-RELATED 132 313 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01433 - - - jre:109014354 652.514
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g01433 Blo03g00585 ECH
Blo03g00585 Blo03g01433 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00105 Blo-Chr2:748766 Blo03g01433 Blo-Chr3:40920138 0 dispersed
Blo03g01433 Blo-Chr3:40920138 Blo04g01082 Blo-Chr4:16245411 7.37E-116 dispersed
Blo15g00519 Blo-Chr15:9407280 Blo03g01433 Blo-Chr3:40920138 0 wgd
Blo03g00585 Blo-Chr3:22946758 Blo03g01433 Blo-Chr3:40920138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g01082 BCT 431 866 FH2 protein (formin) Gene Family AT3G25500 59.9 4.4e-135 479.6
Blo16g00351 BCT 424 863 FH2 protein (formin) Gene Family AT3G25500 59.5 3.5e-132 469.9
Blo17g00642 . 489 889 FH2 protein (formin) Gene Family AT3G25500 51.0 1.5e-95 348.2
Blo04g01082 BCT 435 878 FH2 protein (formin) Gene Family AT2G43800 54.5 1.0e-124 444.9
Blo16g00351 BCT 447 891 FH2 protein (formin) Gene Family AT2G43800 54.2 6.6e-124 442.2
Blo15g00519 BCT 265 551 FH2 protein (formin) Gene Family AT4G15200 56.4 3.8e-62 236.1
Blo03g00585 BCT,ECH 544 690 FH2 protein (formin) Gene Family AT4G15200 64.2 7.6e-47 185.3
Blo03g01433 BCT,ECH 372 517 FH2 protein (formin) Gene Family AT4G15200 61.9 4.9e-46 182.6
Blo15g00519 BCT 409 871 FH2 protein (formin) Gene Family AT5G54650 65.1 2.3e-164 576.6
Blo02g00105 BCT 260 857 FH2 protein (formin) Gene Family AT5G54650 52.0 1.0e-156 551.2
Blo03g01433 BCT,ECH 378 828 FH2 protein (formin) Gene Family AT5G54650 62.9 6.2e-154 542.0
Blo04g01082 BCT 26 885 FH2 protein (formin) Gene Family AT5G67470 54.4 2.4e-222 769.2
Blo16g00351 BCT 26 892 FH2 protein (formin) Gene Family AT5G67470 54.2 3.7e-207 718.8
Blo11g01006 . 486 904 FH2 protein (formin) Gene Family AT5G67470 62.1 6.2e-130 462.2
Blo11g00885 . 465 932 FH2 protein (formin) Gene Family AT1G59910 51.4 6.7e-119 425.6
Blo11g00885 . 305 932 FH2 protein (formin) Gene Family AT1G70140 50.1 2.4e-143 506.5
Blo16g00351 BCT 452 848 FH2 protein (formin) Gene Family AT3G05470 51.5 7.6e-104 375.6
Blo19g00153 . 881 1049 FH2 protein (formin) Gene Family AT1G42980 54.1 3.8e-39 159.1
Blo19g00153 . 1 1060 FH2 protein (formin) Gene Family AT1G31810 60.4 6.0e-285 977.6
Blo16g00180 BCT 126 539 FH2 protein (formin) Gene Family AT1G31810 64.7 1.1e-140 498.4
Blo16g00179 BCT 704 1083 FH2 protein (formin) Gene Family AT1G31810 52.0 1.6e-115 414.8
Blo19g00154 . 104 230 FH2 protein (formin) Gene Family AT1G31810 78.7 1.1e-49 196.1
Blo04g00779 BCT 37 193 FH2 protein (formin) Gene Family AT1G31810 59.2 5.3e-39 160.6
Blo16g00180 BCT 209 530 FH2 protein (formin) Gene Family AT5G07650 74.8 7.2e-130 461.8
Blo12g01054 . 920 1224 FH2 protein (formin) Gene Family AT5G07650 61.5 4.4e-103 372.9
Blo17g00002 . 1382 1705 FH2 protein (formin) Gene Family AT5G07650 57.5 2.4e-101 367.1
Blo08g00524 . 818 1110 FH2 protein (formin) Gene Family AT5G07650 51.3 5.0e-75 279.6
Blo04g00781 BCT 1807 1981 FH2 protein (formin) Gene Family AT5G07650 78.9 1.4e-72 271.6
Blo19g00153 . 865 1049 FH2 protein (formin) Gene Family AT5G07650 60.0 2.1e-60 231.1
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT5G07650 66.2 2.9e-46 184.1
Blo16g00180 BCT 133 523 FH2 protein (formin) Gene Family AT5G07770 67.3 1.4e-138 490.3
Blo12g01054 . 844 1217 FH2 protein (formin) Gene Family AT5G07770 54.6 1.7e-107 387.1
Blo17g00002 . 1323 1698 FH2 protein (formin) Gene Family AT5G07770 54.6 2.0e-105 380.2
Blo04g00781 BCT 1717 1981 FH2 protein (formin) Gene Family AT5G07770 64.3 2.8e-86 316.6
Blo19g00153 . 801 1049 FH2 protein (formin) Gene Family AT5G07770 56.4 4.3e-71 266.2
Blo04g00779 BCT 37 177 FH2 protein (formin) Gene Family AT5G07770 63.1 1.0e-40 165.2
Blo12g01054 . 838 1224 FH2 protein (formin) Gene Family AT3G32400 71.0 3.4e-154 542.0
Blo17g00002 . 1317 1707 FH2 protein (formin) Gene Family AT3G32400 68.5 5.1e-150 528.1
Blo16g00180 BCT 121 530 FH2 protein (formin) Gene Family AT3G32400 63.6 1.1e-139 493.8
Blo08g00524 . 755 1124 FH2 protein (formin) Gene Family AT3G32400 57.8 7.2e-112 401.4
Blo19g00153 . 780 1100 FH2 protein (formin) Gene Family AT3G32400 55.3 2.2e-92 336.7
Blo04g00781 BCT 1730 1981 FH2 protein (formin) Gene Family AT3G32400 66.1 2.4e-91 333.2
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT3G32400 63.5 1.9e-43 174.1
Blo17g00002 . 577 1707 FH2 protein (formin) Gene Family AT2G25050 57.2 0.0e+00 1086.6
Blo12g01054 . 53 1224 FH2 protein (formin) Gene Family AT2G25050 54.2 1.5e-293 1006.1
Blo16g00180 BCT 133 530 FH2 protein (formin) Gene Family AT2G25050 62.9 1.9e-139 494.2
Blo16g00179 BCT 709 1077 FH2 protein (formin) Gene Family AT2G25050 61.2 4.8e-130 463.0
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT2G25050 64.9 6.8e-44 176.8
Blo19g00154 . 104 230 FH2 protein (formin) Gene Family AT2G25050 66.9 2.8e-37 154.8
Blo16g00180 BCT 134 530 FH2 protein (formin) Gene Family AT5G07780 62.3 1.5e-122 436.8
Blo12g01054 . 845 1224 FH2 protein (formin) Gene Family AT5G07780 51.5 2.6e-95 346.3
Blo17g00002 . 1324 1705 FH2 protein (formin) Gene Family AT5G07780 51.3 8.3e-94 341.3
Blo04g00781 BCT 1732 1981 FH2 protein (formin) Gene Family AT5G07780 57.9 3.4e-71 266.2
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT5G07780 68.9 6.7e-43 172.2
Blo16g00180 BCT 100 537 FH2 protein (formin) Gene Family AT5G07740 78.8 7.2e-185 645.6
Blo16g00179 BCT 709 1367 FH2 protein (formin) Gene Family AT5G07740 54.7 2.0e-179 627.5
Blo04g00779 BCT 13 191 FH2 protein (formin) Gene Family AT5G07740 67.0 1.8e-55 215.7
Blo19g00154 . 104 230 FH2 protein (formin) Gene Family AT5G07740 63.0 6.6e-37 154.1
Blo16g00180 BCT 208 537 FH2 protein (formin) Gene Family AT5G07760 72.6 1.4e-126 451.1
Blo12g01054 . 919 1224 FH2 protein (formin) Gene Family AT5G07760 61.7 3.1e-102 370.2
Blo17g00002 . 1398 1705 FH2 protein (formin) Gene Family AT5G07760 61.1 5.5e-99 359.4
Blo04g00781 BCT 1806 1981 FH2 protein (formin) Gene Family AT5G07760 77.3 6.3e-71 266.2
Blo19g00153 . 875 1049 FH2 protein (formin) Gene Family AT5G07760 62.9 1.3e-60 231.9
Blo04g00779 BCT 37 184 FH2 protein (formin) Gene Family AT5G07760 65.8 2.3e-44 177.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01433 Blo_Chr03 FPKM 3.145833 5.634955 8.665826 10.503488 6.836217 5.2946 7.504002 15.37145 14.469418 19.028835