Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01452 ATGGTTGAACTAGAGGTTCAGATTCCAACTGCTTTCGATCCATTCGCTGAAGCCAAAGACACGGATGCTCCTGGAGCAAAAGAGTATGTTCATATCCGCGTTCAGCAAAGAAACGGTAAAAAGTGCCTGACCACAGTTCAGGGGCTGAAGAAAGAGTATAGCTACGAGAAGATTCTGAAAGATGTCAAGAAAGAGTTTTGCTGCAATGGAAATGTCGTGCAGGACAAAGAACTGGGGAAGATAATTCAGCTCCAAGGTGATCAGCGCAAGAACGTCTCGCAGTTTCTTGTACAGGCTGGGGGTTCTTTAGTGGGGACTATCTTTGGAGCCATTAATGGACAGAGTAGGGGATTGGGGTTCTTCAATGGTGCTGGAATAGGAGCCATTACAGGTGCATTTGTGGCCATCCAATTGCTTGAATCTGCTGTTGAAGGCCCTTCGTTGTCCAAAGTTCATCTTTTAAGCAGTTTGGTAAATGAAAACTCCTTCGTTGAATACTGGATGGTCGAATCCATGCAAAGAGAAATTTCAGACGCAGGCGAAGATTCTGGGTTTGACGGATTATCAAAAACTTGCCTTCAAATTCAAAAGCTTCCAGTGTTTGAGTTTCAGTCATGCAGACCAAACAAGGAATCAGAAAGCAATGTCATTTGCTGCTCCATTTGCTTAGAGGAATTGGAGGATGGACAGACAGCCAGAAGTCTACCGGAATGTGGCCATTTCTTCCACATGAACTGCATAGACAGATGGCTTCACTTGAGTGGCTCTTGCCCCACCTGTAGAAATATCATTCCCATTCACCTTTCAATAACTCCATCCACTTAA 825 44.48 MVELEVQIPTAFDPFAEAKDTDAPGAKEYVHIRVQQRNGKKCLTTVQGLKKEYSYEKILKDVKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGGSLVGTIFGAINGQSRGLGFFNGAGIGAITGAFVAIQLLESAVEGPSLSKVHLLSSLVNENSFVEYWMVESMQREISDAGEDSGFDGLSKTCLQIQKLPVFEFQSCRPNKESESNVICCSICLEELEDGQTARSLPECGHFFHMNCIDRWLHLSGSCPTCRNIIPIHLSITPST 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41149327 41153282 - BLOR12633 Blo03g01452 58916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01452 274 CDD eIF1_SUI1 28 101 IPR005874 GO:0003743
Blo03g01452 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 266 IPR013083 -
Blo03g01452 274 Pfam Translation initiation factor SUI1 27 99 IPR001950 GO:0003743|GO:0006413
Blo03g01452 274 Gene3D - 2 107 - -
Blo03g01452 274 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 100 - -
Blo03g01452 274 SMART ring_2 219 260 IPR001841 -
Blo03g01452 274 SUPERFAMILY eIF1-like 4 101 IPR036877 GO:0003743|GO:0006413
Blo03g01452 274 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 5 100 IPR005874 GO:0003743
Blo03g01452 274 CDD RING-H2_PA-TM-RING 218 261 - -
Blo03g01452 274 ProSiteProfiles Zinc finger RING-type profile. 219 261 IPR001841 -
Blo03g01452 274 SUPERFAMILY RING/U-box 194 270 - -
Blo03g01452 274 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 100 - -
Blo03g01452 274 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Blo03g01452 274 Pfam Ring finger domain 219 261 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01452 Blo-Chr3:41149327 Blo13g00396 Blo-Chr13:23314273 9.14E-46 dispersed
Blo04g00872 Blo-Chr4:9690159 Blo03g01452 Blo-Chr3:41149327 1.70E-22 transposed
Blo05g00700 Blo-Chr5:23832693 Blo03g01452 Blo-Chr3:41149327 3.29E-21 transposed
Blo13g00055 Blo-Chr13:822264 Blo03g01452 Blo-Chr3:41149327 1.76E-10 transposed
Blo13g00097 Blo-Chr13:1726852 Blo03g01452 Blo-Chr3:41149327 5.95E-08 transposed
Blo03g00556 Blo-Chr3:21901163 Blo03g01452 Blo-Chr3:41149327 2.12E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01452 K03113 - csv:101202908 193.741