Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01448 ATGCGAAAGCTTCATCCGCTTCGTGCCTTGACTCCATATCCTCCGTGTTTAGACGATCCCCTGTTCGTAATTTCCCGCTTATTCAGCAAATCTCTGCCGGACAAGGATTACGACCCTCCATTTTCTCCGGTTTCCAGACCTCCAAAGTCTACCCAAAACAAGAAGAAAACCCAGGAAGTGTCAATTACCAAGAAAGAGCCGCTTCCCCCTCTCGTCTCCGACCTTCCTTTCGACTTCAGATACTCTTACTCCGAGACCAACCCCTTGGTCGACCCCATCGGATTCCGAGAATCTCCAAAATTTTCCCCTTTCGGACCAAACCGGCTGGCCCGAAAATGGACAGGCACATCTGCGCTGTCGCAAGTTGACGCAGACAGCGATAGAGCTCTGGAAGAGAGGAATCGTGTTCTTGGAGACCCACTATGCGACGAGGAAGTTGCAGAGCTAGTTGAAAAATACCGCCACAAGCACTGCCCTCGCCAAATCAATCTAGGTAACCCTGTTGGAATTTGCATTCAAAAGAACTGCTTGAGCAATTCACTCGAAGAATGTTATAAACTGATTAATGTCAGATTAGGAATAGGAGGTGTCACTCACAACATGCTAGACGACATCCATAATCATTGGAGAAGGGCCGAGGCAGTGAGGATAAAGGCGTTGGGGGTGCCTACTCTTGACATGGACAACGTCTGCTTCCACCTTGAGGATAAATCCGGCGGGAAGATTATCTATCGACATATAAACATCTTGCTTTTATATCGGGGTCGGAATTACGACTCCAAAACTCGGCCTGTAATTCCACTCATGCTGTGGAAGCCTTATGCGCCGATATACCCAAAGCTCGTGAAGAAGGTTGTCGACGGGTTAACAATCGAGGAAATGAAGGAGATGAGGAACAGAGGACTGAACTCTTCCCCAATAATGAAACTCACAAGAAATGGGGTGTACGTAAATGTAGTGAGTAAAGTGAGGGAAGCGTTCGAGTCGGAGGAAGTGGTCAGACTGGATTGCACCCATGTTGGCAGCAGCGATTGCAAGAAGATAGGAGTGAAATTAAGGGACCTTGTACCTTGCGTGCCTATTCTGTTCAAGGATGAGCAAGTCATACTATGGGCAGGGAAGAGAGATCAGATGGACAACTCCGACCAATTGAATGAAAAAAACAATACCCATTTGTCCAGGTGA 1185 47.59 MRKLHPLRALTPYPPCLDDPLFVISRLFSKSLPDKDYDPPFSPVSRPPKSTQNKKKTQEVSITKKEPLPPLVSDLPFDFRYSYSETNPLVDPIGFRESPKFSPFGPNRLARKWTGTSALSQVDADSDRALEERNRVLGDPLCDEEVAELVEKYRHKHCPRQINLGNPVGICIQKNCLSNSLEECYKLINVRLGIGGVTHNMLDDIHNHWRRAEAVRIKALGVPTLDMDNVCFHLEDKSGGKIIYRHINILLLYRGRNYDSKTRPVIPLMLWKPYAPIYPKLVKKVVDGLTIEEMKEMRNRGLNSSPIMKLTRNGVYVNVVSKVREAFESEEVVRLDCTHVGSSDCKKIGVKLRDLVPCVPILFKDEQVILWAGKRDQMDNSDQLNEKNNTHLSR 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41132293 41133695 + BLOR12629 Blo03g01448 58912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01448 394 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 23 383 IPR044599 GO:0000373
Blo03g01448 394 SUPERFAMILY YhbY-like 289 375 IPR035920 -
Blo03g01448 394 Pfam CRS1 / YhbY (CRM) domain 190 254 IPR001890 GO:0003723
Blo03g01448 394 Pfam CRS1 / YhbY (CRM) domain 289 371 IPR001890 GO:0003723
Blo03g01448 394 ProSiteProfiles CRM domain profile. 287 383 IPR001890 GO:0003723
Blo03g01448 394 Gene3D - 289 391 IPR035920 -
Blo03g01448 394 Gene3D - 175 264 IPR035920 -
Blo03g01448 394 ProSiteProfiles CRM domain profile. 167 265 IPR001890 GO:0003723
Blo03g01448 394 SUPERFAMILY YhbY-like 190 264 IPR035920 -
Blo03g01448 394 PANTHER CRS2-ASSOCIATED FACTOR 2, MITOCHONDRIAL 23 383 - -
Blo03g01448 394 MobiDBLite consensus disorder prediction 37 64 - -
Blo03g01448 394 SMART CRS1_YhbY_2 289 372 IPR001890 GO:0003723
Blo03g01448 394 SMART CRS1_YhbY_2 177 254 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01448 - - - qlo:115957448 506.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00291 Blo-Chr2:2866946 Blo03g01448 Blo-Chr3:41132293 1.72E-103 dispersed
Blo03g01448 Blo-Chr3:41132293 Blo16g01021 Blo-Chr16:38571319 4.34E-80 dispersed
Blo03g01448 Blo-Chr3:41132293 Blo07g00020 Blo-Chr7:384872 7.39E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g497 . Blo03g01448 . Bda09g00398 . Bpe08g01126 . . . . . Cma09g00946 . Car09g00860 . Cpe06g00762 . . . . . . . . . . . . . . . . . . . Lsi04g01206 . . . . . . . . . Bma07g01300 . . . Cmo09g00945 . . . . . . . . . . . . . Cla05g01493 Cam05g1609 . Cco05g1638 Clacu05g1589 Cmu05g1492 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010205 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01448 Blo_Chr03 FPKM 271.203705 292.752747 69.168289 68.850784 28.900492 27.302372 27.927563 42.389561 42.480347 42.214672