Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01436 ATGTGCCGCAAAGCCAGAAATTTAAGCTCTCTCTTCCTTTCTGCTGTTGAAACTTCCAAAACTGCCGCAGATGCAGCCCTCAAACGCTACGTCTCCTCCATCGATCCATTATCTCCCAGCACCTCCCTTTCTAAAGCCATAACCCAACGCTCACTTTTTAAGTCTGAGGACTTTCCGAAAATCCCTGCCGATTCTCGGCGTTCGACCCTCGAGGAACCGGCGGCCTTGGATTCTGGTTGGTTATTTTTGTGTTTGGAAATATGTAGTAATTGGAGTAGAATTTATGCATTTTATCTGGATTTACTCTTCATACTTATATTAGTTTTGATGTGTTTGAAAGCAGAGGCATCTGAGGAGCACATAACCAGGGCCATTTCTTCCATATTATGCGTGGGGAATTGTGCACAGAAGCTGGGGACATGCGCTACTATTGAGGTTTTTGGTAAATTAGGACGTGAAACTGGTGAGAAAGAGTACAGTGCTTTAATAAGAATCTGCATAGAGAAGGCTAGGACTACTAATGATGTGGAGGTTGTTCTAGAACAGATTTCTAATGCATTTTTTCTTACTACAACAATGAAAGAACAAGGTTTTAAGTTAGAAGACAAAACTTATGGGCCAGTTCTTATGTTTTTGATGGAAATGGACATGATGAAAGAGTTCCAATGTTTCTCTGAGCTTCTAAAAAATGGAAACCCAACTTTAGTTTCGAGGTTGGGTTACTATGAGATGTTGTCATTGGTCAGAATCAATGATACAATGAAAGTTCATGAGCTCTGTAAGGATGTTTTAACCGAGGATGGGACTGATAGAACCAGTTTACGAGAAAACTACATGTTAGCTCTATCTGAAAATGGTTGGAAGGAGGAGTTTTTGATGCTGTTGGAAACTACGGACATAAAGAAGTTCTCATCAGTGGATTATATCGTTAACATCTTTAAATCCTTTGGAAGGCTATCACTTGAAACTTTTGCGGAGAAACTCCTTTTGGAGTTCAAAGCTAGTGAGCAAGGAGAAGAGAATGTCTCGGACTTCATTCTTAGTTATGTTATTAGCATTCCAAATTTAGCGTTTGAGGATGCCATTTCAAAATTCAAGAACTTACATATCAAACTGGAGTTGAATCCATCATCTGCATCTTATGAGACGCTCATCATCTATTGCTGTGATTTTCTTGAGGTGCATTTGGCTCTTGATCTTGCTAAAGAAATGTGTGAAGCAGGTTCCATGCTCTCAGCGGATAAGTTACACCCCATTTTAGATGCTAGTGGGGAAAGTTATAACTTTAACTTGGTTCATCAAGTCTATTCGATCATATGTCAATATGACTTAAAGCCAAATGGTGAAACCTTCAGGAGAATGATAAATTTGTGTGTGAGAACGAAAGATTTTGATGGTGCATATGACATGCTCAAGGATTTGCAAAATATGAACTTGACTCCTACAAGCAGCATGTACAATGCTATAATGGCAGGTTATTTTCGAGAGGTTGATTACATTCTTTGGGTTATGAAGAACTTTTCGCCATATACTCTGCAGAAAAACATTTACGGTGGACTGATGGTTCTGAAACAAATGGAACTTGCTGATGTAAAACCAGACTCTCAGACCTTCAGCTTGCTTCTCACCAACTGTTATCAAGAAGACGATATTACCAAGTATTATGAAGAATTGAAGACTTGTGGAATTCAAATTACTAAACAAATCTTCATGGCTCTTATAAATGCATATGCGAATTGTGGACAGTTTGAGAAGGCAAAACAGATAATATTAGACAAGAGAATCCCAGTGAAGAACTTGAATGAATTAAAAAGTGTTCTTGTCTCTTCTCTCGCTTCATGTGGTCAAGTGGATGATGCTCTCAGTGTTTACAACGAAATCAAACAAGCTGGCTGCAATCTTGAGCCGAAAGCAGTTATAAGCCTCATTGAGCACCTTCAATTTACTGGGGAATTGAGTTTAAGGCTTCAGCTCCTTGATGAGTTGAAGGATCCTCATTACTGGATTGATGGTTGCAGTAGAGTTATTTTGTATTGTGTACAACATAAGCACTTAAGTTCGGCCATTAATCTTCTGAGGCAACTCAAGAATAATTTTTGCGAAGATGAGCTTGGCATGGAAGGAATTTTTGATGAGGTATTTTGTCTCATTGCAGAGTTGGACCCAACATATTTAGAGGTTGGCCTGGAATTGCTGAGAGTTATCAAGTGTGAATTTGGACTGTCTCCTCCTCGAAAATGTCTCGATTTTCTTCTCAGCGCTTGCGTCAATGCCAAAGACTTGGATAATTCGCGATTAATTTGGAAGGAATATCAATCAGCTGGCCTCCCTTATAATGTTCTAAGCTTTTTGAGTGGTTGTGTCCATAATTTCCCATTAATTAAAATAGCGCGATACAGTAAACAGAAGGAACAGAAGTTTTCTTGCTGCCCCATAGCACAGAAGGTTATTTGGGCTTTGGTCTTCTTCAAAGACTCTTCTCCTCTCAAGTATCTGCTTCCTACCATGGCGAAGGTGGCTCTTGGCTGCGAACCAGTGGTGGGTTCGTTGACTTCTTCCAAGAAGAAGGAGTACAGGGTCACCAACCGGCTCCAGGAAGGCAAGCGTCCACTTTATGCTGTCGTTTTTAATTTCATCGACTCCCGCTTTTTCAACGTCTTCGCTACCGTTGGTGGTAATCGAGTAACGGTTTACCAATGTCTTGAAGGAGGTGTTATAGCCGTGTTGCAGTCTTACGTCGATGAAGATGTGAATCAGAAGGACGAGTCATTTTACACTGTGAGCTGGGCATGTAGTATCGATGGCATTCCGTTTGTCGTTGCAGGAGGAATCAATGGCATAGTGCGTGTCATTGATGCTGGGAGCGAAAAGATACACAAGAGTTTTGTTGGTCATGGTGACTCGGTCAATGAAATCAGGACTCAACCATTGAAACCATCACTTATTGTCTCTGCAAGTAAAGATGAATCTGTTCGACTATGGAATGTTCATACGGGCGTGTGCATTCTGATATTTGCTGGAGCTGGAGGTCATCGGAATGAGGTTTTGAGTGTGGATTTTCATCCTTCAGACATTTATCGCATTGCTAGCTGCGGAATGGACAATACTGTAAAAATTTGGTCAATGAAAGAGTTTTGGACATATGTAGAGAAGTCTTTCACTTGGACAGATCTTCCATCAAAATTTCCCACTAAGTATGTGCAGTTTCCAGTTTTCATTGCTTCGGTGCATTCAAACTATGTTGACTGTAATAGATGGCTTGGTGATTTTATTCTCTCGAAGGTGAATAATTTCTCGTCCATTACGTTGTATTTCGTTGACAATGAAATAGTGTTGTGGGAAGCCAAAATGAAGGAACATTCACCTGGGGAGGGCTCTGTTGACATTCTTCAAAAATACCCCGTCCCCGAATGCGACATCTGGTTCATCAAGTTTTCCTGTGATTTTCATTATTATGCTGCTGCCATAGGAAATAGGGAAGGGAAGATATTTGTTTGGGAACTTCAATCCAGCCCTCCTATTCTCATAGCAAGATTGTCTCACGCTCAATCGAAATCGCCGATCAGACAGACGGCCATATCCTTCGATGGAAGGTGGTGGTTGAAGAAGAAACAGCCTATGGTTATGATTGAAAGTGGGTTTGAAGAATTGGTTATTTTTGTGTTCTGGTTTGTGGGTATTTCGCTTTACTTGATTATGGGGATGACAAACGATGCAATTCCAAAGCAGCAGGGAGGGTTGCCTCGATCAGGTCGGGCAAATGGGCTCCTTTCGAACTCATTGCGTACCATATCCAGCTACCTAAAGATCGTCTCTTCTGGGGCTTCGACTGTAGCAAGGTCGGCTGCAACGGTGGCATCGTCGATTGTGGATAAGAATGAAGATGCCAATCGTGATCAGGTAAACTGGGTTGGCTTTGACAAGTTAGAGATTGAAGGAGATGTCAGCCGACGAGTTCTCCTTCTGGGTTATCGGTCTGGTTTCCAAGTTTGGGACGTTGAAGAAGCCAACAACGTCCGAGACTTAGTTTCCAGAAACGATGGTTCTGTATCATTTATGCAAATGTTACCAATCCCATTAAAATCAAAAACGTTGAAAGATAAATTCGAAGGTAGTCGACCAATGCTAGTTCTTTGTGCCGATGGTTCGATAAACATTAATGGCAGCCTTCAGGATCGAACAGCCAGTCAAGGAACCATAGCGAATAGGAACTCTCAAGACCCATCAAATGTTAGCTTTTATTCATTGAGGTCTCAATCTTACATCCACGAGCTGAAGTTCCAGTCCGCTGTTTATTCGATAAGGTGCAGTTCCAGAGTTATAGCGATATCTCAAGCAACTCAAATACATTGTCTCGATGCCATGACATTAGAGAGGCAATATTCGATTCTAACAAATCCAATAGTCTTGGGTTGTCCTAGTTTTGGAGGTATAGGCTATGGACCTCTTGCTATAGGGACTAGATGGTTAGCTTATAGTGGAAAACTCGTTGTGATTACTGATTCTGGCCGTGTGAATCCTCAACATCTTACACCTTCTGCAAGCTCTCCTGGTTTTGCTTCAAACGGAAGCTTAGTGGCGCACTATGCGAAGGAATCAAGTAAACAACTTGCCCAAGGAATAGCTACCCTCGGAGACGCGGGATATAAGAAGCTCTCGAGATATTGCTCAGAGCTTATCCCAGACGGTAATAATTCTTTGCAGTCGAGATTTCCTAGTTGGAAGGGCCATGGAGCTCTTAATGGCCATTTGTCGGATGCGGATAATGTTGGAATGGTCATTGTGCGGGATATCGTCAGCAAAGATGTTCTCACCCAGTTCAGGGCTCACAAGAGTTCAATCTCGGCATTATGCTTCGATCCCAGTGGGACCCTTTTAGTGACGGCATCTGTACAAGGCCATAACATAAATGTTTTCAAAATCATGCCTGGATTATCTGAAAGTTCTTCGGATCCTGATTCTGCTTCATCTAGTGTTCATCTTTACCGACTCCAACGGGGTTTAACTAACGCAGTCATACAAGATATCAGTTTTGGCAGTGATAGCAACTGGATTATGATCAGTTCCTCCAGAGGGACAAGCCATCTTTTTGCTATAAACCCAGTTGGCGGATCGGTGAATTTACAGTCTGGTGCTTTGACAAAGCCGCCAGTTCAAAACCCGCAAAATTGTGTCTCTCAAATGCCAAATCAACAGATCCAACATGCATCTTGTCCTCCATTGACACTTTCTGCTATATGCAGAATTCATAATGGAAATGGCTGGAGAGGCACTGTAACTGGGGCTGCAGCTGCTGCAGCAGGCAGAGCAAGCCCCCCATCAGGGCCTATTGCTTCGTGTTTTCATAAATGCAAAGATAATTCTTTGCATGTCGATAATGGCTCGATAAAATCTAAGCATCACCTTCTACTTTTTTCGCCTTCCGGGAGTATGGTTCAATATGCATTACGAATTGGTTTAGATCAGATGGCTGTTGTGTCTGGTCCAAATTGTGCCCCTGAATCAGCTCCAGAGGGTGATTCTAGGCTAGCAGTGGAGGCAATTCAGAAGTGGAATATATGCCAAAAACAAAATCGGAGAGAGCGAGATGATAACATCGATATATATGGTGATAATGGCTCATACGGCAAGAAAATATTTACTGACAAGACAAGCGGAAATCCTCATTTTTCAGAAGATGGTGGTTCAATTACAGAAGAAAAGCACCATTTGTACATTGCAGAAGCTGAATTGCAGATGCATCAAGCTCTAAACCCGTTGTGGGCAAAACCAGAGATCTACTTTCAATCAATCATGAGCGATGATATCGATGTAGATGAAGTAAATCTTTCAAATGGGGAAATTAAGATAGAAAGGATACCGACTCGTACGATCGAAGCACGGTCAAAAGATCTGGTTCCTGTCTTTGACTATCTTCATACTCCCAAGCCAGTGCAAATCAGGGTTTCTTCTGCAGATTCCAATATTGCTAGACCATACCAGAAATCTTATCATCCTGAAAATGGCAATCATCCATGGAGGAGCTTTGCAGGTGCTCATCACTCTGCTGCTATAAATGGCACAGCCATGGCTGAACAACAGAATGGAAAGGTGGCAACCAGCCAGAATAGTCCTAGAACTGGATTAGAAACAGGGGACGCTGTAAATAACAATGACAGCCATAAAACACCAACTCAGCTTGAGATTGTAAATAATACAGCGAGCTCAAAAATGGAGGCTCAACTCAAGTTTGTAAATAATCATAATGGAAGTGTGAAGATGGAGAATCGCTTTGAAGACGAAGGCGACGAGTTTGATTAA 6300 41.84 MCRKARNLSSLFLSAVETSKTAADAALKRYVSSIDPLSPSTSLSKAITQRSLFKSEDFPKIPADSRRSTLEEPAALDSGWLFLCLEICSNWSRIYAFYLDLLFILILVLMCLKAEASEEHITRAISSILCVGNCAQKLGTCATIEVFGKLGRETGEKEYSALIRICIEKARTTNDVEVVLEQISNAFFLTTTMKEQGFKLEDKTYGPVLMFLMEMDMMKEFQCFSELLKNGNPTLVSRLGYYEMLSLVRINDTMKVHELCKDVLTEDGTDRTSLRENYMLALSENGWKEEFLMLLETTDIKKFSSVDYIVNIFKSFGRLSLETFAEKLLLEFKASEQGEENVSDFILSYVISIPNLAFEDAISKFKNLHIKLELNPSSASYETLIIYCCDFLEVHLALDLAKEMCEAGSMLSADKLHPILDASGESYNFNLVHQVYSIICQYDLKPNGETFRRMINLCVRTKDFDGAYDMLKDLQNMNLTPTSSMYNAIMAGYFREVDYILWVMKNFSPYTLQKNIYGGLMVLKQMELADVKPDSQTFSLLLTNCYQEDDITKYYEELKTCGIQITKQIFMALINAYANCGQFEKAKQIILDKRIPVKNLNELKSVLVSSLASCGQVDDALSVYNEIKQAGCNLEPKAVISLIEHLQFTGELSLRLQLLDELKDPHYWIDGCSRVILYCVQHKHLSSAINLLRQLKNNFCEDELGMEGIFDEVFCLIAELDPTYLEVGLELLRVIKCEFGLSPPRKCLDFLLSACVNAKDLDNSRLIWKEYQSAGLPYNVLSFLSGCVHNFPLIKIARYSKQKEQKFSCCPIAQKVIWALVFFKDSSPLKYLLPTMAKVALGCEPVVGSLTSSKKKEYRVTNRLQEGKRPLYAVVFNFIDSRFFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDEDVNQKDESFYTVSWACSIDGIPFVVAGGINGIVRVIDAGSEKIHKSFVGHGDSVNEIRTQPLKPSLIVSASKDESVRLWNVHTGVCILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKVNNFSSITLYFVDNEIVLWEAKMKEHSPGEGSVDILQKYPVPECDIWFIKFSCDFHYYAAAIGNREGKIFVWELQSSPPILIARLSHAQSKSPIRQTAISFDGRWWLKKKQPMVMIESGFEELVIFVFWFVGISLYLIMGMTNDAIPKQQGGLPRSGRANGLLSNSLRTISSYLKIVSSGASTVARSAATVASSIVDKNEDANRDQVNWVGFDKLEIEGDVSRRVLLLGYRSGFQVWDVEEANNVRDLVSRNDGSVSFMQMLPIPLKSKTLKDKFEGSRPMLVLCADGSININGSLQDRTASQGTIANRNSQDPSNVSFYSLRSQSYIHELKFQSAVYSIRCSSRVIAISQATQIHCLDAMTLERQYSILTNPIVLGCPSFGGIGYGPLAIGTRWLAYSGKLVVITDSGRVNPQHLTPSASSPGFASNGSLVAHYAKESSKQLAQGIATLGDAGYKKLSRYCSELIPDGNNSLQSRFPSWKGHGALNGHLSDADNVGMVIVRDIVSKDVLTQFRAHKSSISALCFDPSGTLLVTASVQGHNINVFKIMPGLSESSSDPDSASSSVHLYRLQRGLTNAVIQDISFGSDSNWIMISSSRGTSHLFAINPVGGSVNLQSGALTKPPVQNPQNCVSQMPNQQIQHASCPPLTLSAICRIHNGNGWRGTVTGAAAAAAGRASPPSGPIASCFHKCKDNSLHVDNGSIKSKHHLLLFSPSGSMVQYALRIGLDQMAVVSGPNCAPESAPEGDSRLAVEAIQKWNICQKQNRRERDDNIDIYGDNGSYGKKIFTDKTSGNPHFSEDGGSITEEKHHLYIAEAELQMHQALNPLWAKPEIYFQSIMSDDIDVDEVNLSNGEIKIERIPTRTIEARSKDLVPVFDYLHTPKPVQIRVSSADSNIARPYQKSYHPENGNHPWRSFAGAHHSAAINGTAMAEQQNGKVATSQNSPRTGLETGDAVNNNDSHKTPTQLEIVNNTASSKMEAQLKFVNNHNGSVKMENRFEDEGDEFD 2099
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40928437 40950159 - BLOR12617 Blo03g01436 58900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01436 2099 ProSiteProfiles Trp-Asp (WD) repeats profile. 962 1004 IPR001680 GO:0005515
Blo03g01436 2099 SUPERFAMILY WD40 repeat-like 1104 1700 IPR036322 GO:0005515
Blo03g01436 2099 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 1248 2067 IPR045142 GO:0006914
Blo03g01436 2099 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 1248 2067 - -
Blo03g01436 2099 Pfam Breast carcinoma amplified sequence 3 1739 1967 IPR022175 -
Blo03g01436 2099 Gene3D - 1292 1726 IPR015943 GO:0005515
Blo03g01436 2099 TIGRFAM PPR: pentatricopeptide repeat domain 606 633 IPR002885 -
Blo03g01436 2099 Pfam PPR repeat 606 632 IPR002885 -
Blo03g01436 2099 Pfam PPR repeat 570 589 IPR002885 -
Blo03g01436 2099 Gene3D - 852 1202 IPR015943 GO:0005515
Blo03g01436 2099 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1008 1043 - -
Blo03g01436 2099 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Blo03g01436 2099 Pfam WD domain, G-beta repeat 1604 1633 IPR001680 GO:0005515
Blo03g01436 2099 Pfam WD domain, G-beta repeat 960 995 IPR001680 GO:0005515
Blo03g01436 2099 Pfam WD domain, G-beta repeat 1001 1041 IPR001680 GO:0005515
Blo03g01436 2099 MobiDBLite consensus disorder prediction 2025 2056 - -
Blo03g01436 2099 Pfam Pentatricopeptide repeat domain 443 491 IPR002885 -
Blo03g01436 2099 ProSitePatterns Trp-Asp (WD) repeats signature. 982 996 IPR019775 -
Blo03g01436 2099 Gene3D Tetratricopeptide repeat domain 508 715 IPR011990 GO:0005515
Blo03g01436 2099 Gene3D Tetratricopeptide repeat domain 335 500 IPR011990 GO:0005515
Blo03g01436 2099 SUPERFAMILY WD40 repeat-like 861 1199 IPR036322 GO:0005515
Blo03g01436 2099 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 962 999 - -
Blo03g01436 2099 SMART WD40_4 998 1041 IPR001680 GO:0005515
Blo03g01436 2099 SMART WD40_4 920 952 IPR001680 GO:0005515
Blo03g01436 2099 SMART WD40_4 1600 1640 IPR001680 GO:0005515
Blo03g01436 2099 SMART WD40_4 1657 1698 IPR001680 GO:0005515
Blo03g01436 2099 SMART WD40_4 955 995 IPR001680 GO:0005515
Blo03g01436 2099 SMART WD40_4 1126 1167 IPR001680 GO:0005515
Blo03g01436 2099 ProSiteProfiles Trp-Asp (WD) repeats profile. 1008 1043 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01436 - - - qlo:115955563 1065.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00582 Blo03g01436 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01436 Blo-Chr3:40928437 Blo18g00598 Blo-Chr18:9225980 1.17E-160 dispersed
Blo10g00363 Blo-Chr10:5669825 Blo03g01436 Blo-Chr3:40928437 1.71E-09 dispersed
Blo03g00582 Blo-Chr3:22835880 Blo03g01436 Blo-Chr3:40928437 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011571 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01436 Blo_Chr03 FPKM 3.740995 3.328406 130.673752 133.962769 445.001923 497.470032 405.337982 67.684563 64.676994 61.015545