Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01462 ATGGTTACAGACCAAGAGATATCTCAAGCCATACAAACCCTCTTCCACGACTCTTCTTCTGCATCTGCTTCAAACTCGAACACTTTCTCTAGCCTAAAAGGAGTCGTTCAGGAGCTGGAATCGAAGCTTGGCGTCGATCTCTCTCACAAGGTCGACTTCATTCGGGCTCAGATCCAGTCCTTCTTTCGCGCTCACCCTCAACAACCGTCTCCTCAACCTCCTCAGAAGGAGCATTTTCCTTTTCAACAAAACCCTAATTTTCAATCTAGTCCTTTCCCTGTATCTTCTGCTTTTCAGAGTTTCTCCTCTCAACCGCCTACTGGTAAGGCAGAAGCTCCCGTCTCTGTGACGGTCGCAGAGACGCCCAAGGAAAGGTTGGAGCAAGTTGCTACAGAGTTGGGAAGGTTTATACTTTATCTTGGAATGATGCTGCTGTTGTCTCTGAATTGCTGTTCTCAACCCAAAACTAAGAGAAGAGGTGGACCAGGGGGTCTAAATAAGCTTTGTGGTGTTTCACCTGAACTTCAAGCAATTGTTGGCCATCCTGAACTGCCAAGGACAGAGATTGTGAAACAGCTGTGGGCATACATAAGGAAAAACAATCTTCAAGATCCGAATAACAAAAGGAAAATAATTTGCAATGACGAACTCCGTTTGGTATTTGAAACTGACTGCACTGACATGTTCAAAATGAACAAATTGCTTGCAAAACATATTATTACTCTTGAACCTACAAAACCTTCAAGCTCTAAGAAGCCGAAAGTAGAAGTACAATCTGGCATTAAAATCTCTGAATCAGGTCCTTCTGTGATTATATCTGAAGCACTTGCAAACTTTTTTGGTGTTGATGGAAGGGAAATGCTCCAAGCAGAGGTTCTGAGACGCATTTGGGAATATATCAGGGTTAATCATCTTGAGCATCTCTGCTCTGGGTATTCCAGAGGTTTTAGGGCGGCACCATATATTCAGAAGATCATGATATCTCGTCTTATTGGTGGGTCTCGACCTGGCCTTGGACTAGACATGCGCGCATTATTTGATCCAAGGCCATTCCAAAAGTTGGCTCCTAGGCCAGCGTTCAGGTCAAACCCAGTTTTGAGTTTCGCCCACCAGCCTGCCTGGTTGGCCGGCTGGTCCACTGCAGGCCAACTGAAGAAATTCGCGGAAAAAATGGCTGGAAAAGGAGCTTTCGCCAACTGGGTTTTGCTGATTTTGCTGTTTGCCATCGCAGGAGCCGCCGTGGCTGCGCCTATCTGCAACGTCGAGCAGTCTGATCTAGCAAAATGCCTCCCTGCTGTCAGCGGCAAATCGCCTTCGCCGCCGACACCGGCGTGCTGCAGTGTTGTGGGTAGAGTGAACATCCCGTGTCTTTGCGGCTACAGGAGTTATCTTCCGAAGCTCGGAATTAATCCCTCTTTGGTCTTTGCTCTGCCGGGAAAATGCGGCATGAAAACTAAACCTTCATGCTCGGCTTAG 1476 47.02 MVTDQEISQAIQTLFHDSSSASASNSNTFSSLKGVVQELESKLGVDLSHKVDFIRAQIQSFFRAHPQQPSPQPPQKEHFPFQQNPNFQSSPFPVSSAFQSFSSQPPTGKAEAPVSVTVAETPKERLEQVATELGRFILYLGMMLLLSLNCCSQPKTKRRGGPGGLNKLCGVSPELQAIVGHPELPRTEIVKQLWAYIRKNNLQDPNNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIITLEPTKPSSSKKPKVEVQSGIKISESGPSVIISEALANFFGVDGREMLQAEVLRRIWEYIRVNHLEHLCSGYSRGFRAAPYIQKIMISRLIGGSRPGLGLDMRALFDPRPFQKLAPRPAFRSNPVLSFAHQPAWLAGWSTAGQLKKFAEKMAGKGAFANWVLLILLFAIAGAAVAAPICNVEQSDLAKCLPAVSGKSPSPPTPACCSVVGRVNIPCLCGYRSYLPKLGINPSLVFALPGKCGMKTKPSCSA 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41240347 41245143 + BLOR12643 Blo03g01462 58926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01462 491 Pfam DEK C terminal domain 30 62 IPR014876 -
Blo03g01462 491 Gene3D - 416 489 IPR036312 -
Blo03g01462 491 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 307 - -
Blo03g01462 491 ProSiteProfiles SWIB/MDM2 domain profile. 164 241 IPR003121 -
Blo03g01462 491 CDD SWIB-MDM2_like 169 239 - -
Blo03g01462 491 SMART swib_2 165 244 IPR019835 -
Blo03g01462 491 SMART aai_6 419 489 IPR016140 -
Blo03g01462 491 PANTHER - 1 307 - -
Blo03g01462 491 MobiDBLite consensus disorder prediction 79 110 - -
Blo03g01462 491 MobiDBLite consensus disorder prediction 64 115 - -
Blo03g01462 491 Pfam SWIB/MDM2 domain 169 239 IPR003121 -
Blo03g01462 491 Pfam Probable lipid transfer 412 489 IPR016140 -
Blo03g01462 491 Gene3D SWIB/MDM2 domain 160 250 IPR036885 -
Blo03g01462 491 Gene3D SWIB/MDM2 domain 262 311 IPR036885 -
Blo03g01462 491 CDD nsLTP_like 419 488 IPR044741 -
Blo03g01462 491 SUPERFAMILY SWIB/MDM2 domain 158 244 IPR036885 -
Blo03g01462 491 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 419 490 IPR036312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01462 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - csv:101217066 338.961
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo03g00535 Blo03g01462 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01462 Blo-Chr3:41240347 Blo16g00414 Blo-Chr16:16089647 1.67E-13 dispersed
Blo03g00535 Blo-Chr3:20627580 Blo03g01462 Blo-Chr3:41240347 1.02E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12188 PF14368 LTP_2 1.20E-09 CL0482 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01462 Blo_Chr03 FPKM 23.997375 23.153933 30.381157 28.056782 30.252413 30.882074 30.948301 44.168297 46.338211 51.980824