Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01455 ATGGGAAGAAATCTGGATGTTGATTCTCCTCCCACCTTTAGTCATCACCATCTTCCCATTCTCAAGCTCCTAGACTTCTCATTTAGGATGTTTTCAATTCCTCTTAGCTTATCAACTATTTGGTTAACTCTTACTAACCGGCAACATAATAGCACTTATGGGACATTAGAGTTCCATAATCTCATTGGTCTTAAGGTCATTAAAGCTTGGGTTTTCTTTGTCTCTGATCAATCATATTGTCCTTCATGGTTCATCTGGCAGATTGTCGCCTACTCAATGATCACATCGGCGGCTGCAGTGGCAGAGATTCTGTACTTAGCTAACAATGGTGATGGGGAAGTGTCATGGAGTGAGGGTTATGCTGGTGGAGATGAAGCCAATATGCTTAGAAGGCATCTCGTTGGAAGATCTGTAAAAGTAGGCGTGGGTGCCAATCGAGCAGCGATTGCTGCTTGCTTCTTCGAGAGGTATGGTTACATCGATCCTCGCAGTAATATGCCTAGCAGTAACCATGGTCTTAAGAAATTGGAAAATGATCTTTGTTCAGTGAAAATTGGTGCTGTCATTCTGGATGATGGAATGCAGCACTGGAAATTACAGCGCGATGTAGAGATTGCAATGGTTAATGGATTAACACAATGGGGAAGCCGTAAACTTTTACCACTGGGTCCTTTAAGGGAACCATTGACAGAGCTGAAGCGAGCCGATGTGGCTGTTGTTCATCATGCTGATTTAGTTTCAGAACAAGATCTCCAGGATATGACGCTATTCATGAGAGGAATTAAGGAGACTATCGTTGTTGTCTTCACCAAAATGGCACCTTCATACTTGTTCAACGTAGGAAATGCCAACTCCATAATTGCTTTGGAAGCTTTGCATAATAAAGTTGTCTTATGCGTTTCTGCTATTGCTTCTGCAGAAGCTTTTGTACAGACCGTTCGAAAGCTTGGAGCATATAATGTGTCTCGAATAGACTACTCGGACCATCGCAAATTTATGGAGAAGGATATCGCAGAAATTAGAGTGAAACTTAAGGATTTAGAGAAAGAGTTTGGATCAAAACCCATTGTTGTGGTAACAGAAAAGGTATATCCAGAAGGGACTCACCTTATGATTCCATGGTTTGAGAGGCCAGTCATATATGATGTTCGTGCGAGACCTCATCTTGTGGAGAGTACTTCTGGGAGTCGTGACCTCCAGATGGTGAAAATTGGGCTTCGAGTTCTCACACGCCCGGAACCAGATCAGTTACCTACAATTTATCGAACTCTTGGTGAGAATTACAACGAGCGGGTCCTGCCTTCGATTATTCATGAAACTTTGAAAGCTGTGGTTGCACAGTATAATGCTAGCCAGCTGATTACTCAAAGAGAGGCTGTTAGTAGAGAAATACGAAAAATTTTGACGGAGAGGGCAGCTAACTTCAATATGGCTCTCGAAGACGTGTCTATAACAACCTTAACTTTCGGGAAGGAGTTCACAGCTGCAATTGAAGCTAAACAAGTGGCTGCACAAGAAGCCGAGAGAGCTAAATTTGTCGTTGAAAAAGCAGAACAGGACAAGAAAAGTGCTATTATCAGGGCACAGGGAGAGGCTCAAAGTGCCCAGCTAATTGGTCAAGCCATCGCCAACAATCCTGCCTTTATCACACTCCGGAAAATCGAAGCTGCGAGAGAAATAGCGCACACCATCTCAAACTCTGCCAACAAAGTTTTCCTGAATTCAAATGATTTATTGTTGAATCTTCAAGAGATGAATTTGGAGCTCAGTGGCAAGAAATAG 1782 42.76 MGRNLDVDSPPTFSHHHLPILKLLDFSFRMFSIPLSLSTIWLTLTNRQHNSTYGTLEFHNLIGLKVIKAWVFFVSDQSYCPSWFIWQIVAYSMITSAAAVAEILYLANNGDGEVSWSEGYAGGDEANMLRRHLVGRSVKVGVGANRAAIAACFFERYGYIDPRSNMPSSNHGLKKLENDLCSVKIGAVILDDGMQHWKLQRDVEIAMVNGLTQWGSRKLLPLGPLREPLTELKRADVAVVHHADLVSEQDLQDMTLFMRGIKETIVVVFTKMAPSYLFNVGNANSIIALEALHNKVVLCVSAIASAEAFVQTVRKLGAYNVSRIDYSDHRKFMEKDIAEIRVKLKDLEKEFGSKPIVVVTEKVYPEGTHLMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPEPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAANFNMALEDVSITTLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEAQSAQLIGQAIANNPAFITLRKIEAAREIAHTISNSANKVFLNSNDLLLNLQEMNLELSGKK 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41166973 41176660 + BLOR12636 Blo03g01455 58919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01455 593 Pfam SPFH domain / Band 7 family 361 518 IPR001107 -
Blo03g01455 593 Pfam Tetraacyldisaccharide-1-P 4'-kinase 122 362 IPR003758 GO:0005524|GO:0009029|GO:0009245
Blo03g01455 593 Coils Coil 500 520 - -
Blo03g01455 593 PRINTS Prohibitin signature 448 464 IPR000163 GO:0016020
Blo03g01455 593 PRINTS Prohibitin signature 425 443 IPR000163 GO:0016020
Blo03g01455 593 PRINTS Prohibitin signature 496 519 IPR000163 GO:0016020
Blo03g01455 593 PRINTS Prohibitin signature 519 535 IPR000163 GO:0016020
Blo03g01455 593 PRINTS Prohibitin signature 384 400 IPR000163 GO:0016020
Blo03g01455 593 PRINTS Prohibitin signature 402 421 IPR000163 GO:0016020
Blo03g01455 593 PRINTS Prohibitin signature 471 490 IPR000163 GO:0016020
Blo03g01455 593 PANTHER PROHIBITIN 356 592 IPR000163 GO:0016020
Blo03g01455 593 Gene3D Band 7 domain 369 503 IPR036013 -
Blo03g01455 593 CDD SPFH_prohibitin 358 535 IPR000163 GO:0016020
Blo03g01455 593 PANTHER PROHIBITIN-1, MITOCHONDRIAL-LIKE 356 592 - -
Blo03g01455 593 Coils Coil 330 350 - -
Blo03g01455 593 SMART PHB_4 354 501 IPR001107 -
Blo03g01455 593 SUPERFAMILY Band 7/SPFH domain 372 508 IPR036013 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01455 K17081 PHB2; prohibitin 2 - vvi:100267721 424.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01455 Blo-Chr3:41166973 Blo07g00891 Blo-Chr7:27674821 1.34E-147 dispersed
Blo03g01455 Blo-Chr3:41166973 Blo17g00321 Blo-Chr17:3365652 5.12E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g524 . Blo03g01455 Bda07g00368 . . . . . . Cmo04g01038 . . . . . . . . . . . . . . Cla10g00496 Cam10g0488 Cec10g0506 Cco10g0491 Clacu10g0508 Cmu10g1335 Cre10g0740 . . Cone14ag1150 Cone15ag1166 . Csa03g00502 . Cme06g02240 . . . . Bpe11g00553 . . . Sed04g0718 . . Cma04g00962 . Car04g00903 . . Cpe01g00875 Bhi11g00603 Tan01g1718 Cmetu06g2809 . . . . . . . . . . . Lsi05g00584 . Chy06g01824 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008700 0 1 1 2 1 0 1 0 0 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 6 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01455 Blo_Chr03 FPKM 2.986943 2.878878 1.176632 1.34555 1.674234 0.995158 1.253865 0.349478 0.390753 0.397454