Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01437 ATGGCAGGCAAAAACAGTATGTTTCGGTATGCAGATGGAGTCGACAAGTTGTTTATGCTATTCGGGACTTTAGGCAGCTTCGGAGATGGAATTCAAATCCCTCTCACCATGTTCGTTCTTAAAGACGTGTTCAACGCCTACGGAGATCCAAAAAGTGTCATCTCAAAAGATATAGTTGATAAGGTAAACGCATATTTCAGTCTAAATATTGAAACGGCTGATCTGATTTTCGATCTTCAGTTTGCATTGCGCCTGTTTTATGTTGCCATTGGAGTATTAGTTTCTGCCTTCGTGGCTTTTAACTTGTATCTCAATTTGCCTTCATTTTCTTCATCTTTGATTCGTCATGCAGAGGGGGTTTGCTGGACAAGAACTGCCGAGAGACAAACCTCTCGGATGCGATTGGAATATCTGAAATCTGTTCTCCGACAAGAAGTTAGCTTCTTCGACACCCAATCAGCTGGTTCTTCAACTGTTCATCAAGTTGTTTCGCTTGTATCCTCCGATGCTAATTCAATCCAAGCCGCTTTGTGCGAGAAGATTCCAGACTGCCTTGCTTCAATGTCAACTTTCTTCTCCTGCCACATATTCGCCTTTGCGGCTTCTTGGAGAATGACATTGGCTGTTATACCGATATCAGTTATGTTCATCGTTCCATGTATGGTTTTTGGAAAGATCATGATGGACATGATAATGAAGATGATAGAATCTTATGGAGTTGCAGGTGGAATAGCTGAACAAGCAATTTCTTCGGTGAGGACTGTGTATTCATATGTAGGAGAAAATCATACTCTCGAAAAATACAGCCAAGCACTTCAAAAAAGCATGGAATTCGGCATAAAGTCCGGCTTTGTTAAGGGATTGATGCTAGGAAGCATGGGAATTATCTATGTGGGTTGGAGTTTTCAGGCTTGGGTCGGCACGTATTTGATCACCGAAAAGGGTGAAAAAGGCGGCAACGTTTTTGTAGCCGGTTTCAATGTTCTTATGGGAGGATTGAGTATCTTAGGTGTTCTTCCCCATCTAACTGCAATCACTGAGGCAACTTCTGCAACTACCAGAATCCTCGAGATGATTGACCGAATCCCAAATTTAGATTCAGAGGAGAAAAGGGGGAAGGCTTTATCACATGTAAGAGGAGAACTGGAGTTCAAGAACATACATTTTAGTTATCCATCCCGGCCTGATACACCAGTTTTACGAGGCCTCAATCTCAAGGTCAAAGCTGGGATGCAGGTCGGGATTGTGGGGAGTAGTGGCTCTGGCAAGTCTACTGTCATTTCCCTTCTTGAAAGATTTTATGATCCCACTGAAGGAGAGATACTCCTGGATGGACACAACATAAAAAAACTTCAGCTCAAGTGGTTGAGATCTCAAATGGGTCTGGTTAATCAGGAACCAGTTCTATTTGCAACATCAATAAAAGAGAACATACTATTTGGGAAGGATGGAGCTTCGATGGAGCTTGTGATTTCTGCAGCTACAGCTGCAAATGCTCATGACTTCATAGTTAAGCTTCCAGAAGGCTATGAAACTCAAGTTGGACAGTTTGGATTTCAGTTATCTGGAGGCCAAAAACAGCGGATCGCCATAGCGAGAGCTCTTCTCAGGGACCCAAAAATACTGCTACTTGATGAAGCAACTAGTGCCCTGGATGCACATGCTGAAAGAGTATTACAGGAAGCCATTGACAAGGTCTCGAAAGGGAGGACGACAATCTGTATAGCTCATCGACTCTCCACGATACGAACAGCAAATCAGATTGTGGTTCTTCAAAATGGAAAAGTAGTTGAATCGGGTTCACACAGTGAGTTGGTGCAGATAAATAATGGACGTGGTGGGGAGTATTTCAGGATGCTACAATTGCAGCAAACGGCAGTGCAAGTGGAAGCTTTGAGTGACTTCAATTCTCAAACTGCAGGAAGAAGCCGGCAGAGGGCGAGCGTTCCAAATTCTCCGCTCAGTGTGAGATCAACTCCGCCAAGCACACCAGCATTGCAATCGTTCAATGCGATGTCTATGTCGATCATGGGCACACCTTACTCCTACTCAGTTCAATTCGATCCAGATGATGAAAGTTATGAAGAAGATTCAAAGAATTTAACACACCTTCCACCTTCACAATGGCGATTACTGATGATGAATGCGCCCGAATGGGGAAGTGCCTTGCTTGGATGTCTAGGCGCAGTGGGCTCAGGAGCAGTCCAGCCAGTAAATGCCTACTGTGTAGCCCAATTGATATCAGTTTACTTTCAAGCTGGAGATGGAGAGCCAGGTTTCAAGTCTAAATCAAGAAAATTGTCTCTTGTCTTCTTGGGTATTGCCATCTTCAACTTCCTCACAAATATCCTGCAACATTATAATTTTTCAGTCATGGGTGACAGATTGACGAGAAGGGTGCGAGAAAAAGTACTTGAAAATCTTATGACATTTGAGATTGGATGGTTTGATCAAGATGAGAACAATAGTGCAGCAATCTGTGCAAGACTATCAAGTGAGGCAAACATGGTTCGCTCACTTGTCGGGGACCGAATGTCATTATTGGTCCAAGCAATTTTCGGGTCAGTGTTTGCTTACACGGTCAGTCTCGTCCTCTCATGGAGGCTTACCCTTGTATTGATTACAGTGCAGCCATTGATAGTTGGGAGTTGTTATGCAAGAAGTGTCCTAATGAAGAGTACGGCCGGGAAAGCTCGAAAAGCACAGAGGGAAGGAAGTCAACTAGCAAGTGAAGCTGTCACTAACCACAGAACTATAACTGCATTTTCTTCCCAGAGGAAGATTTTGGGACTCTTCAGCGCCACCCAAAAAGGTCCTCAAAAGGCGAGTGCCAAACAGTCCTGGATTACTGGTCTTGGCCTGGGTAGTTCCCAATTTTTCAATGCAGCTTTCTCGGCTTTAGCTTTTTGGTATGCCGGGAGGTTATTATCTGAACATTTAATATCACCAGAGCACATCTTTGAAGCATTTTTGATCCTATCATTCACAGCATATGTCATAGCAGAAGCAGGAAGCATGACAAATGACTTATCCAAAGGAAGCAGAGCTGTTACATCAGTGTTTGGAATTCTAGATAGGAAAACCGAAATCGATCCGGATAGCAAATGGGGAATGGATTTCAGAAGACGGTTAAAGGGCCGTATCGAACTTAGAAATGTTTACTTTTCATACCCGACAAGACCTGACCAGATGATATTGCAGGGACTGAGCCTCAAAATGGAAGCAGGAAGAACCCTTGCACTTGTGGGACATAGTGGTTCCGGAAAATCGACCATTATCGGACTTATCGAAAGATTTTACGATCCCATGAGTGGATCTGTACACATAGATGAACAAGATATTAAGAACTATAATTTGAGGATACTGAGATCTCATATTGCTTTAGTCTCCCAAGAGCCAACCCTTTTTGCTGGAACCATCAGGGAAAACATCATATATGGGAAAGACGATGCTACTGAATCAGAGATAAGAAAAGCTGCTAGTCAAGCCAACGCCCATGAATTTATAAGTGGAATGAAAGATGGGTATGGTACATACTGTGGAGAGAGAGGAGCTCAGCTATCTGGAGGTCAGAAACAAAGGATTGCATTAGCAAGAGCAATACTGAAGAACCCATCGATCCTCCTATTGGATGAGGCAACCAGTGCACTAGACAGTGTATCAGAAAACTTGGTTCAAGAAGCATTGGAAAAGATGATGAGGGGCCGGACCTGCATTGTCATTGCTCATCGGCTATCTACGATTCAAAAATCAAACTCCATTGCAGTGATCAAGGCCGGAAAAGTAGTGGAACAAGGCTCGCATAATGAGCTGATTTCTGTCGGGCAGGGAGGGGAGTATTTTTCCCTCATGAAACTGCAGTGTGGATCAAACATTTAG 3879 43.52 MAGKNSMFRYADGVDKLFMLFGTLGSFGDGIQIPLTMFVLKDVFNAYGDPKSVISKDIVDKVNAYFSLNIETADLIFDLQFALRLFYVAIGVLVSAFVAFNLYLNLPSFSSSLIRHAEGVCWTRTAERQTSRMRLEYLKSVLRQEVSFFDTQSAGSSTVHQVVSLVSSDANSIQAALCEKIPDCLASMSTFFSCHIFAFAASWRMTLAVIPISVMFIVPCMVFGKIMMDMIMKMIESYGVAGGIAEQAISSVRTVYSYVGENHTLEKYSQALQKSMEFGIKSGFVKGLMLGSMGIIYVGWSFQAWVGTYLITEKGEKGGNVFVAGFNVLMGGLSILGVLPHLTAITEATSATTRILEMIDRIPNLDSEEKRGKALSHVRGELEFKNIHFSYPSRPDTPVLRGLNLKVKAGMQVGIVGSSGSGKSTVISLLERFYDPTEGEILLDGHNIKKLQLKWLRSQMGLVNQEPVLFATSIKENILFGKDGASMELVISAATAANAHDFIVKLPEGYETQVGQFGFQLSGGQKQRIAIARALLRDPKILLLDEATSALDAHAERVLQEAIDKVSKGRTTICIAHRLSTIRTANQIVVLQNGKVVESGSHSELVQINNGRGGEYFRMLQLQQTAVQVEALSDFNSQTAGRSRQRASVPNSPLSVRSTPPSTPALQSFNAMSMSIMGTPYSYSVQFDPDDESYEEDSKNLTHLPPSQWRLLMMNAPEWGSALLGCLGAVGSGAVQPVNAYCVAQLISVYFQAGDGEPGFKSKSRKLSLVFLGIAIFNFLTNILQHYNFSVMGDRLTRRVREKVLENLMTFEIGWFDQDENNSAAICARLSSEANMVRSLVGDRMSLLVQAIFGSVFAYTVSLVLSWRLTLVLITVQPLIVGSCYARSVLMKSTAGKARKAQREGSQLASEAVTNHRTITAFSSQRKILGLFSATQKGPQKASAKQSWITGLGLGSSQFFNAAFSALAFWYAGRLLSEHLISPEHIFEAFLILSFTAYVIAEAGSMTNDLSKGSRAVTSVFGILDRKTEIDPDSKWGMDFRRRLKGRIELRNVYFSYPTRPDQMILQGLSLKMEAGRTLALVGHSGSGKSTIIGLIERFYDPMSGSVHIDEQDIKNYNLRILRSHIALVSQEPTLFAGTIRENIIYGKDDATESEIRKAASQANAHEFISGMKDGYGTYCGERGAQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSENLVQEALEKMMRGRTCIVIAHRLSTIQKSNSIAVIKAGKVVEQGSHNELISVGQGGEYFSLMKLQCGSNI 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 40954132 40959652 + BLOR12618 Blo03g01437 58901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01437 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1048 1284 IPR003439 GO:0005524
Blo03g01437 1292 SMART AAA_5 1075 1268 IPR003593 -
Blo03g01437 1292 SMART AAA_5 409 595 IPR003593 -
Blo03g01437 1292 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524
Blo03g01437 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 723 1012 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo03g01437 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 108 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo03g01437 1292 Gene3D - 1039 1291 IPR027417 -
Blo03g01437 1292 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1288 IPR039421 -
Blo03g01437 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1042 1287 IPR027417 -
Blo03g01437 1292 Gene3D - 380 648 IPR027417 -
Blo03g01437 1292 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 355 - -
Blo03g01437 1292 Pfam ABC transporter transmembrane region 724 994 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo03g01437 1292 Pfam ABC transporter transmembrane region 109 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo03g01437 1292 CDD ABC_MTABC3_MDL1_MDL2 1048 1287 - -
Blo03g01437 1292 ProSitePatterns ABC transporters family signature. 1187 1201 IPR017871 GO:0005524
Blo03g01437 1292 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1288 - -
Blo03g01437 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 623 IPR027417 -
Blo03g01437 1292 MobiDBLite consensus disorder prediction 637 663 - -
Blo03g01437 1292 Pfam ABC transporter 400 549 IPR003439 GO:0005524
Blo03g01437 1292 SUPERFAMILY ABC transporter transmembrane region 709 1031 IPR036640 GO:0005524|GO:0016021
Blo03g01437 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Blo03g01437 1292 CDD ABC_MTABC3_MDL1_MDL2 383 623 - -
Blo03g01437 1292 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 1030 - -
Blo03g01437 1292 Pfam ABC transporter 1066 1215 IPR003439 GO:0005524
Blo03g01437 1292 Gene3D ABC transporter type 1, transmembrane domain 113 1017 IPR036640 GO:0005524|GO:0016021
Blo03g01437 1292 SUPERFAMILY ABC transporter transmembrane region 7 366 IPR036640 GO:0005524|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01437 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - csv:101213474 1896.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01437 Blo-Chr3:40954132 Blo18g00361 Blo-Chr18:3808264 0 dispersed
Blo16g00903 Blo-Chr16:36892839 Blo03g01437 Blo-Chr3:40954132 2.34E-15 dispersed
Blo03g01437 Blo-Chr3:40954132 Blo18g00360 Blo-Chr18:3795415 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g448 . Blo03g01437 . . . . . . . . . Cma09g00928 . . . . . Bhi09g01941 . . . Hepe01g1307 Mch11g1155 . . . . . . . . . Cone9ag0100 . . . . Chy04g00994 . . . . . . . . . . . Cmo09g00924 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01437 Blo_Chr03 FPKM 23.13439 23.279181 15.849491 15.321086 33.989594 34.21891 36.070511 3.234022 3.043048 3.133372