Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01482 ATGGATGAAAGTGAGAGAGGGTTTGACGAGGGTGGGGATCAGGATCAGGGGGATCAGTTTCATCGAAACGAAGCGATATCCGCTGTTGCTGATGAGGGTTTTTTGGGGGAGGAGGATGATGACTACGAAGACCTTTATAACGACGTCAATATTGGCGACGGGTTTCTTCAGTCTTTGAGAAAGAACGAGGATTCTGGTGTTTCTATACCAGGTGTTGGCGGTGGTAGTGGGGAAGGTACTGATGGCGCTGTAGGGGATGGAGGGCCCAGGGTTGCAAGATTAGCAGAGGGCTACAATCAGAGTCAAGGGTTTAGAGGCAACGATATGGGTATGGGAGGAGCAGTCGGATCAAAGCCATTGATCGGTGGTGGAGGTGGGATTAGAGTTGAATTAGGGCAAGGAAGTAAAATGAATGAGAATGAGGAACAAAGTAGTAATACTAATATTGGTGTTCAAGGGATTGGTCAGCATCATCCACCACAGCAAATACAACAACAGCAGCAACAACAAACACCACTACCGTCTCATGGAGTCGTAGGAAATGTTGGGATTATGGATAATGAGAATTTTGTAAGGCAAGGTGGAGGAGGAAATGTGAATGGGGTTGGTGGCAACGGCCTAGGAAATACAGCTGGTGGCGGCGGCAGTGGAGGTGGCGCAGGGACTATATTATTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAGGCCGAGCTTTGTAAGTACGGCCCTGTGAAGGAGGTGAAGTTTTTTGACGAGAAGGCTAGTGGGAAGTCAAAAGGGTACTGCCAGGTTGAATTTTATGATTCTAGTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGTCATTGTTTTAATGGACGTCCGTGTGTTGTTGCATATGCGTCACCCTACAGTGTTAAGAGAATGGGTGAGGCTCAAGTAAATAGGAGTCAACAGATGGCTCAATCTACTGTATCTCAAACGAGGAGAGGTCCCAATGATGTTCAAGGTAAGCCTGGTGGGAATACCATCACCACAGGTGGAAACTATCAAGGTGGTGATAATACTAATACTAATAATAGTAATAATAATAATAATAATAATAATAATAGAGGTTTTGGAAGAGGTAATTGGGGCAGGGGTAATGCTCTGGGAATGGGGAATAGAGGTCAAGTTGGTCCGATGAGGAATAGGGGTGGTGCAATGGGTGGGAGAGGTATAATGGGTAATGGTGGAAATGGGTTTGGTCAAGGTATTGGTGCAGCTCCTCATTTGTTGCATCCGCAGTCAATGATGGCTCAAGGTTTTGATCCAGCTTTTGGTGCGCCAATGGGAAGAATGGGAGCTTATGGTGGCTTCCCTGGGGCCCCTGCACCACCTTTCTCTGGGATTTTATCGGCATTCCCACCTGTGGGAAGTGTTGGTCTTCCTGGAGTTGCCCCACATGTGAATCCTGCTTTTTTTGGAAGAGGGATGCCCATGAATGGATTGGGGATGATGCCTACACCAGGTGTTGATGGACCTAATATGGGTATGTGGTCAGATCCTAGTATGGGCGGCTGGATTGGTGAGGAACATGGCGGTGGAAGAGCTGGGGAGTCCAGTTATGGGGAAGAGGCCGCATCTGAGCATCAGTACGGCGAAGACAGAGGAGGGTGGCAAAATACTAATAAAGAGAAAGATAGAGGTTCAGAAAGAGATTGGTCCGGGTCTTCTGACCGAAAGTATCGTGATGATAGAGAGCCAGGAGCTGATAAAGACATGCCTAGGGAAAAAGATGTTGGCCCTGACCATGATTGGATAGAGAGAAGACATCGCGATGAGAGAGAAACAGGCCGAGATAGGGATAAAGAGCGTGAGAGGGATCGGGAACGGTCTCGATCAGAACGCGAGAGAGATCGGGATCGAGATCGTGATAGGCATAAGGAAGATAGAGACAGATATGCAGACCATCATAGGCATCGGGACCGTGAAGCTGATCATGAAGATGAATGGGAAAGAGGACGATCGTCTAGAACTCATGGCAAGTCACGATTGCCTCAGGAGGAAGACCATCGGTCGAGATCAAGGGATGCTGATTATGGGAAGAGGCGAAGGCTTACTTCTGAGTAA 2103 48.03 MDESERGFDEGGDQDQGDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNIGDGFLQSLRKNEDSGVSIPGVGGGSGEGTDGAVGDGGPRVARLAEGYNQSQGFRGNDMGMGGAVGSKPLIGGGGGIRVELGQGSKMNENEEQSSNTNIGVQGIGQHHPPQQIQQQQQQQTPLPSHGVVGNVGIMDNENFVRQGGGGNVNGVGGNGLGNTAGGGGSGGGAGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDSSAATACKEGMNGHCFNGRPCVVAYASPYSVKRMGEAQVNRSQQMAQSTVSQTRRGPNDVQGKPGGNTITTGGNYQGGDNTNTNNSNNNNNNNNNRGFGRGNWGRGNALGMGNRGQVGPMRNRGGAMGGRGIMGNGGNGFGQGIGAAPHLLHPQSMMAQGFDPAFGAPMGRMGAYGGFPGAPAPPFSGILSAFPPVGSVGLPGVAPHVNPAFFGRGMPMNGLGMMPTPGVDGPNMGMWSDPSMGGWIGEEHGGGRAGESSYGEEAASEHQYGEDRGGWQNTNKEKDRGSERDWSGSSDRKYRDDREPGADKDMPREKDVGPDHDWIERRHRDERETGRDRDKERERDRERSRSERERDRDRDRDRHKEDRDRYADHHRHRDREADHEDEWERGRSSRTHGKSRLPQEEDHRSRSRDADYGKRRRLTSE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41599859 41601961 - BLOR12663 Blo03g01482 58946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01482 700 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 293 IPR000504 GO:0003723
Blo03g01482 700 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 300 IPR000504 GO:0003723
Blo03g01482 700 MobiDBLite consensus disorder prediction 508 700 - -
Blo03g01482 700 MobiDBLite consensus disorder prediction 137 176 - -
Blo03g01482 700 MobiDBLite consensus disorder prediction 310 402 - -
Blo03g01482 700 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 699 IPR034772 -
Blo03g01482 700 MobiDBLite consensus disorder prediction 1 23 - -
Blo03g01482 700 MobiDBLite consensus disorder prediction 550 700 - -
Blo03g01482 700 MobiDBLite consensus disorder prediction 310 372 - -
Blo03g01482 700 CDD RRM_CFIm68_CFIm59 224 297 - -
Blo03g01482 700 Gene3D - 151 317 IPR012677 -
Blo03g01482 700 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 699 - -
Blo03g01482 700 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Blo03g01482 700 SMART rrm1_1 223 296 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01482 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 - zju:107433910 765.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00463 Blo-Chr3:15506609 Blo03g01482 Blo-Chr3:41599859 0 dispersed
Blo03g01482 Blo-Chr3:41599859 Blo09g00485 Blo-Chr9:16064260 2.36E-09 dispersed
Blo03g01482 Blo-Chr3:41599859 Blo13g00553 Blo-Chr13:27487818 2.87E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g660 . Blo03g01482 Bda07g00411 Bda09g00437 . Bpe08g01092 . . . . Cma01g01076 Cma09g01007 Car01g00952 Car09g00919 . Cpe06g00817 Cpe02g00822 Bhi09g01762 . . . . Mch11g1266 . . . . . . . . . . . . Lsi02g01829 Csa07g00874 . . . . . . Bpe11g00588 . Bma07g01247 Bma14g00681 . Cmo01g01121 Cmo09g01010 . . . . . . . . . . . . . Cla09g02076 Cam09g2161 Cec09g2227 . . . . . . Chy01g01147 Cme01g00911
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002318 2 3 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 2 3 2 3 1 1 2 2 2 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01482 Blo_Chr03 FPKM 0.315018 0.824568 1.182016 1.655402 0.36523 0.520389 0.668984 0.123181 0.148211 0.116775