Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo03g01484 ATGCAGCGCCACGCAGCCATTGCAGCTTGGTCTCTAGCGCTCCCGTTAATCCTCGTGATTTCCGTCGCTCAAGCACATAACATCACGAAGCTGCTGGCCAAGCACCCCGAGTTTTCTACCTTCAACCACTACTTGACGGCGACGAACCTCGCGCCGGAGATCAACCAGCGTACCACCATTACAGTCTGCGTCGTAAACAATGCCGCATTGTCGCACCTCTTATCCAAACACCCATCCATCTACTCCATTAAAAACATTTTCTCCTTCCACGTCCTGCTCGACTATTTTGACGCTAGAAAACTCCACCAGATCGCCCATGGCACTGCCCTCGCCGCCACCCTGTTCCAAGCCTCTGGAACGGCCACCGGAACCTCCGGATTCGTCAACATTACCGATCTCCGAGGAGGAAAAGTCGGTTTAACTCCTGAAGAAAATGAGGGAAAAATCGATACCTATTTTGTCAAATCGGTCGAGGAAATTCCTTACTATATCTCTGTGATTCAGATCAGTAAGACATTGCCGTGGGAAATTGCGGAGCCGCCGACGTCTGGACCGAGTGAGCTTAATTTGACGGCGATTATGTCTGCGCATGGCTGTAAAGTGTTCGCCGATACTCTTTTGGCTTCTGGAGCTTTAAACGCGTTTGCAGACAACGCTATTGGTGGATTGACGGTGTTTTGCCCCGTCGATGATGTTTTCAAGGCGTTTTTGCCGACGTACAAGAACTTAACAGCTGCCGGAAAGAATTCCTTGCTGGAGTTTCACGGCATCCCTATTTACATGTCGATATCGATGTTGAAGTCCAACAATGGCGCAATGAACACGTTGGCTACCGACGGAGACAACAAATTCGACTTCACTGTGCAAAATGAAGGAGATGATGTGACGTTGAAGACGAAGCTTGTGACGGTGGAGATCACCGGCACGCTCCTTGATGAGCAACCCGTGGCGATCTTCACCATTGACAAGGTTTTGAAGCCGACCGAGCTGTTTAGATGGGAGGCACCGGCTCCTGCTCCAGAGCCGAAGAAGAAAGTTAAACATCAACAGGCTGTAAAGGGTCATAAAGAAGTTTCATCGCCGGATTCAGACTCTCAAGCTGATTCACCAGACGACGACCCAGCGGATCTAACGACGGATGATCACAAAAATGGTTCCAGTTCCATTACTAAACTTAGAGTCGGGATGGCGACCGGCGAAGAAGAGGGTCTCATTCGCAACAGACCTGACTTCATCACGCCTGATTTCCAGGCCATGCAGTGA 1263 50.2 MQRHAAIAAWSLALPLILVISVAQAHNITKLLAKHPEFSTFNHYLTATNLAPEINQRTTITVCVVNNAALSHLLSKHPSIYSIKNIFSFHVLLDYFDARKLHQIAHGTALAATLFQASGTATGTSGFVNITDLRGGKVGLTPEENEGKIDTYFVKSVEEIPYYISVIQISKTLPWEIAEPPTSGPSELNLTAIMSAHGCKVFADTLLASGALNAFADNAIGGLTVFCPVDDVFKAFLPTYKNLTAAGKNSLLEFHGIPIYMSISMLKSNNGAMNTLATDGDNKFDFTVQNEGDDVTLKTKLVTVEITGTLLDEQPVAIFTIDKVLKPTELFRWEAPAPAPEPKKKVKHQQAVKGHKEVSSPDSDSQADSPDDDPADLTTDDHKNGSSSITKLRVGMATGEEEGLIRNRPDFITPDFQAMQ 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41609459 41611653 + BLOR12665 Blo03g01484 58948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo03g01484 420 SUPERFAMILY FAS1 domain 32 140 IPR036378 -
Blo03g01484 420 Pfam Fasciclin domain 199 327 IPR000782 -
Blo03g01484 420 Pfam Fasciclin domain 36 104 IPR000782 -
Blo03g01484 420 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 3 391 - -
Blo03g01484 420 MobiDBLite consensus disorder prediction 335 420 - -
Blo03g01484 420 MobiDBLite consensus disorder prediction 338 362 - -
Blo03g01484 420 ProSiteProfiles FAS1/BIgH3 domain profile. 25 173 IPR000782 -
Blo03g01484 420 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 391 IPR033254 -
Blo03g01484 420 ProSiteProfiles FAS1/BIgH3 domain profile. 186 325 IPR000782 -
Blo03g01484 420 SUPERFAMILY FAS1 domain 184 328 IPR036378 -
Blo03g01484 420 Gene3D FAS1 domain 23 160 IPR036378 -
Blo03g01484 420 Gene3D FAS1 domain 190 328 IPR036378 -
Blo03g01484 420 SMART fasc_3 224 328 IPR000782 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo03g01484 - - - csv:101212499 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01484 Blo-Chr3:41609459 Blo04g00648 Blo-Chr4:5679959 1.67E-12 dispersed
Blo01g00134 Blo-Chr1:1834249 Blo03g01484 Blo-Chr3:41609459 2.18E-84 transposed
Blo01g01347 Blo-Chr1:51159178 Blo03g01484 Blo-Chr3:41609459 8.27E-32 transposed
Blo03g01128 Blo-Chr3:37749882 Blo03g01484 Blo-Chr3:41609459 1.89E-34 transposed
Blo13g00439 Blo-Chr13:24639403 Blo03g01484 Blo-Chr3:41609459 2.00E-146 transposed
Blo13g01075 Blo-Chr13:32916963 Blo03g01484 Blo-Chr3:41609459 1.71E-36 transposed
Blo15g00458 Blo-Chr15:6959474 Blo03g01484 Blo-Chr3:41609459 2.81E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g668 . Blo03g01484 Bda07g00412 Bda09g00439 Bpe09g00126 Bpe08g01090 . Bma13g01116 . Cmo06g00685 Cma01g01075 Cma09g01013 Car01g00951 . Sed07g2749 Cpe06g00821 Cpe02g00823 Bhi09g01777 Tan01g3193 Cmetu01g1443 . . Mch11g1277 . Cla10g00408 Cam10g0405 Cec10g0427 Cco10g0417 Clacu10g0412 Cmu10g1244 Cre10g0661 Cone6ag0009 . Cone14ag1220 Cone15ag1241 Lsi02g01825 . . Cme06g02759 . . . Bda12g00965 Bpe11g00589 . Bma07g01245 Bma14g00680 . Cmo01g01120 Cmo09g01015 . . . . . . . . . . . . . Cla09g02079 Cam09g2166 Cec09g2231 . . . . Lsi05g00498 . Chy01g01144 Cme01g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004217 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo03g01484 Blo_Chr03 FPKM 18.085602 20.333952 7.433334 8.747341 5.93815 5.136949 6.413721 11.749417 10.882404 12.692245