Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01461 ATGTCAGACCTTGACAGGCAAATAGAGCAGCTGAAGAAGTGCGAGCCTCTCAAAGAGTCTGAAGTCAAAGCTCTTTGCCTCAAAGCTATGGAAATCCTCGTCGAAGAGAGCAACGTTCAAAGGGTCGACGCCCCTGTCACCATTTGTGGTGACATTCATGGGCAATTCTATGATTTGAAAGAGCTTTTCAAAGTAGGAGGTGATTGCCCAAAGACTAACTACTTGTTTCTCGGAGATTTTGTTGACAGAGGATTTTATTCAGTCGAGACATTTCTCCTCCTCCTTGCTCTGAAGGTGAGATATCCAGACCGGATAACACTCATTAGAGGGAATCACGAAAGCCGACAAATCACACAGGTTTATGGATTTTATGACGAGTGTCTTCGGAAATATGGTTCTGTGAATGTTTGGAGATACTGTACTGATATATTTGATTACTTAAGCCTCTCCGCTCTAATCGAAAACCGGATTTTTAGTGTCCATGGTGGTCTCTCTCCTGCCATATCAACCTTGGATCAGATTCGAACTATTGATCGAAAGCAAGAAGTACCTCATGATGGGGCCATGTGTGACTTACTATGGTCAGATCCCGAAGATATTGTCGACGGTTGGGGTTTGAGTCCTCGTGGGGCCGGTTTCCTATTTGGTGGCAGTGTTGTTACTACTTTTAATCACTCAAACAATATCGATTATATTTGTCGTGCTCATCAGTTGGTAATGGAAGGCTATAAATGGATGTTCAATAATCAGATAGTCACAGTTTGGTCCGCTCCAAATTACTGCTACAGATGCGGGAATGTAGCGGCAATACTGGAATTGGATGAGAATCTTAATAAGCAGTTCCGGGTTTTTGATGCTGCCCCACAGATCAGAACCTTCATTTTTATTGCCACTGTTCTGACTTTTTCATTCATCTCTGCAACTTCCCATCTTCAATCCAGTGAAGAAGGGTTCATCTCCGTAGTCATATCTGATAAGGGTCTCGATTACGCTAAGGAATTATTGATAAGAAAAGCAGTTTCCGCCTTTGTTCCACTTCAACTATCTGATATTGAGAAGTCTGTAGAAATTCCCCTTGTAGGGAAAGTTCATATCGTTCTTTCTAACATTTTAATCGACAGTATCGACGTCACTTCCTCGAATGTCGAGACCAGCGAGGCAGGCGTCGATTTAGTTGTTTCTGGTGCCACTGCAAATATGAGCATGGAGTGGGAGTATTCTTACAGTTCTTGGTTCATTGAAATTTCTGATAATGGAGATGCCATTGTTCAGGTCGAAGGCCTGGAAATCGCCCTTATTGTTGCATTGAAGGAGAAAGATGGAATTCTGAAGCTGTCACTGTTAGAATGCAGATGCAATGTGGAAGATATCTTAGTAGATTTGGAAGGAGGAGCTTCTTGGCTTTACCAAGGAGTAGTGGGTGCTTTTCAATGGAAAATAGGATCAGCAGTTGAAGATGCCATTTCCAAGAAAATCGGAGACGGGATTAAAAAGCTCAACTCTTTACTACAATCGCTCCCAAAAGTAGTCCCGATTGACAATGCTGCTGCTTTAAATGTTACTTTCGTGGCGAGTCCGGTATTAGATAATTCTTATGTTGAATTTTATATTAACGGGTTATTCACAAGAACTCGAGGGGAGTTATTTTCTAGCCGTTACCATGAAGAACTACAACATTCTGTTTCCTGCAACGATCTCGCAAACATGATCGAGATTTCAGTCGACGAAAAAGTTTTCAACTCAGCTTCACAAGTTTTCATCAGTTCAGATCATATGCACTGGATTGTCGACAAAATTCCGGACCAGTCTCTTTTGAATACCTCGGGATGGAGGGAAATATTTCCTCAAATATACGATGACTACCCCGACAATGGAATCAATCTTAACGTTTCGGTTTCTTCTCCGCCATTCATAAGAGTGATGAATCATGAGATTAATGCTACCATTTCTATGGAGGTGATAATTAACGTGCTCGATGTTGTCGAAGTTATACCAGTTGCGTGCATCTCATTGGAGATTATGGTTTCGGTTGCTCCAGAAATCTTGGGTAATAATTTGGCTGCACAAGTAGACTTGCAAAGCTTTATGATGTTTTTGAGGTGGAGCAAAATAGGTGATCTTCGGTTGAATCTAATTCAGCCAGTGGTGTCAAAACTCATTGAAAACACTTTCTTGCCTGACATCAACTTACGCCTCGGAAAAGGGTTTCCTCTGCCGCTTCTCCGTGGATTCGCTCTCGAGAATGCTACGTTGGTTTGTGCTGATGCCCATGTTGTTATATGCAGCGATGTTTGTTTCCGAGATCAAGGTCTAGAACTCTTTGGTAGATTTTATGTTGCTTGA 2343 41.95 MSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDLKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENRIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTTFNHSNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDENLNKQFRVFDAAPQIRTFIFIATVLTFSFISATSHLQSSEEGFISVVISDKGLDYAKELLIRKAVSAFVPLQLSDIEKSVEIPLVGKVHIVLSNILIDSIDVTSSNVETSEAGVDLVVSGATANMSMEWEYSYSSWFIEISDNGDAIVQVEGLEIALIVALKEKDGILKLSLLECRCNVEDILVDLEGGASWLYQGVVGAFQWKIGSAVEDAISKKIGDGIKKLNSLLQSLPKVVPIDNAAALNVTFVASPVLDNSYVEFYINGLFTRTRGELFSSRYHEELQHSVSCNDLANMIEISVDEKVFNSASQVFISSDHMHWIVDKIPDQSLLNTSGWREIFPQIYDDYPDNGINLNVSVSSPPFIRVMNHEINATISMEVIINVLDVVEVIPVACISLEIMVSVAPEILGNNLAAQVDLQSFMMFLRWSKIGDLRLNLIQPVVSKLIENTFLPDINLRLGKGFPLPLLRGFALENATLVCADAHVVICSDVCFRDQGLELFGRFYVA 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41218943 41228358 - BLOR12642 Blo03g01461 58925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01461 780 Pfam LBP / BPI / CETP family, C-terminal domain 543 763 IPR001124 GO:0008289
Blo03g01461 780 Gene3D - 320 753 - -
Blo03g01461 780 SMART bpi1_3 323 546 IPR017942 GO:0008289
Blo03g01461 780 ProSitePatterns Serine/threonine specific protein phosphatases signature. 108 113 IPR006186 GO:0016787
Blo03g01461 780 CDD BPI1 318 542 - -
Blo03g01461 780 SMART pp2a_7 17 288 IPR006186 GO:0016787
Blo03g01461 780 Pfam Calcineurin-like phosphoesterase 45 237 IPR004843 GO:0016787
Blo03g01461 780 Pfam LBP / BPI / CETP family, N-terminal domain 327 504 IPR017942 GO:0008289
Blo03g01461 780 PRINTS Serine/threonine phosphatase family signature 45 72 IPR006186 GO:0016787
Blo03g01461 780 PRINTS Serine/threonine phosphatase family signature 142 168 IPR006186 GO:0016787
Blo03g01461 780 PRINTS Serine/threonine phosphatase family signature 107 131 IPR006186 GO:0016787
Blo03g01461 780 PRINTS Serine/threonine phosphatase family signature 250 266 IPR006186 GO:0016787
Blo03g01461 780 PRINTS Serine/threonine phosphatase family signature 74 101 IPR006186 GO:0016787
Blo03g01461 780 PRINTS Serine/threonine phosphatase family signature 171 198 IPR006186 GO:0016787
Blo03g01461 780 PRINTS Serine/threonine phosphatase family signature 228 248 IPR006186 GO:0016787
Blo03g01461 780 Gene3D - 326 504 - -
Blo03g01461 780 PANTHER OS06G0309200 PROTEIN 296 769 IPR045897 -
Blo03g01461 780 SMART bpi2_2 564 762 IPR001124 GO:0008289
Blo03g01461 780 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 531 766 IPR017943 GO:0008289
Blo03g01461 780 Gene3D - 1 294 IPR029052 -
Blo03g01461 780 CDD MPP_PP2A_PP4_PP6 3 288 - -
Blo03g01461 780 SUPERFAMILY Metallo-dependent phosphatases 2 306 IPR029052 -
Blo03g01461 780 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 321 530 IPR017943 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01461 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16] - zju:107434327 599.356
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g01013 Blo03g01461 BCT
Blo03g00539 Blo03g01461 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01461 Blo-Chr3:41218943 Blo16g01139 Blo-Chr16:39895750 5.73E-139 dispersed
Blo15g00461 Blo-Chr15:6981508 Blo03g01461 Blo-Chr3:41218943 1.31E-145 wgd
Blo03g00539 Blo-Chr3:20873567 Blo03g01461 Blo-Chr3:41218943 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g81 Blo03g01013 Blo03g01461 . . . . Bma14g00720 . . . . . . . . Cpe05g00531 . . . . . . . . Cla02g02319 Cam02g2463 Cec02g2516 Cco02g2545 Clacu02g2441 Cmu02g2374 Cre02g2691 Cone1ag0402 Cone5ag1296 . . . . Chy05g00058 Cme05g00072 . . Bda07g00714 . Bpe08g00238 Bpe11g00891 Bma07g00226 . Sed01g3371 Cmo02g01238 Cmo20g00035 Cma02g01203 Cma20g00033 Car02g00996 Car20g00025 Cpe16g00921 . Bhi10g00409 Tan07g0650 Cmetu05g1620 . Hepe08g0054 . . . . . . . . . . . . .
Vvi19g582 Blo03g00539 Blo03g01461 Bda07g00380 Bda09g00410 . Bpe08g01110 . . . . . Cma09g00974 Car01g00981 Car09g00888 Sed07g2701 . Cpe02g00791 Bhi09g01699 Tan01g3130 Cmetu10g1344 . Hepe01g1246 Mch11g1219 . . . . . . . . Cone6ag0042 Cone9ag0048 . . Lsi02g01878 Csa07g01012 . . . . . . . . Bma07g01282 Bma14g00321 . Cmo01g01157 Cmo09g00973 . . . . . . . . . . . . . Cla09g01035 Cam09g1091 Cec09g1090 Cco09g1111 . . Cre09g1056 . . Chy01g01058 Cme01g00995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007409 2 1 2 3 1 1 1 1 1 1 0 1 2 1 1 2 1 2 0 1 1 1 1 0 1 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01461 Blo_Chr03 FPKM 49.411015 57.150608 76.69368 71.984512 56.738476 62.334152 55.700596 88.628502 83.95636 83.283775